LOC118944109


Basic Information

Item Value
gene id LOC118944109
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 2722947 ~ 2725035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962088.1
aatacaggtgtgccaagtttgtagtgtcatacccaagaagactctggactgtaatcactgccaaatgtgcttcaagaaagtactgagtaaatggtctgaatactttctggatgCACTGTATCTAGACATTAGATGTAGAAGCTCTGACAGTAAGTTAAGCAATAAACAGCTCAATTAATAGGCCTCCTACACagtaatgttttatttttttatgtacacAAATTAAGCAAATTTCACTTAATAATTAATGCAACTTTATTCCATCAGTGGGTCATATGTGTCATTTCAATAGCTTCCTGTCATGGAGTGGAGCCCTTGTCAATTCCCTTTTGTCTCTTATCACCCAGAATTGCACTGCATTGACAGGGTATTCCAATGGAGCACCTACAGCTGCCTCGGGCCAAGCAAGAAGAAGCTGTACCAGGCCATAGCGGCAGGAAAGACCTCTGCCGAGGGGGATCACTCAGAGGCCCAGTGCTGCTCAGAGGGAGAGCAGTTTCAGGAAAGACCTGCAGTGGATGCTGTTCAACAAATGTGGTCTGGTGGATCTATGGATGGCAGGTCACCTACCACAGCCCCCTCAGTGTTTCCATGGAGACCATAGTCCAGACAGCGATGGACAGGGGCTACACAGTACAGGGGGAGATGTTCTCAGCTGCTGACTGGGCATTCTGGGACCTCAAGCACCGCTTCACCACTGCTCCCATATTGGTTCATCCTGATCTGTCACGTCAGTTCATGGTGGAGACCGATGCTTCgggagtgggggctgtcctgtcccaggaTTTTGCCCTGGACCCCAAGTTACATCCCTGTGGCTTCTCCCATTGCCTAAATGCCAggagaggaactacgatgtggggAATTGTGAGCTTCTCGCAGTGAAGAtggtgttggaggagtggagacactggttgGAGGGGGCGGAACATCCGTTCATTGTGTGGGCGGACCACAAGAACATGCTGAGCGCTTGTTGGCTgtgtttccttcactctgaggtcaggtgattgtagagactaggtcatctgatgcagcactccatcactttccttcttggtcaaataggcctTACACAGGCTgcaggtgt
>XM_036962087.1
aaatacaggtgtgccaagtttgtagtgtcatacccaagaagactctggactgtaatcactgccaaatgtgcttcaagaaagtactgagtaaatggtctgaatactttctggatgCACTGTATCTAGACATTAGATGTAGAAGCTCTGACAGTAAGTTAAGCAATAAACAGCTCAATTAATAGGCCTCCTACACagtaatgttttatttttttatgtacacAAATTAAGCAAATTTCACTTAATAATTAATGCAACTTTATTCCATCAGTGGGTCATATGTGTCATTTCAATAGCTTCCTGTCATGGAGTGGAGCCCTTGTCAATTCCCTTTTGTCTCTTATCACCCAGAATTGCACTGCATTGACAGGGTATTCCAATGGAGCACCTACAGCTGCCTCGGGCCAAGCAAGAAGAAGCTGTACCAGGCCATAGCGGCAGGAAAGACCTCTGCCGAGGGGGATCACTCAGAGGCCCAGTGCTGCTCAGAGGGAGAGCAGTTTCAGGAAAGACCTGCAGTGGATGCTGTTCAACAAATGTGGTCTGGTGGATCTATGGATGGCAGGTCACCTACCACAGCCCCCTCAGTGTTTCCATGGAGACCATAGTCCAGACAGCGATGGACAGGGGCTACACAGTACAGGGGGAGATGTTCTCAGGTAATGCTTTAGCCATCTGTGCTGCATACACTGAACAACAGCAGCGCTGTACTGTATTAGTGAGGCTAGTGTGTGTGCTTTatccggggttacagcaccctggcttcccaCCCTGTCTGCACTCAACTCTCCCAACTTGGTCCCCAGCTGCTGACTGGGCATTCTGGGACCTCAAGCACCGCTTCACCACTGCTCCCATATTGGTTCATCCTGATCTGTCACGTCAGTTCATGGTGGAGACCGATGCTTCgggagtgggggctgtcctgtcccaggaTTTTGCCCTGGACCCCAAGTTACATCCCTGTGGCTTCTCCCATTGCCTAAATGCCAggagaggaactacgatgtggggAATTGTGAGCTTCTCGCAGTGAAGAtggtgttggaggagtggagacactggttgGAGGGGGCGGAACATCCGTTCATTGTGTGGGCGGACCACAAGAACATGCTGAGCGCTTGTTGGCTgtgtttccttcactctgaggtcaggtgattgtagagactaggtcatctgatgcagcactccatcactttccttcttggtcaaataggcctTACACAGGCTgcaggtgt

