XLOC_037911


Basic Information

Item Value
gene id XLOC_037911
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30490505 ~ 30503378 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074431
TGTTCTTTAAAGAGTACTCCAATACGCATCGAGGAAGGGAGGGGGTGAGGCAATTGGGCGTCGAAGCGAAGTTAGGTTGACGAATGGTAACCAACAAGAGGACTACGAGTTAAAAATTGGATTATTTAATCATCTGACTGGCTTTAACGTTACGTGAACGGACGCGGAGCCCGTTAAGGAGAACACACGGATGATATTGTCGGTTCTGGAGGCCGTCGTTGCGTTTGGATGTGTTTCGGGAAGACCTCCGCTTCTCGCGCATAGGTCGCGCGACAGATTAGCTGCGGCGTGCTGAGAGACCGAGTTCAAGAAATCACAAGTTGCACGCGCGAGAGGAGGAAGACCCTTCCGCGCGATTTTACTGCTGCCCGCCCGACAAATGTGGACGCTTGGCTCTCCTATTATGACGTAGTTGGCGGTTCGTGACACATTGTTGACTCAAGTGTAGTTACATCTTATGAAAGAGGCCCTAAAGTACCTGGCTAAATGATTGTAATTTCATGTTAACGGATGACAACCACTGCAGTTTTGACAGATTCGGATATTTCGATATATTTGGCATCGGCTTGTTTTTGTTCGTGATTCTGTTTAATTCTGTTTCCCAGGACAGCTGGGCTGTTGTAAAACTTGCAATCCGCGTCTCcgctttttaatttattttgaataatcAACATTGATCGAAAATGGCTTTTGGTGGTGTTATTTGCTTGTCTTGAAATCAATCTTTCATGCAGCCTTTTACGTTTGATAGGATGTGAAAATGTCTGGCACATCTTAAGCACCAAAGATGATGGACTTTACAGTAACGTTGAAATATTTCGACTTCTAATTCAGTGTTTCATATCAATAACAACCGGGAGACCTGTTATAGTGAAACTGTTATTTATTCATAATCGATTTAACTTGCTTCTTAAAAATTCATTTGGAGGATTTTGCTGTGAACTTTTAACTTCATAGACACTTAGAGCATCCTCTGGATTTACAGAAGTCTCAATGTCGGTGGATGAAGCCTGTTTTAAAAGTTCAGCATTTTCCACACAGGGGAAACGATTATAAACAAGCTGCTCTTAAAGTGAGAGTGTTTTGAGAAAGAACACTGGTCAAAATGGCAAGTGAATGCACCTACGACTCTGATGACACCTTTCGCACTACTAAACACTCAGCGGACGAGCAGCGGGCACGCGCGGGATTTGTGAACGGCGACTGCGCGTCCGTCTCTACTTCAGCCCTCTTCGAGGTCATCGACGGCTCGCTTTTCCGCAAAAAGTTGGAGAAGGGTTTTGTCCAGTATCGGGAGGTTCTGGCTGAAGATAAGCGACTTCAGTCTATTGTCACCTTCCACGAGAAGAGACCCGGCAAGTCGCACCACACCCTCGAGGACACATACAGGCTGGTGGCCGAGCACTACTGGTGGGAAGGAATGTATTTTCAGGTCAGAGACTATGTCTTAGGCTGTGAGGAATGCCAACTCAGTCAGTCTGAAAGATCCGTGTGTTCTGATGTAAGTCTTATCTCCAGAATGGTGGAATCCCATAGTCATGAAGTCTTAAGTAAACTCAATAGCCAACGGGAAGCAGGACTCTTTTGTGATATTACACTGAAAACTGGTGGCGGCCAGTCTTTCGTCGCCCATAAGGCAGTCCTTGCTGCAGTGAGTGAATACTTTCAGGAGTTATTTACTGAAATGGACTCAGCCACTGATCCCCAGTCACATGTTGACCTCACAGGTTTCAGTGAACAGAGCTTGCTTGCTCTCTTAGAGTTCTGTTACACTTCCACCCTCAATCTGAATCTGGATATTTTGACAGAGGTTTGTACCATGGCCCGCCATCTACGCATGTGGCCTGCTCTCGAGGCTTGCTCTGCTATCAAAAGGGAGCGAGAAACTTGCCAGTTACACCCCCTGCTGAGTATTCCCGGAGAACCAAATAATTCAGTGGCTGGACCTATTAGGAAAGAGCACTCCTTAACTTCAGGGGGGAAAGTGGGACACAAGAGGAGGAGACCAAATGAGGAAGGAGAAGGCTCAGGTTCTTCCTGTTGCATCCAAGCACAGTACAGAGAGCACACTGTTGATAGGCTGACAGATGAGTCTGAAACAGAAACCTCAAACCCTCAGTTTCAGTGCCAACCCCTGTCTAGTTTTCAAGTTGAGGAAAACTGCTTTCCGTGCAGTCCAAATCGCAGAATGAAACTTATGGACTTCAAATCTCCATCCTGCAAGAAAAAAACATCCACCCGCCCTACATCATCTGTCATCTCAACATCTCCTTGCACATCAACTCGTTCTTCCTCTCCATCACGTCGTCTGCTTCGTTCTTCACCTGGCGCTGCACTTGCTTTGCGCAGACTCCTGCCCAAAATTGACCTCTCTACCAAAAGAAAGAAGAAGACCTCTTCTTACCGGGTATACAAGCCCCAGTATGAAATCTCAGCGACTTCGTCCAAGTCTCAGGCAAAATCTTTCACTCGTGTTACCTCACTAAATGTAAAGCAGGAGGATGTGGAGGAGGATGTATGTAAACAAGTCCCTCAGGATGAGGTGCATAGCCCACGTGCTCAGGAGAAATACCGCCTTCTTAGCTTTCTTGGCTTGCGGAGAAAATCTTTAGTTCCAGGTCCAGAGGAACTGTCTGGCTGGGGCCAGAAAAAACGACTAAGGAAGTTAAAAATCAGTGACTATTCGCTCACAGCTCGACGTAAACCTCGTGCACAAGATGTCCCACTGAGCTTTGGGACGAGTTTAGGGGTACTTGCTGCTGTTAATCCTACTCTGTCTCTCTGTGACATGAGCAGAATGGACTTGCTGAACAGACCAGTGAAAGTAGAACTCCAAGAATCTTGGAATCAACAAAGGTCTAAAAGGAAAAGACATGATCCTGTTCAAACAATTACAAGAACTACACGTAGCAGATCATTGCTGCAGACAGACTCCAGTGCAATCGATTGTCCTATCAGACGTCTCCACAAAAATCAAGACAAAGCACCTTCTTCACCTGCACGAAGAGGTCGAGGACCAGCACACAATCCCTCTTCCCCTTCAAAAAGCACTATGCTTAGAATAAAACGAGACTCTTCAGGCAGTGCCATCCTGCAGCCTATTCATCGTCGCAATACTGTCTGCAGCTCCCAGGGAACTCCATCTAAAGGAGTAGGACGTAGGGGTCGCCCACCAGCAGATCGCACTGTAAGGGTAGCCACAACAATGTCGCGGCACAAACCTGGGCCAACAGGCAAACCTAAGAGTTCAAAACAAGtggaaagcaaaacaaaatgcagtCGTGTTTCAGGAATACCTCAAGGAAGACACAGCAGAACAGAAAGAGGAACACAGGTAAAGGAGAATAGAAAGGTTATGAAATGTGCAACCAGAAAAAAGACTCCCGAGGTTCAGTATAATGTTATGAACTGGGATGGTTCCAACCATCAGCATCTTCATAGCCATCCTCTTTACAAAACCATAAAGGAAGAGCCAGCTGACCCATTGCCCCTAGCACAGCCATTCCCAACTAATGATCCCTCAGATTTGGGAAAGCGTCAGAGCAAACCACCCGTCAAACTGTTGGATCAAGGCTTCCTCTTTGGCCTCTGTCGACCACCAAGTGGCATCAAACGAGAGGAGGAGAGTGTGGACATCTACCTGACTCGGTCAGTGTCTCACGGAAGTAGTTCCAATTGTGATTTGTCACCTGGGAAGAAAGATCGGTTAAGGGCCAGGTTAATGCCAGATCGGACGGGTCTAAATGGGCCTCACTGGGCTGGACTTGGCAACAGACAATCACCCTTTTCCCAAAGGATTGGCATTCAAGTGAAGACGGAGAGAAATGAAACGAACACATCACACGTTAGCCGAAGTTCAAGACACCCCCAGGTCAGTAAGAGGAGTTGCAAAGTGACAAAAGAGCCTACAAAGACAAAGaATGTAAATAAGCTGCTTCCTCTAAGCAGTCGCCGTTCCGTCCTACTGGAATCTATCCGACAGTCACGTCTGAAACAGCAGAAGGGTCCTCAAGACAAGTCCTCCAAAGGCCCACATGCTTGCCTGCAGTGTAGAGCCTCCTACAGGGACTGTGATGCCCTTATAATGCACCAGATCAAGCATATTGAAGGCAAACACTGGCCCTGCCCGTTATGCAGCAAGACGTTCTTCAGACAGAGAAATGTGAGAAATCACATAAGGACACACAATACCAAGCTCTACAAATGCCGCCAGTGCATTGCTGCTCAGTGAGGCGAAAAGCTACAGGATAAAATGAAGAGGAACAAAGCTTTGTTCTTTAAATAACGCTGTAAATACCAAGGATCTGTGACGAATGACAATAAGGTTGAGTTTATTGATGTAAATAATTTGATGATGGTTTAAGTGGTCTTTTTGCtcaataattgttgttgttatttaagtAACTAAACTGAAGTTGCTTCGGAATTGATACAGATATGTTGAAGCTGAACTTGAACCCATGATGTTTTTTTCTCAGGGGCGAAGCCTGATAGTCAAGGTGATATATGTGTATAATGAGAAATGTTTAGAATGCTTTAAATTTgttaatactaatgtaattactacagttgttattactattgttattattattatgattattttttataaatggcaTAATCTTGAGTGCACTTAATGTTAGCTTTGTTTTGAAACCTAAGAAAGAAGCGATGGACTGGGATGTACTTGAATGATTGTTGGAGTGGAGCCGATGGACTGTCTGGCAATGTTTTAGAGAAACCTCTTACAGAAATTAGTCAGGAATTTTTCAATGAAGGTTGGGTAAATGGGGTTCGAGTTGTTCTAGAAATCACAGAATGGTTAGATGCCATTTTGTGAAAACATTTGTTTGACTACAACTTTTCAATTTGAGAGTTACTGTGTCTTTCAAAACAAGGGAATCCCAAAATGTCTAATGTGATTTTGTTCccccctttctcctcctcctcctttgaTAATTCCTTGTCTGACTTTTTATGCATATCCTTCTTTAACACAAAATGCAATGGACTTATATGAAGTTTTAAATGTTGAGGTGTTTTGTCTGAAAACACAAGTTTAAAATGTAGAACGACCAAATAGCcatataaataaattttgcattttaaaattt
>TCONS_00074432
GAGAGTGTGGACATCTACCTGACTCGGTCAGTGTCTCACGGAAGTAGTTCCAATTGTGATTTGTCACCTGGGAAGAAAGATCGGTTAAGGGCCAGGTTAATGCCAGATCGGACGGGTCTAAATGGGCCTCACTGGGCTGGACTTGGCAACAGACAATCACCCTTTTCCCAAAGGATTGGCATTCAAGTGAAGACGGAGAGAAATGAAACGAACACATCACACGTTAGCCGAAGTTCAAGACACCCCCAGGTCAGTAAGAGGAGTTGCAAAGTGACAAAAGAGCCTACAAAGACAAAGaATGTAAATAAGCTGCTTCCTCTAAGCAGTCGCCGTTCCGTCCTACTGGAATCTATCCGACAGTCACGTCTGAAACAGCAGAAGGGTCCTCAAGACAAGTCCTCCAAAGGCCCACATGCTTGCCTGCAGTGTAGAGCCTCCTACAGGGACTGTGATGCCCTTATAATGCACCAGATCAAGCATATTGAAGGCAAACACTGGCCCTGCCCGTTATGCAGCAAGACGTTCTTCAGACAGAGAAATGTGAGAAATCACATAAGGACACACAATACCAAGCTCTACAAATGCCGCCAGTGCATTGCTGCTCAGTGAGGTCAGTCTGTAATCTACAGATGTCTCAATCTTTGGGTTTTCATTTATTTCCACAAGCGTTTTAATGTACGGCTTTCAAATTTTAGGCGAAAAGCTACAGGATAAAATGAAGAGGAACAAAGCTTTGTTCTTTAAATAACGCTGTAAATACCAAGGATCTGTGACGAATGACAATAAGGTTGAGTTTATTGATGTAAATAATTTGATGATGGTTTAAGTGGTCTTTTTGCtcaataattgttgttgttatttaagtAACTAAACTGAAGTTGCTTCGGAATTGATACAGATATGTTGAAGCTGAACTTGAACCCATGATGTTTTTTTCTCAGGGGCGAAGCCTGATAGTCAAGGTGATATATGTGTATAATGAGAAATGTTTAGAATGCTTTAAATTTgttaatactaatgtaattactacagttgttattactattgttattattattatgattattttttataaatggcaTAATCTTGAGTGCACTTAATGTTAGCTTTGTTTTGAAACCTAAGAAAGAAGCGATGGACTGGGATGTACTTGAATGATTGTTGGAGTGGAGCCGATGGACTGTCTGGCAATGTTTTAGAGAAACCTCTTACAGAAATTAGTCAGGAATTTTTCAATGAAGGTTGGGTAAATGGGGTTCGAGTTGTTCTAGAAAT

