taf15 (LOC106612447)


Basic Information

Item Value
gene id taf15
gene name LOC106612447
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 391041 ~ 406349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581868.2
TACACAGAAGTTGGTTCAACCCAGCGGCAGGTCAGAGTTCATAATTGCCGCAGTGTGTGCGGCTGTGCGCTGATGTTACTGGGATTTTAATTTGTTGAAAAGTGATTCATCGATTTTTTTTAGAAAAGAGAATGGCCTCCGATTCGGGTTACGGTCAGCCTGGCGCTCCAAGCTATGGAACGTATCCTCCTGCTCAGCAGAGTGGGCAGGCCTACGGTCAAGGAAATGGAAGTGGCTCGTATGGTGGACAGAGTTACACTGGCTATGGACAGTCTGAAAGTTATGGCCAAACAACACAGGCGGCAAGTTATGGCCAGCCTTATGATGGCTTTGGGCAACAAGGCTCTGATTCCGCTGCTGGGTATGGTGGCGCTGACAAGTCATCATACAGTCAGCCGAGTTCCTACGGTGGCGCCGCTGGTGGCGGCTCTTATGGACAAGCTCAAGGCGGCTACAGAGGTCGAAGTGAAGGTGAAGGCGGTCAGGGCAGGAGGTATGGTGGAGATGATGGGGGCTCAGACAGGGGCTCTTCTGACGGGTATAGAGGCCGAGGGCGTGGTGGGTACGAGCGTGGGGGATACGACAGGGGTGGAAGAGGCGGCCCTCCATCTGGTATGGGAGGTGGTGACCGTGGTGGCTACAAAAATTACGGTGGTCCTCGAGACTACGGCTCAAGGGATGAACCAACTGGAGGTAGTGGTGGTAGCCAAGGTAGCGGCAGCGGTGGGGAACAGGACAACTCTGACAACAACACCATCTTTGTCCAGGGACTGGGAGAAGATGTCACAAGTGATGAAGTGGGCAACTACTTCAAACAGATTGGGATCATTAAGTTGAACAAGAAGACTGGCTTGCCCATGATCAACCTGTACTCTGACAAGGCTACTGGAAGACTGAAGGGAGAGGCCACTGTCTCATTTGATGATCCACCTTCTGCCAAAGCGGCCATTGAGTGGTTTGACGGCAAAGAATTTCAAGGGAAACCCCTCAAAGTGTCTTTTGCCACCCGAAGAGCCGAGTTCACGCAGAGGGGTGGCggtgcagcaggaggaggaggaggaagaggaggaggagGTTTTGGCGGTCGTGGTCGTGGACGTGGgtttggaggtggtggtggtggtggtggacccAACTTTGACATCAAGGGAGGGGACTGGCCATGTCCTAACAGTTCTTGTGGCAACATGAACTTTGCGCGTAGGTACGAATGCAACAAGTGTGGCACACCGAAACCAGGGGACAGCGGAGGAGATCGTGGTGGTGGAGGCCGAGGGTATGGTGGTGACAGGGGCGGCGGGTACAGAGGCCGTGGGGGATTCCGTGGAGGTGACCGCGGTGGTTATGGCGGAGGTGGATATGGTGGTGACAGGGGCTACAAGATGGGAGGAAGAGGTGACCATAGAGAAGACAGAAGAGACCGGCCATACTAAGGATTCACATGGACACCATTCCAGAATGCCcaggggttgggttgggttagtgGGAAGGGAGTGGGGGGGATTGATCTACACTTTAATTTGCATACCTTTCATTACCAATGCATCACATGTATTGCTTCTGATCTGTCTTGTCGAGAGGTCGGGGAAATATGTGCAACTACTGTGAAAGGACTTTTGTGCTGATAAGCAGGGTTGTAGGTGTAGAAGGGGGCAGGGtcaaatgtcttttttttttttttcatttccctGATTCTACTAGGTCCAGGCATCGTGAGGTAGACTTCGTATCATTGTTTTGTCAAATTTAAATGAACAGTTTTATTTGGGTTTCTCTTTTTTCCAAATGATATTAAACTGTTCTGATCTTAGTGTC
>XM_021581872.2
