LOC110503517 (LOC106612445)


Basic Information

Item Value
gene id LOC110503517
gene name LOC106612445
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 314390 ~ 331175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581866.2
TAATACACACTCCCTGAAAACGTTTCACATTACATTGTCAGGAACATAGTTTGTTCATATAGACTCTAGCTGCTCTCTGGTAGACTTAACAGCAAGACCCTATTGACATTGCCTGTGATTTTAAGCAGAAGGCCTCTCTACCAGCCAGAGGACACAATTCCAGGAGGACACTAAGATTTCAGCAATTGAGAAACTCACAAAAGTTAGAAAATATGCCTCCAAGTTTGACAGCTGCACTGCAAGAGTGGGAAAGTCTAGAGAAAGAGTATCATCAGATTCAGGAGAGCCACCGGCTATACTTGCAGAAACTAGAGGAAGTTTCCAAGCTGCAGAGTAATTGCTCTTCGTCTATCGCCCGCCAGCGGAGTAGACTTAAGGACATGTCTCAGTTAATGAAGAAATGCAATaaggagagactgacagaggagGATGTAAAAACCTTGGATGAAATCAAGGAGCACATCAAAGCAAGACCCAACACTTTCTTTGAAATGGAGGCTTTCCTTCCAAAGAAAAATGGGTTGTATCTCAATCTTGTTCTGGGCAATGTAAGCGTGACTCTTCTGAGCAAACAGTCAAAATTTGCCTACAAAGATGAGTATGAGAAATTCAAGCTGTACCTCACAGTTATACTGCTCCTATTCGCCTTCATGTGTTATTGCTTTGTGAGCTACAGATTTGTTGACGCAATCCTCAATTTCTTGCTGGTGTGGTACTACTGCACCCTCACCGTACGGGAGAGCATCCTCATCAGCAACGGGTCCAGGATCAAAGGCTGGTGGGTTTTCCATCATTACGTCTCAGCCTTTCTGTCTGGAGTCATGCTGACATGGCCTGATGGATACCTGTACCAGAATTTCAGGAACCAATTCCTCGCCTACTCTTTGTATCAAAGCATTGTTCACTGTAtgcagtactactatcagagcgGCTGTCTGTACAGACTAAGAACCCTGGGAGAAAGACACAACATGGACCTGACTGTGGAAGGATTTCAGTCCTGGATGTGGCAAGGGCTGACATTTCTTCTGCCCTTCCTGTTTTTTGGTCATTTTTGGCAACTCTACAACGGACTCTCTCTGTTCAGGATGGCTCGGCTCCCAGACTGTCAAGAGTGGCAGGTCTCAATGTGTGGAATCTCTTTCCTCATTCTGTTCATGGGCAACTTCCTCACTACTGTTGCAGTAGTCCGCACCAAGCTCAAGAGCAAGGACCAGGCAAAATCCAAGGGTCAGTGAGATGAAGAGGATACACAGAAACTGCATCCGCTGGTTCATCCTATAGGAGCTTCTCGGGAAACTTTCTATAATCATGGCTCATTTACTAGTGACAGAGGATCATGGGCAGTATTCAATGATCCCCAACTTTGGTTGCTTTGGGGTTGCTACTGTATAGATTTGTGATTTGGATAAATATAAAGATAGTTTCTGCTCAATATAATAATGGCACAGCAGTTTAGGGTGTGACTTAGACATTTCAGAAGAATTTCTACTAAATTAAAAGGACAGCAGAATAGTCAGTGTGATTGTGCAATAACATGGCCTCTTATTGCTAAAATAATAAATTATATACTGTGGACCTATCTCATA

Function

NR:

description
transmembrane protein 120A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581866.2 True 1589 mRNA 0.43 12 314390 331175
Loading

Neighbor

gene id symbol gene type direction distance location
pgm2l1 pgm2l1 coding upstream 6591 282138 ~ 307799 (+)
LOC110503488 LOC106580673 coding upstream 32679 281041 ~ 281711 (+)
porb LOC106612446 coding downstream 140 331315 ~ 387127 (+)
taf15 LOC106612447 coding downstream 59866 391041 ~ 406349 (+)
LOC110503519 LOC104924156 coding downstream 101270 432445 ~ 460397 (+)
trnaa-ugc-177 NA coding downstream 115769 446944 ~ 447014 (+)
LOC110503520 LOC106612450 coding downstream 129835 461010 ~ 476660 (+)
G1889355 NA non-coding upstream 42860 271218 ~ 271530 (+)
G1889354 NA non-coding upstream 43335 270847 ~ 271055 (+)
G1889336 NA non-coding upstream 58885 254758 ~ 255505 (+)
G1889301 spcs2 non-coding upstream 61025 194375 ~ 253365 (+)
G1889284 NA non-coding upstream 144310 168281 ~ 170080 (+)
G1889383 NA non-coding downstream 58535 389710 ~ 389932 (+)
G1889438 LOC106580682 non-coding downstream 221132 552307 ~ 568281 (+)
G1889475 NA non-coding downstream 225960 557135 ~ 559580 (+)
G1890009 NA non-coding downstream 496820 827995 ~ 828200 (+)
G1890160 sik2 non-coding downstream 789444 1120619 ~ 1124351 (+)
spa17 spa17 other downstream 1296346 1611442 ~ 1635016 (+)
LOC110503556 clasrp other downstream 2482263 2803171 ~ 2820422 (+)
fosb fosb other downstream 2620729 2951862 ~ 2961060 (+)
sipa1l3 sipa1l3 other downstream 2744261 3075396 ~ 3173993 (+)
G1892702 NA other downstream 2939021 3270196 ~ 3302590 (+)

Expression

LOC110503517(LOC106612445) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110503517(LOC106612445) Expression in each Bioproject

Bar chart with 21 bars.
LOC110503517(LOC106612445) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network