XLOC_037906 (sytl5)


Basic Information

Item Value
gene id XLOC_037906
gene name sytl5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30323462 ~ 30363770 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074424
TCTTCCACTCCTGCCTCGGAGAGAAAGTGGGGTTTCCTTAATGTACCAGATTCAGATGCTGACACTACCAGCATCAACAGTCTGATGAGTGTGTACAGTGAGACGGGGGACTATGGCAGTGTTCGGGTTTCGGGGGAGATCCTGCTCAACATCTCTTACAGCTATAAAACAGGGGCTCTCAACGTGCTCGTCCGCGAGTGCCGCTGCCTAGCAACCGGAGATGAGAGGAGACAGCGCACGGATGCCTATGTTAAAACCTATCTGCTGCCAGACAAGTCCCGTCAAAGCAAGCGCAAAACCAGCATCAAAAGCAACAGCACAAACCCAGTGTTCAATGAGAACCTGAGGTACGTGGTCAGTCACTCTCAGCTGGAGACGCGGACGCTGCAGGTCTCAGTCTGGCATCATGATCGTTTTGGACACAACAACTTCCTGGGGGAAACAGAGCTCACCTTTGACTCCTGGGAGTTTGACACGCAGATAGAAGAATGGTTTGCTCTGCAGCCTAGAaTTGAGTCTGATTATGTGGACTCAGTGATGCACTATAAAGGTGAACTGACGGTGGTTTTGAAGTACATTCCTGCAGAGAGAAACGTCTCTCTGCCTCTGGACCAAGTACAAGTGAAAAAGGGATTTCTTAAAGGAAAGAAGAAGACCATCACTCTTCCTAAAGGAGGAATGGTGGAGCTGCTGGTCAAAGAGGCAAAAAACCTGACAGCCGTCAAAGGAGGCTCTTCTGACCCATTCGTCAAAGGATATCTGCTTCCGGATGACAAGAAGAGCACAAAGCACAAGACGGCGGTGGTGAAGCGCAGTGTAAACCCACGCTGGAATCACACGTTCACCTACTGCGGCCTGCAGCACAGTGATCTGGACAGTGTGTGTCTGGAGCTAACCGTATGGGACAGAGAGCCCTTCGCCAGCAATGTCTTCCTCGGTGGAGTAAGGCTCGGCGCCGGGACAGGTCTGAGTTATGGGAAGGAAGTGGACTGGAACGATGCCTACggggaggagcagcggctctggCAGCGCATGATTGACAACCCTGAGGTTCCTCAAGAGTGCACACTGATGCTGAGATCCAGCATGGCCAGGAGGAAGACGGACTGA
>TCONS_00074425
GCATTCACCAGGTGAAAAGGTTAACAATGCACTCACAGACAGAGTCTCAAGGCTCTGCCACGGTTGCCAAAGGATGAATGTGTTCGAGTGAAGGAGAGACAGATGACCTTTGTGTGGATATGAAGATGAACTGAAGCAATCCTTCATTCTGACTGCATTGATAAAGCATAATTATGGTTGTTTGGTGGCCGGTTGGATTGGCTGAGTGTCCTTGAGCATCCtttgagcattttttttaaatggtcatgGCGAAGAAAACCGAGTCCCTTAATCTTTCCTTCCTCCTGGAGCATGAAAGGCAGATGATCCTCAATGTCCTCCAGAAAGACGAAAAGCTCCGCAAACGAGAGGAGAAACGCATCAGAAAGTTGAAAAATGAACTTCTGGAGCTGAAGCGAGCCGGGCGGCGTAGTTCGGCAGATCAGCGTGAGTGTGCCATATGCCTGCGGGCACTGGGGCTTATCCTGCAGAGGGGTAATGTGTGCTCCAACTGTCAGAGGCGCATCTGCAACTTCTGTACCGCTACGCCTACAGGCAGCAGCTGCAAATGCACAGTGTGCGCAAAGACTGCGGAGCTGAAGGTGGTTACAGGAGAGTGGTTTCTGGAGGAGAGATCCAAGCGGTTTCAATCTGCCACTGTGCCCAGCTGTGATGTAGTCAAACAGTCCATCCTCAGCAGTCCTCCAGATGGAGGCTCTGCTAACAGACCATTAGAGATGGAGAGATCGTCCACGCCAAAGTCTGAAAGATCGGTTACGCCTCAATCCCAGAAAAGCACAGGGAAGAACAGAAAAGGGAAGAGAGCGGTTGCAGTGGAACCATCAGGTTTACCAACTGTACCCAATAATATGAGAGCACAAATGGCTAAAACGCCAACCCAGACAGAGGCAAGAAACAGGccTGATGGGGCAGAGAGCGTGTCTAGTATACAGAGCAGTGACAGCGTCCCTGAAAAGATGGCGGATGGGCGGAGACAAACAGATTCCAGCACACCCTCCATCGCCGTATCCAGAGCCTCCCTCTCATCAGATCGCAGTCGCTCAGAGGTGGACCTTAGTAATCCTGGTGAGGGATTGAGTGAAGATCCTCTGATCAGCCGGTGTCGCTCAGTTCCTGGACTCAACGATGGGGACTCGGATGAGGACATTGATGCGGTGTTATCAGCACACTACAAAACCAACCGGAGCGTCTGCAGTGCACAATCAATGACCAGCATCAACAGTCTGATGAGTGTGTACAGTGAGACGGGGGACTATGGCAGTGTTCGGGTTTCGGGGGAGATCCTGCTCAACATCTCTTACAGCTATAAAACAGGGGCTCTCAACGTGCTCGTCCGCGAGTGCCGCTGCCTAGCAACCGGAGATGAGAGGAGACAGCGCACGGATGCCTATGTTAAAACCTATCTGCTGCCAGACAAGTCCCGTCAAAGCAAGCGCAAAACCAGCATCAAAAGCAACAGCACAAACCCAGTGTTCAATGAGAACCTGAGGTACGTGGTCAGTCACTCTCAGCTGGAGACGCGGACGCTGCAGGTCTCAGTCTGGCATCATGATCGTTTTGGACACAACAACTTCCTGGGGGAAACAGAGCTCACCTTTGACTCCTGGGAGTTTGACACGCAGATAGAAGAATGGTTTGCTCTGCAGCCTAGAaTTGAGTCTGATTATGTGGACTCAGTGATGCACTATAAAGGTGAACTGACGGTGGTTTTGAAGTACATTCCTGCAGAGAGAAACGTCTCTCTGCCTCTGGACCAAGTACAAGTGAAAAAGGGATTTCTTAAAGGAAAGAAGAAGACCATCACTCTTCCTAAAGGAGGAATGGTGGAGCTGCTGGTCAAAGAGGCAAAAAACCTGACAGCCGTCAAAGGAGGCTCTTCTGACCCATTCGTCAAAGGATATCTGCTTCCGGATGACAAGAAGAGCACAAAGCACAAGACGGCGGTGGTGAAGCGCAGTGTAAACCCACGCTGGAATCACACGTTCACCTACTGCGGCCTGCAGCACAGTGATCTGGACAGTGTGTGTCTGGAGCTAACCGTATGGGACAGAGAGCCCTTCGCCAGCAATGTCTTCCTCGGTGGAGTAAGGCTCGGCGCCGGGACAGGTCTGAGTTATGGGAAGGAAGTGGACTGGAACGATGCCTACggggaggagcagcggctctggCAGCGCATGATTGACAACCCTGAGGTTCCTCAAGAGTGCACACTGATGCTGAGATCCAGCATGGCCAGGAGGAAGACGGACTGA
>TCONS_00074426
TCAGTCAGCGCTACTAACCACCGGTTCTTGACCGTGTAACAGCACTGCAGTTCACAGGATTTTCACGAGCGACCGCTGCACTGCAGgtgcttcggtttcccacacaagtccaaagatgtggtatgtgtgaattggGCATTCACCAGGTGAAAAGGTTAACAATGCACTCACAGACAGAGTCTCAAGGCTCTGCCACGGTTGCCAAAGGATGAATGTGTTCGAGTGAAGGAGAGACAGATGACCTTTGTGTGGATATGAAGATGAACTGAAGCAATCCTTCATTCTGACTGCATTGATAAAGCATAATTATGGTTGTTTGGTGGCCGGTTGGATTGGCTGAGTGTCCTTGAGCATCCtttgagcattttttttaaatggtcatgGCGAAGAAAACCGAGTCCCTTAATCTTTCCTTCCTCCTGGAGCATGAAAGGCAGATGATCCTCAATGTCCTCCAGAAAGACGAAAAGCTCCGCAAACGAGAGGAGAAACGCATCAGAAAGTTGAAAAATGAACTTCTGGAGCTGAAGCGAGCCGGGCGGCGTAGTTCGGCAGATCAGCGTGAGTGTGCCATATGCCTGCGGGCACTGGGGCTTATCCTGCAGAGGGGTAATGTGTGCTCCAACTGTCAGAGGCGCATCTGCAACTTCTGTACCGCTACGCCTACAGGCAGCAGCTGCAAATGCACAGTGTGCGCAAAGACTGCGGAGCTGAAGGTGGTTACAGGAGAGTGGTTTCTGGAGGAGAGATCCAAGCGGTTTCAATCTGCCACTGTGCCCAGCTGTGATGTAGTCAAACAGTCCATCCTCAGCAGTCCTCCAG

