G1888945 (LOC106569852)


Basic Information

Item Value
gene id G1888945
gene name LOC106569852
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62481725 ~ 62484288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2161032
GTAAAAGTctacaagtatttggttttaaatatactgaagtatcaaaaaagtataaataatttcaaattacttatttaaagcaaaccagacggcaccattttttatgttatttatttttatttacagatagccagggtcacactccaacactcagacatcatttacaaatgaagcatttgtgtttattgagtccgccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtccgccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtccgccagatcagaggcagtagggaagaccagggatgttctctgtttattgagtccaccagatcagaggcagtaggggtgaccagggatgttctctgtttagtgagtccgccagatcagaggcagtagggaagaccagggatgttctctgtttattgagtccaccagatcagaggcagtagggatgaccagggatgttctctTGATAAGGGCGTGAATTGGATAATGTTccggtcctgctaagcattctaaAACTAGTAATTTTGGGTGTCAGTGGAGTAAACAGTACGTTAACTTAtctaggaatgtagtgaagtaaaagtaaaagttgaactgtgacacacaacaaacacacacactctctcctggCACATAGTTTATCTACAAGATGAGGATAGTATTATCACTCCTTAATTAAACTATAAACATTTACCCATGGGGCCATGCCACATTTTTGTCTTGCGACAATGAACACATATATTCTTGAAAGAGTATTTTTGATAATACTTCCCGTGATATTGTGCGACAGATGCTGCTGCTTGGGTGCTTGGCTCTGCTGACTGCAGTATGTGGACAGCTTTCACTGCTGCTGATATCTCCACTACTCCCTCCTTACAGCAGAGCATCAGCTTTTCctggaggtcagaggtcatcacCGTCTTAAAATCACGACTTTGGTTAAGGATGACGGCAGGCATCTCTTCAGAAACAGGGGGGGCACTGTGGTCTTTAAACCTCTGGAGGAAGTGGATGTTGTCCTCTGTGTGAGAGAACTTCTCCAGCTCAGAATCTCTcctcctcagctcagccacctCCTGCTCCAGTCGCTCCAGGAGGCCTTCAGCCTGACTCACTTCAGCCTTCTCCTGGTCTCtgatcagctccttcacctcAGAGCACCTTGTCTCCATGGTGCGGATAAGCTCAGCAAAGATCCTCTCGCTGTCGTCCACGGCTGCCTGTGCAGAGAGCTTCAGAGAGTCCACAGCCTGTCTCAGCTCctgcatctccttctctctctcctggattcTCTgctgggatttctgttgtttctCCCCCACCTGCTTCTGTTTCTcagtcctctctgctgcagctgaGACTGTATCATGGCCTTTATGTTCATCCATGGTACATAGATAACAGATACACTGCTGATCGGTACGACAGtaaacctccagcagtttgtCATGTTGAGAACAGATCTTCTCCTGTAGTTGTGTGGAGGCTTTGACCAGCATGTGCTTCTTTAAGGCAGGGAAATTATAGTGAGGCTGgaggtgagtctcacagtaagagACCAGACACGCCAGACAGGACATGAGGGCTTTGTGTTTTCTCCCAGTGCAGAAATCACACTccacatctccaggtccagcaTAACAGTGAGCAGGAGGAGCAGCATGAGGAGCAGCATGAGGAGCAGCATGAGGAGCAGCatgaggagcagcaggaggagcagcaTGAAGAGCAGTATGTTTCAGTTTCTCCACCACTTTAGCCAGCAACGTGTTTCTGTTCAGAACAGGCCTTTGGACGAAGGTCTGTCGGCACTCTGGGCAGCTGTAAACACCTTTCAGTTCGTCCTGATCCCAGCAGTCCTCAATACAACCCATACAGTAGTTGTGTCCACAGGAAGTAGTCACCGGATCCTTCAGTATATCCAAGCAGATCGAACAGCTAAATGAATCCCGATCTTCAAAAAATGCCTCTGCCATTTTGACACTCACTAACAAACGGCG
>TU2161033
GTAAAAGTctacaagtatttggttttaaatatactgaagtatcaaaaaagtataaataatttcaaattacttatttaaagcaaaccagacggcaccattttttatgttatttatttttatttacagatagccagggtcacactccaacactcagacatcatttacaaatgaagcatttgtgtttattgagtccgccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtccgccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtccgccagatcagaggcagtagggaagaccagggatgttctctgtttattgagtccaccagatcagaggcagtagggatgaccagggatgttctctTGATAAGGGCGTGAATTGGATAATGTTccggtcctgctaagcattctaaAACTAGTAATTTTGGGTGTCAGTGGAGTAAACAGTACGTTAACTTAtctaggaatgtagtgaagtaaaagtaaaagttgaactgtgacacacaacaaacacacacactctctcctggCACATAGTTTATCTACAAGATGAGGATAGTATTATCACTCCTTAATTAAACTATAAACATTTACCCATGGGGCCATGCCACATTTTTGTCTTGCGACAATGAACACATATATTCTTGAAAGAGTATTTTTGATAATACTTCCCGTGATATTGTGCGACAGATGCTGCTGCTTGGGTGCTTGGCTCTGCTGACTGCAGTATGTGGACAGCTTTCACTGCTGCTGATATCTCCACTACTCCCTCCTTACAGCAGAGCATCAGCTTTTCctggaggtcagaggtcatcacCGTCTTAAAATCACGACTTTGGTTAAGGATGACGGCAGGCATCTCTTCAGAAACAGGGGGGGCACTGTGGTCTTTAAACCTCTGGAGGAAGTGGATGTTGTCCTCTGTGTGAGAGAACTTCTCCAGCTCAGAATCTCTcctcctcagctcagccacctCCTGCTCCAGTCGCTCCAGGAGGCCTTCAGCCTGACTCACTTCAGCCTTCTCCTGGTCTCtgatcagctccttcacctcAGAGCACCTTGTCTCCATGGTGCGGATAAGCTCAGCAAAGATCCTCTCGCTGTCGTCCACGGCTGCCTGTGCAGAGAGCTTCAGAGAGTCCACAGCCTGTCTCAGCTCctgcatctccttctctctctcctggattcTCTgctgggatttctgttgtttctCCCCCACCTGCTTCTGTTTCTcagtcctctctgctgcagctgaGACTGTATCATGGCCTTTATGTTCATCCATGGTACATAGATAACAGATACACTGCTGATCGGTACGACAGtaaacctccagcagtttgtCATGTTGAGAACAGATCTTCTCCTGTAGTTGTGTGGAGGCTTTGACCAGCATGTGCTTCTTTAAGGCAGGGAAATTATAGTGAGGCTGgaggtgagtctcacagtaagagACCAGACACGCCAGACAGGACATGAGGGCTTTGTGTTTTCTCCCAGTGCAGAAATCACACTccacatctccaggtccagcaTAACAGTGAGCAGGAGGAGCAGCATGAGGAGCAGCATGAGGAGCAGCATGAGGAGCAGCatgaggagcagcaggaggagcagcaTGAAGAGCAGTATGTTTCAGTTTCTCCACCACTTTAGCCAGCAACGTGTTTCTGTTCAGAACAGGCCTTTGGACGAAGGTCTGTCGGCACTCTGGGCAGCTGTAAACACCTTTCAGTTCGTCCTGATCCCAGCAGTCCTCAATACAACCCATACAGTAGTTGTGTCCACAGGAAGTAGTCACCGGATCCTTCAGTATATCCAAGCAGATCGAACAGCTAAATGAATCCCGATCTTCAAAAAATGCCTCTGCCATTTTGACACTCACTAACAAACGGCG

