gfm1 (gfm1)


Basic Information

Item Value
gene id gfm1
gene name gfm1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 2686141 ~ 2699008 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581934.2
gcTTTGTCTGGTGCTACGTTTGGATTTTTGGGAGTGAACTAGCACACGTTTGTCCGCCTTGCCAATGTGAGTCACTGTTAAATTTGGCAAAGTGGATTTGTCGATCCCCCCCCAAGTTTGACTCCTCAGACATGCCGTAGTCCAGGAAGTAATGTTTCACAACGAACCGGCGTGCAGTACGGTGACTTTCACGGGTTGACTGACATCCAGTGGGGGTTGTGTAAACGGAGCTAAACCCGTCCTGTCTACCATCAAAATGCGACTTCTAAAAGCAGGACTAACCTTAGGTCAGACACATTTAAGGAAACCGGGAACACTAACATTAAAAAAGGTGTTGATGAACAGTTGTCGGTCGTGCTCCTCTGGTATCGTCCCCAATGAAAGAATCCGCAACATCGGAATCTCGGCGCACATCGACTCGGGGAAGACCACACTCACGGAGCGCGTCCTTTTCTACACGGGCAGGATAGCAGAGATCCATGAGGTAAAGGGAAAGGATGGAGTCGGGGCCACCATGGACTCGATGGagctggagaggcagagaggcatcACCATCCAGTCAGCTGCCACATACACCGTCTATAAGGATTACAACATCAACATCATCGACACCCCAGGCCATGTGGACTTCACCATCGAGGTGGAGCGAGCCCTGCGTGTTTTGGACGGGGCGATCCTGGTCCTATGTGCAGTTGGCGGGGTCCAGTGCCAGACCCTGACCGTGAACAGACAGATGAAACGCTACAATGTTCCCTTCCTCACCTTTATCAACAAGCTGGACCGCATGGGAGCCAACCCCAGCCGCGCCCTGCAGGCCATGAGGACCAAGCTGAGCCACAACGCAGCCTTTGTGAACATCCCCATCGGTCTGGAGGGGAACATGAAGGGCATCATAGATCTCATAGAGGAGCGCAGCATGTACTTCGAGGGCCCATTCGGACAGAATATTCGGTTAGATGAGATCCCGGCGGAGTTCCGTGTGGAGGctgcagacaggagacaggagctgGTGGAGTGTGTGGCTAACGCTGACGAGACCCTGGGCGAGATGttcctggaggagaggatcccCACCGTGCCAGaactcaagTCAGCCATACGCAGGGCCACAGTGCAGCGGCTCTTCAGCCCCGTGCTGGTGGGAACTGCCCTGAAGAACAAGGGTGTCCAGCCTCTATTGAACGCAGTGCTGGATTATCTGCCCAACCCCACAGAGGTCAACAACTACGCCCTCTTCAACGATGAGGAGTCCAGTGACAGTACTAAGATCCTGATGGATCCCACCAGAGACGCCTCGCAGCCCTTCGTTGGCCTGGCCTTCAAACTGGAGGCGGGTCGGTTTGGTCAGCTGACGTACGTGCGTGTGTACCAGGGCTGTCTGAAGAAGACAGAGTATATCATCAATACACGCACTGGCAAGAAGGTCCGTGTGCAGAGGCTAGTGCGTCTCCATGCTGACCAGATGGAGGATGTGGAGGAGGTGTATGCAGGGGACATCTGTGCCCTTTTTGGGATCGATTGTGCCAGCGGAGACACTTTCACCTCCCGGACCAGCGCCAACCTCTCCATGGAGTCCATCCACATTCCAGAGGCTGTCATCTCCATGTCTATGAAGCCGTCCAACAAGAATGACATGGATAAGTTCTCTAAAGGCATCAACCGCTTCACCAGAGAAGACCCCACGTTCAGGGTCCACTTTGACACAGAAAGCAAGGAGACTATCATTTCTGGCATGGGAGAACTGCACCTGGAGATCTACTCACAGaggatggagagggagtatAACTGCCCCTGTGCGATGGGAAAACCAAAGGTATCCTTCAGGGAGAGCGTGACCAGTGCGGTACCGTTTGACTTCACCCATAAGAAGCAGTCTGGTGGTTCTGGGCAGTACGGTAAAGTGATAGGAGTTCTGGAACCTCTGGACCAAGAGAACTACACAAAAGTGGAGTTTGAAGACCAGACTGTCGGAACTAACATCCCCAAACAGTTTGTGCCGGCTGTTGAGAAGGGATTCAGAGAGGCCTGTGAGAAAGGCCCTCTGACTGGTCACAAGATCTCAGGTATCAAGTTCCTATTGGAAGACGGAGCGCATCACATGGTGGACTCGAATGAGATCTCCTTCATCCGTGCAGGGGAGGGTGCTCTTAAACAAGCCATGGAGAAGGCCAACGTTGCCGTGCTGGAGCCAATCATGTCAGTAGAAATTGTGGCGCCCGATGAGTTCCAAGGGACTGTCATCGCCGGGGTCAACCGTCGCCATGGCGTCATCAGTGGGCAGGATGGGGCGGAGGGCTACTTTACTTTGTATGCTGATATTCCACTGAATGACATGTTTGGTTACGCCACAGAGCTCCGGTCCTGTACAGAGGGGAAAGGAGAATACACCATGGAGTACAGcagataccagccctgtctgCCTGGCACTCAGGAGGAGCTCATCAACAAATACCTGGAGTCAACAGGACAGCTGCCTGCCAAGAAGGGGAAGTGGAAGAACTGAGCGtggaccacccacacacacacacacaatcactgaATTGTAAACACATTGCAGTACTGCAATGGAATGCTCGACAAACACAAACCGCGCTCAACCTGCTGTTAACATACTGGGCCCTGCCTTACCAAGGTGGGTGTATTATATCGTATGTGCATTCAAAATGCTACAAATGGTCAGACAGATGACCAAGTGATTTCCTTGATTCGCCCTCGTTTTCCGTCATACTCTCGTCCTAAAGTATCCATTTTCATTTGGCCTCGGCTCTCCAGCAAACAGCCTTGTCCCCACAGCCTAGCAGTTATTATGAAGACTTGAGGCGAGCTCAAAGTTTGGACTTCAACTTGGGCATGTATATTAACTGGTTTTGTACTATGTACAGCATGTTGTTGTTATAATGAAGATTATTAAATAAGATTTATCTAA