TACACAGAAGTTGGTTCAACCCAGCGGCAGGTCAGAGTTCATAATTGCCGCAGTGTGTGCGGCTGTGCGCTGATGTTACTGGGATTTTAATTTGTTGAAAAGTGATTCATCGATTTTTTTTAGAAAAGAGAATGGCCTCCGATTCGGGTTACGGTCAGCCTGGCGCTCCAAGCTATGGAACGTATCCTCCTGCTCAGCAGAGTGGGCAGGCCTACGGTCAAGGAAATGGAAGTGGCTCGTATGGTGGACAGAGTTACACTGGCTATGGACAGTCTGAAAGTTATGGCCAAACAACACAGGCGGCAAGTTATGGCCAGCCTTATGATGGCTTTGGGCAACAAGGCTCTGATTCCGCTGCTGGGTATGGTGGCGCTGACAAGTCATCATACAGTCAGCCGAGTTCCTACGGTGGCGCCGCTGGTGGCGGCTCTTATGGACAAGCTCAAGGCGGCTACAGAGGTCGAAGTGAAGGTCCTCGAGACTACGGCTCAAGGGATGAACCAACTGGAGGTAGTGGTGGTAGCCAAGGTAGCGGCAGCGGTGGGGAACAGGACAACTCTGACAACAACACCATCTTTGTCCAGGGACTGGGAGAAGATGTCACAAGTGATGAAGTGGGCAACTACTTCAAACAGATTGGGATCATTAAGTTGAACAAGAAGACTGGCTTGCCCATGATCAACCTGTACTCTGACAAGGCTACTGGAAGACTGAAGGGAGAGGCCACTGTCTCATTTGATGATCCACCTTCTGCCAAAGCGGCCATTGAGTGGTTTGACGGCAAAGAATTTCAAGGGAAACCCCTCAAAGTGTCTTTTGCCACCCGAAGAGCCGAGTTCACGCAGAGGGGTGGCggtgcagcaggaggaggaggaggaagaggaggaggagGTTTTGGCGGTCGTGGTCGTGGACGTGGgtttggaggtggtggtggtggtggtggacccAACTTTGACATCAAGGGAGGGGACTGGCCATGTCCTAACAGTTCTTGTGGCAACATGAACTTTGCGCGTAGGTACGAATGCAACAAGTGTGGCACACCGAAACCAGGGGACAGCGGAGGAGATCGTGGTGGTGGAGGCCGAGGGTATGGTGGTGACAGGGGCGGCGGGTACAGAGGCCGTGGGGGATTCCGTGGAGGTGACCGCGGTGGTTATGGCGGAGGTGGATATGGTGGTGACAGGGGCTACAAGATGGGAGGAAGAGGTGACCATAGAGAAGACAGAAGAGACCGGCCATACTAAGGATTCACATGGACACCATTCCAGAATGCCcaggggttgggttgggttagtgGGAAGGGAGTGGGGGGGATTGATCTACACTTTAATTTGCATACCTTTCATTACCAATGCATCACATGTATTGCTTCTGATCTGTCTTGTCGAGAGGTCGGGGAAATATGTGCAACTACTGTGAAAGGACTTTTGTGCTGATAAGCAGGGTTGTAGGTGTAGAAGGGGGCAGGGtcaaatgtcttttttttttttttcatttccctGATTCTACTAGGTCCAGGCATCGTGAGGTAGACTTCGTATCATTGTTTTGTCAAATTTAAATGAACAGTTTTATTTGGGTTTCTCTTTTTTCCAAATGATATTAAACTGTTCTGATCTTAGTGTC
>XM_021581867.2
ACACAGAAGTTGGTTCAACCCAGCGGCAGGTCAGAGTTCATAATTGCCGCAGTGTGTGCGGCTGTGCGCTGATGTTACTGGGATTTTAATTTGTTGAAAAGTGATTCATCGATTTTTTTTAGAAAAGAGAATGGCCTCCGATTCGGGTTACGGTCAGCCTGGCGCTCCAAGCTATGGAACGTATCCTCCTGCTCAGCAGAGTGGGCAGGCCTACGGTCAAGGAAATGGAAGTGGCTCGTATGGTGGACAGAGTTACACTGGCTATGGACAGTCTGCAGAAAGTTATGGCCAAACAACACAGGCGGCAAGTTATGGCCAGCCTTATGATGGCTTTGGGCAACAAGGCTCTGATTCCGCTGCTGGGTATGGTGGCGCTGACAAGTCATCATACAGTCAGCCGAGTTCCTACGGTGGCGCCGCTGGTGGCGGCTCTTATGGACAAGCTCAAGGCGGCTACAGAGGTCGAAGTGAAGGTGAAGGCGGTCAGGGCAGGAGGTATGGTGGAGATGATGGGGGCTCAGACAGGGGCTCTTCTGACGGGTATAGAGGCCGAGGGCGTGGTGGGTACGAGCGTGGGGGATACGACAGGGGTGGAAGAGGCGGCCCTCCATCTGGTATGGGAGGTGGTGACCGTGGTGGCTACAAAAATTACGGTGGTCCTCGAGACTACGGCTCAAGGGATGAACCAACTGGAGGTAGTGGTGGTAGCCAAGGTAGCGGCAGCGGTGGGGAACAGGACAACTCTGACAACAACACCATCTTTGTCCAGGGACTGGGAGAAGATGTCACAAGTGATGAAGTGGGCAACTACTTCAAACAGATTGGGATCATTAAGTTGAACAAGAAGACTGGCTTGCCCATGATCAACCTGTACTCTGACAAGGCTACTGGAAGACTGAAGGGAGAGGCCACTGTCTCATTTGATGATCCACCTTCTGCCAAAGCGGCCATTGAGTGGTTTGACGGCAAAGAATTTCAAGGGAAACCCCTCAAAGTGTCTTTTGCCACCCGAAGAGCCGAGTTCACGCAGAGGGGTGGCggtgcagcaggaggaggaggaggaagaggaggaggagGTTTTGGCGGTCGTGGTCGTGGACGTGGgtttggaggtggtggtggtggtggtggacccAACTTTGACATCAAGGGAGGGGACTGGCCATGTCCTAACAGTTCTTGTGGCAACATGAACTTTGCGCGTAGGTACGAATGCAACAAGTGTGGCACACCGAAACCAGGGGACAGCGGAGGAGATCGTGGTGGTGGAGGCCGAGGGTATGGTGGTGACAGGGGCGGCGGGTACAGAGGCCGTGGGGGATTCCGTGGAGGTGACCGCGGTGGTTATGGCGGAGGTGGATATGGTGGTGACAGGGGCTACAAGATGGGAGGAAGAGGTGACCATAGAGAAGACAGAAGAGACCGGCCATACTAAGGATTCACATGGACACCATTCCAGAATGCCcaggggttgggttgggttagtgGGAAGGGAGTGGGGGGGATTGATCTACACTTTAATTTGCATACCTTTCATTACCAATGCATCACATGTATTGCTTCTGATCTGTCTTGTCGAGAGGTCGGGGAAATATGTGCAACTACTGTGAAAGGACTTTTGTGCTGATAAGCAGGGTTGTAGGTGTAGAAGGGGGCAGGGtcaaatgtcttttttttttttttcatttccctGATTCTACTAGGTCCAGGCATCGTGAGGTAGACTTCGTATCATTGTTTTGTCAAATTTAAATGAACAGTTTTATTTGGGTTTCTCTTTTTTCCAAATGATATTAAACTGTTCTGATCTTAGTGTC
>XM_021581871.2
ACACAGAAGTTGGTTCAACCCAGCGGCAGGTCAGAGTTCATAATTGCCGCAGTGTGTGCGGCTGTGCGCTGATGTTACTGGGATTTTAATTTGTTGAAAAGTGATTCATCGATTTTTTTTAGAAAAGAGAATGGCCTCCGATTCGGGTTACGGTCAGCCTGGCGCTCCAAGCTATGGAACGTATCCTCCTGCTCAGCAGAGTGGGCAGGCCTACGGTCAAGGAAATGGAAGTGGCTCGTATGGTGGACAGAGTTACACTGGCTATGGACAGTCTGCAGAAAGTTATGGCCAAACAACACAGGCGGCAAGTTATGGCCAGCCTTATGATGGCTTTGGGCAACAAGGCTCTGATTCCGCTGCTGGGTATGGTGGCGCTGACAAGTCATCATACAGTCAGCCGAGTTCCTACGGTGGCGCCGCTGGTGGCGGCTCTTATGGACAAGCTCAAGGCGGCTACAGAGGTCGAAGTGAAGGTCCTCGAGACTACGGCTCAAGGGATGAACCAACTGGAGGTAGTGGTGGTAGCCAAGGTAGCGGCAGCGGTGGGGAACAGGACAACTCTGACAACAACACCATCTTTGTCCAGGGACTGGGAGAAGATGTCACAAGTGATGAAGTGGGCAACTACTTCAAACAGATTGGGATCATTAAGTTGAACAAGAAGACTGGCTTGCCCATGATCAACCTGTACTCTGACAAGGCTACTGGAAGACTGAAGGGAGAGGCCACTGTCTCATTTGATGATCCACCTTCTGCCAAAGCGGCCATTGAGTGGTTTGACGGCAAAGAATTTCAAGGGAAACCCCTCAAAGTGTCTTTTGCCACCCGAAGAGCCGAGTTCACGCAGAGGGGTGGCggtgcagcaggaggaggaggaggaagaggaggaggagGTTTTGGCGGTCGTGGTCGTGGACGTGGgtttggaggtggtggtggtggtggtggacccAACTTTGACATCAAGGGAGGGGACTGGCCATGTCCTAACAGTTCTTGTGGCAACATGAACTTTGCGCGTAGGTACGAATGCAACAAGTGTGGCACACCGAAACCAGGGGACAGCGGAGGAGATCGTGGTGGTGGAGGCCGAGGGTATGGTGGTGACAGGGGCGGCGGGTACAGAGGCCGTGGGGGATTCCGTGGAGGTGACCGCGGTGGTTATGGCGGAGGTGGATATGGTGGTGACAGGGGCTACAAGATGGGAGGAAGAGGTGACCATAGAGAAGACAGAAGAGACCGGCCATACTAAGGATTCACATGGACACCATTCCAGAATGCCcaggggttgggttgggttagtgGGAAGGGAGTGGGGGGGATTGATCTACACTTTAATTTGCATACCTTTCATTACCAATGCATCACATGTATTGCTTCTGATCTGTCTTGTCGAGAGGTCGGGGAAATATGTGCAACTACTGTGAAAGGACTTTTGTGCTGATAAGCAGGGTTGTAGGTGTAGAAGGGGGCAGGGtcaaatgtcttttttttttttttcatttccctGATTCTACTAGGTCCAGGCATCGTGAGGTAGACTTCGTATCATTGTTTTGTCAAATTTAAATGAACAGTTTTATTTGGGTTTCTCTTTTTTCCAAATGATATTAAACTGTTCTGATCTTAGTGTC