Function

NR:

description
tripartite motif-containing protein 47-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2161032 False 2034 lncRNA 0.47 3 62481725 62484288
TU2161033 True 1928 lncRNA 0.47 3 62481725 62484288

Neighbor

gene id symbol gene type direction distance location
LOC118943938 LOC106577312 coding downstream 188704 62276439 ~ 62310445 (-)
LOC110532867 LOC106562881 coding downstream 207781 62258118 ~ 62273944 (-)
LOC118943937 NA coding downstream 219387 62259487 ~ 62262338 (-)
LOC118943933 LOC106592896 coding downstream 239021 62220901 ~ 62242704 (-)
LOC118943936 LOC106562881 coding downstream 272043 62207261 ~ 62209682 (-)
LOC118943941 LOC105008298 coding upstream 7593 62491881 ~ 62560536 (-)
LOC118936590 LOC106577388 coding upstream 76390 62560678 ~ 62570675 (-)
LOC118943942 LOC106577315 coding upstream 285747 62770035 ~ 62776655 (-)
LOC118943943 LOC102782193 coding upstream 296811 62781099 ~ 62876729 (-)
G1888918 NA non-coding downstream 60967 62420548 ~ 62420758 (-)
G1888885 NA non-coding downstream 66120 62411505 ~ 62415605 (-)
G1888913 NA non-coding downstream 73875 62407201 ~ 62407850 (-)
G1888907 NA non-coding downstream 83477 62397468 ~ 62398248 (-)
G1888893 NA non-coding downstream 100618 62379687 ~ 62381107 (-)
G1888948 NA non-coding upstream 10853 62495141 ~ 62495611 (-)
G1888950 NA non-coding upstream 15374 62499662 ~ 62500188 (-)
G1888952 NA non-coding upstream 17858 62502146 ~ 62503183 (-)
G1888968 NA non-coding upstream 63353 62547641 ~ 62552485 (-)
G1888973 NA non-coding upstream 92412 62576700 ~ 62576943 (-)
G1888836 LOC106562881 other downstream 214220 62260837 ~ 62267505 (-)
LOC118943840 NA other downstream 319336 62152136 ~ 62164324 (-)
G1887761 NA other downstream 1330555 61150056 ~ 61151170 (-)
G1887449 NA other downstream 1655935 60774110 ~ 60825790 (-)

Expression


Co-expression Network