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022414 reproductive process biological_process
GO:1990918 double-strand break repair involved in meiotic recombination biological_process
GO:0043900 regulation of multi-organism process biological_process
GO:2000241 regulation of reproductive process biological_process
GO:0018193 peptidyl-amino acid modification biological_process
GO:1905879 regulation of oogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0032183 SUMO binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-6870 Predicted to enable metal ion binding activity. Is expressed in brain; forebrain; hindbrain; and telencephalon.

Ensembl:

ensembl_id ENSDARG00000095912

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074431 False 5114 lncRNA 0.44 7 30490505 30503378
TCONS_00074432 True 1275 mRNA 0.41 3 30490807 30494727

Neighbor

gene id symbol gene type direction distance location
XLOC_037910 NA coding downstream 16027 30458704 ~ 30474478 (-)
XLOC_037909 gja8a coding downstream 57727 30430188 ~ 30432778 (-)
XLOC_037908 piga coding downstream 105227 30374181 ~ 30385278 (-)
XLOC_037907 asb11 coding downstream 119258 30364667 ~ 30371247 (-)
XLOC_037906 sytl5 coding downstream 126735 30323462 ~ 30363770 (-)
XLOC_037912 NA coding upstream 14539 30517917 ~ 30525279 (-)
XLOC_037913 chaf1b coding upstream 39761 30543139 ~ 30555725 (-)
XLOC_037914 morc3a coding upstream 55130 30558508 ~ 30576522 (-)
XLOC_037915 BX571809.1 coding upstream 174092 30677470 ~ 30680018 (-)
XLOC_037916 BX571809.2 coding upstream 204461 30707839 ~ 30707954 (-)
XLOC_037905 BX571713.1 non-coding downstream 193714 30296675 ~ 30296791 (-)
XLOC_037898 BX322575.1 non-coding downstream 382545 30104920 ~ 30107960 (-)
XLOC_037896 CR749776.1 non-coding downstream 682441 29807947 ~ 29808064 (-)
XLOC_037894 NA non-coding downstream 783248 29682197 ~ 29707257 (-)
XLOC_037918 NA non-coding upstream 362275 30865653 ~ 30890495 (-)
XLOC_037919 NA non-coding upstream 373265 30876643 ~ 30878216 (-)

Expression


Co-expression Network