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962088.1 False 1090 mRNA 0.49 4 2722947 2725034
XM_036962087.1 True 1238 mRNA 0.49 3 2722947 2725035

Neighbor

gene id symbol gene type direction distance location
gfm1 gfm1 coding downstream 23939 2686141 ~ 2699008 (-)
LOC110503548 LOC106612480 coding downstream 65135 2643414 ~ 2657812 (-)
LOC118944084 LOC106612509 coding downstream 90781 2614267 ~ 2632166 (-)
LOC110503546 nlrx1 coding downstream 158090 2547983 ~ 2564857 (-)
LOC118943992 LOC106612428 coding downstream 180337 2534376 ~ 2542610 (-)
map3k10 map3k10 coding upstream 298380 3023415 ~ 3068106 (-)
LOC110503562 LOC106612510 coding upstream 452177 3177212 ~ 3179527 (-)
LOC110503563 LOC106612495 coding upstream 454552 3179587 ~ 3188674 (-)
LOC110503509 NA coding upstream 553256 3278291 ~ 3281058 (-)
trnastop-uca NA coding upstream 556398 3281433 ~ 3281519 (-)
G1892386 NA non-coding downstream 44816 2677917 ~ 2678131 (-)
G1892381 NA non-coding downstream 48251 2674487 ~ 2674696 (-)
G1892377 NA non-coding downstream 51567 2671145 ~ 2671380 (-)
G1892371 NA non-coding downstream 81403 2641338 ~ 2641544 (-)
G1892356 NA non-coding downstream 114651 2605677 ~ 2608296 (-)
G1892396 NA non-coding upstream 21677 2746712 ~ 2746960 (-)
G1892408 NA non-coding upstream 27101 2752136 ~ 2752352 (-)
G1892438 LOC106612485 non-coding upstream 70502 2795537 ~ 2795994 (-)
G1892456 clasrp non-coding upstream 91106 2816141 ~ 2820408 (-)
G1892464 NA non-coding upstream 155818 2880853 ~ 2881995 (-)
G1891499 NA other downstream 917885 1802008 ~ 1805430 (-)
LOC110503527 med29 other downstream 1631957 1087227 ~ 1091024 (-)
G1889857 NA other downstream 2163848 557130 ~ 559099 (-)
LOC110503513 LOC106612442 other downstream 2482604 238150 ~ 253390 (-)
G1892841 NA other upstream 211149 2936184 ~ 2937051 (-)
G1892888 NA other upstream 288420 3013455 ~ 3019441 (-)
G1893790 LOC106612372 other upstream 1185674 3881288 ~ 3914848 (-)
egln2 egln2 other upstream 1328800 4053778 ~ 4075685 (-)
si:dkey-202l22.3 LOC106612399 other upstream 1566814 4289886 ~ 4294714 (-)

Expression


Co-expression Network