Function

symbol description
sytl5 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL5 (synaptotagmin like 5).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0005886 plasma membrane cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0005543 phospholipid binding molecular_function
GO:0042043 neurexin family protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-424 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL5 (synaptotagmin like 5).

Ensembl:

ensembl_id ENSDARG00000062135

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074424 False 1110 mRNA 0.52 8 30323462 30336125
TCONS_00074425 False 2252 mRNA 0.52 15 30323462 30346279
TCONS_00074426 True 822 mRNA 0.50 5 30343949 30363770

Neighbor

gene id symbol gene type direction distance location
XLOC_037905 BX571713.1 coding downstream 26671 30296675 ~ 30296791 (-)
XLOC_037904 otc coding downstream 49050 30268040 ~ 30274412 (-)
XLOC_037903 mid1ip1a coding downstream 59047 30263188 ~ 30264415 (-)
XLOC_037902 si:dkey-100n23.5 coding downstream 63950 30248571 ~ 30259512 (-)
XLOC_037901 SENP7 coding downstream 75428 30217828 ~ 30248034 (-)
XLOC_037907 asb11 coding upstream 897 30364667 ~ 30371247 (-)
XLOC_037908 piga coding upstream 10411 30374181 ~ 30385278 (-)
XLOC_037909 gja8a coding upstream 66418 30430188 ~ 30432778 (-)
XLOC_037910 NA coding upstream 94934 30458704 ~ 30474478 (-)
XLOC_037911 NA coding upstream 126735 30490505 ~ 30503378 (-)
XLOC_037898 BX322575.1 non-coding downstream 215502 30104920 ~ 30107960 (-)
XLOC_037896 CR749776.1 non-coding downstream 515398 29807947 ~ 29808064 (-)
XLOC_037894 NA non-coding downstream 616205 29682197 ~ 29707257 (-)
XLOC_037893 NA non-coding downstream 660837 29652041 ~ 29662625 (-)
XLOC_037912 NA non-coding upstream 154147 30517917 ~ 30525279 (-)
XLOC_037915 BX571809.1 non-coding upstream 313700 30677470 ~ 30680018 (-)
XLOC_037916 BX571809.2 non-coding upstream 344069 30707839 ~ 30707954 (-)

Expression


Co-expression Network