Function

NR:

description
RNA-binding protein FUS-like isoform X3

GO: NA

KEGG:

id description
K14651 TAF15, NPL3; transcription initiation factor TFIID subunit 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581868.2 False 1815 mRNA 0.52 16 391041 406349
XM_021581872.2 False 1632 mRNA 0.51 14 391041 406349
XM_021581867.2 False 1817 mRNA 0.52 16 391042 406349
XM_021581871.2 True 1634 mRNA 0.51 14 391042 406349

Neighbor

gene id symbol gene type direction distance location
porb LOC106612446 coding upstream 3914 331315 ~ 387127 (+)
LOC110503517 LOC106612445 coding upstream 59866 314390 ~ 331175 (+)
pgm2l1 pgm2l1 coding upstream 83242 282138 ~ 307799 (+)
LOC110503488 LOC106580673 coding upstream 109330 281041 ~ 281711 (+)
LOC110503519 LOC104924156 coding downstream 26096 432445 ~ 460397 (+)
trnaa-ugc-177 NA coding downstream 40595 446944 ~ 447014 (+)
LOC110503520 LOC106612450 coding downstream 54661 461010 ~ 476660 (+)
LOC110503521 LOC106612451 coding downstream 86862 493211 ~ 503178 (+)
rsrc1 rsrc1 coding downstream 453331 859680 ~ 1046725 (+)
G1889383 NA non-coding upstream 1109 389710 ~ 389932 (+)
G1889355 NA non-coding upstream 119511 271218 ~ 271530 (+)
G1889354 NA non-coding upstream 119986 270847 ~ 271055 (+)
G1889336 NA non-coding upstream 135536 254758 ~ 255505 (+)
G1889301 spcs2 non-coding upstream 137676 194375 ~ 253365 (+)
G1889438 LOC106580682 non-coding downstream 145958 552307 ~ 568281 (+)
G1889475 NA non-coding downstream 150786 557135 ~ 559580 (+)
G1890009 NA non-coding downstream 421646 827995 ~ 828200 (+)
G1890160 sik2 non-coding downstream 714270 1120619 ~ 1124351 (+)
G1890432 NA non-coding downstream 790864 1197213 ~ 1197472 (+)
spa17 spa17 other downstream 1221172 1611442 ~ 1635016 (+)
LOC110503556 clasrp other downstream 2407089 2803171 ~ 2820422 (+)
fosb fosb other downstream 2545555 2951862 ~ 2961060 (+)
sipa1l3 sipa1l3 other downstream 2669087 3075396 ~ 3173993 (+)
G1892702 NA other downstream 2863847 3270196 ~ 3302590 (+)

Expression

taf15(LOC106612447) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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taf15(LOC106612447) Expression in each Bioproject

Bar chart with 21 bars.
taf15(LOC106612447) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network