Function

symbol description
gfm1 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translational elongation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 1. Orthologous to human GFM1 (G elongation factor mitochondrial 1).

NR:

description
elongation factor G, mitochondrial

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K02355 fusA, GFM, EFG; elongation factor G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581934.2 True 2926 mRNA 0.52 18 2686141 2699008

Neighbor

gene id symbol gene type direction distance location
LOC110503548 LOC106612480 coding downstream 28329 2643414 ~ 2657812 (-)
LOC118944084 LOC106612509 coding downstream 53975 2614267 ~ 2632166 (-)
LOC110503546 nlrx1 coding downstream 121284 2547983 ~ 2564857 (-)
LOC118943992 LOC106612428 coding downstream 143531 2534376 ~ 2542610 (-)
LOC110503545 ube4a coding downstream 156526 2500728 ~ 2529615 (-)
LOC118944109 NA coding upstream 23939 2722947 ~ 2725035 (-)
map3k10 map3k10 coding upstream 324407 3023415 ~ 3068106 (-)
LOC110503562 LOC106612510 coding upstream 478204 3177212 ~ 3179527 (-)
LOC110503563 LOC106612495 coding upstream 480579 3179587 ~ 3188674 (-)
LOC110503509 NA coding upstream 579283 3278291 ~ 3281058 (-)
G1892386 NA non-coding downstream 8010 2677917 ~ 2678131 (-)
G1892381 NA non-coding downstream 11445 2674487 ~ 2674696 (-)
G1892377 NA non-coding downstream 14761 2671145 ~ 2671380 (-)
G1892371 NA non-coding downstream 44597 2641338 ~ 2641544 (-)
G1892356 NA non-coding downstream 77845 2605677 ~ 2608296 (-)
G1892396 NA non-coding upstream 47704 2746712 ~ 2746960 (-)
G1892408 NA non-coding upstream 53128 2752136 ~ 2752352 (-)
G1892438 LOC106612485 non-coding upstream 96529 2795537 ~ 2795994 (-)
G1892456 clasrp non-coding upstream 117133 2816141 ~ 2820408 (-)
G1892464 NA non-coding upstream 181845 2880853 ~ 2881995 (-)
G1891499 NA other downstream 881079 1802008 ~ 1805430 (-)
LOC110503527 med29 other downstream 1595151 1087227 ~ 1091024 (-)
G1889857 NA other downstream 2127042 557130 ~ 559099 (-)
LOC110503513 LOC106612442 other downstream 2445798 238150 ~ 253390 (-)
G1892841 NA other upstream 237176 2936184 ~ 2937051 (-)
G1892888 NA other upstream 314447 3013455 ~ 3019441 (-)
G1893790 LOC106612372 other upstream 1211701 3881288 ~ 3914848 (-)
egln2 egln2 other upstream 1354827 4053778 ~ 4075685 (-)
si:dkey-202l22.3 LOC106612399 other upstream 1592841 4289886 ~ 4294714 (-)

Expression


Co-expression Network