LOC110503562 (LOC106612510)


Basic Information

Item Value
gene id LOC110503562
gene name LOC106612510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 3177212 ~ 3179527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581955.2
GATTTATGGGTCATGGGGGAACAAACTATTGAGTGCCTACACTACCAAACCACGTTAGAAGCGCTTTTGCAATTTGGTTAGTAAATTAGATTTAAATACGCTTGTTTGAACAACACAATCCTGCTTTCTCTCTGGATGAATGCTTTCTCTGTTGTGTACCCAATCAGGTATGTCTGTTTTTGTAACCCCTATGCTCTCAGGTTACCTGAGTTCAACATTGCCAGGGCGGAGACAGGGTATGAAtaaggagatatatatatatatatatacacacgttcATACAGACTTATTCACCCGACTGCAGCTAACATTCTCTACAGGCTCTCAAGCTATCGATAAAACATTTCCCTTCAGAGAGTTGTGAAAGGTCACAGAGGTAGGCCAACTAACCTTTTGACCTCTCGTCGTGCGTGGGCTCCATCTCCGTGGCAATGGTCTTCTCAGCAGAACAAGTGGCGTGTGTGTGCGAGGTCCTTCTGCAGAGCGGACGCATGGAGAGCTTGACTGGCTTCCTCCGCactcttcccccctcttcctcctcttgccTGGGGGGTCTGGAGAGCGTCCTGAAGGCACGGGCTGCCGTGGCCTTCCATCTGGGGCGCTTCTCGGACCTCTACGCCCTCCTGGAGGGCTTCCCCTTCTCCAATCGCAGCCACCCCCTGCTGCAGCAGCTCTGGCTGAGGGCACACTACCTGGAGGCCGAGTGCCAGAGAGGGCGCCCCCTTGGGGCTGTGGGGAAGTACCGCGTACGCCGTAAGTTTCCCCTGCCAAGAACCATCTGGGATGGAGAGGAGACTAGCTACTGCTTCAAGGAGAAATCCCGGAGTGTGCTGCGCGAGTGGTATTACCATAAACCGTACCCTTCACCACGTGAGAAACGAGCGCTTGCAGCCGCCACCGGTCTCACCACCACCCAGGTGAGCAACTGGTTCAAGAACAGACGGCAACGGGACCGAGCAGCTCACAGTACTACCGGggaaCAGGAAGCTTGTGGACCACTTATTGGCTCCAACAGAAACCCAGGAGCAGTATACCCGTCCTCTGACAATGACCTTTCATCTCCAGGCACCCCCAGTCCCCCCTTCTCCTGCCCCCAACCCCCACCTCCTGAGCCATATGGGTGGGGGACAACTCTGAACCTCTCCACTACCTGAGCCATTATGTATAGTATGTTCACTTCAGAGGCAATACTATTCAGTTGTCTAGCCAGAAATGTGAGAGAATGATCTTTTTTAGTAACTTAGTGACACCCTGTATCCAAAATGGTTAAGCGTTTTAAATCTGAAAAAATAAAAGGCAGTTTAATAGAAAAGTTGTCACCTAATCATTGACACAAGTATATGTAAATCATGTTTAAAACGCAGCACTCTGGCAAGATGTGCTGAATGATACCACTCCCATAGCTAAAACCAAGACATGCCTGACACCTCTTGGGGAGAAGTAATGCATACGGAAGATATCCAGTGACAGTACAACCAAAGGCATTGACAACCATTTTAATGTCGCCCATTGTTACGTTTCTTCATGTTTTCAGTCACTGCCATGCTCTGTGAATATAACCTTCAATGTCATCTGTGAGCTTACTGCACGAAACCAAGTCTCAAATCTGACATTCACAGAAATCAATTGTTGGCAAAATCACAACTGATGATCATGAT

Function

NR:

description
homeobox protein SIX2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581955.2 True 1661 mRNA 0.49 3 3177212 3179527

Neighbor

gene id symbol gene type direction distance location
map3k10 map3k10 coding downstream 109106 3023415 ~ 3068106 (-)
LOC118944109 NA coding downstream 452177 2722947 ~ 2725035 (-)
gfm1 gfm1 coding downstream 478204 2686141 ~ 2699008 (-)
LOC110503548 LOC106612480 coding downstream 519400 2643414 ~ 2657812 (-)
LOC118944084 LOC106612509 coding downstream 545046 2614267 ~ 2632166 (-)
LOC110503563 LOC106612495 coding upstream 60 3179587 ~ 3188674 (-)
LOC110503509 NA coding upstream 98764 3278291 ~ 3281058 (-)
trnastop-uca NA coding upstream 101906 3281433 ~ 3281519 (-)
trnastop-uca-2 NA coding upstream 102549 3282076 ~ 3282162 (-)
trnastop-uca-3 NA coding upstream 112703 3234183 ~ 3292316 (-)
G1892970 NA non-coding downstream 3250 3170898 ~ 3173962 (-)
G1892859 fosb non-coding downstream 218909 2954028 ~ 2958303 (-)
G1892845 NA non-coding downstream 237224 2939788 ~ 2939988 (-)
G1892843 NA non-coding downstream 238322 2938558 ~ 2938890 (-)
G1892842 NA non-coding downstream 239501 2937465 ~ 2937711 (-)
G1892973 NA non-coding upstream 3586 3183113 ~ 3183373 (-)
G1892980 NA non-coding upstream 16802 3196329 ~ 3196557 (-)
G1892984 NA non-coding upstream 19543 3199070 ~ 3199304 (-)
G1892988 NA non-coding upstream 27218 3206745 ~ 3248318 (-)
G1892888 NA other downstream 157771 3013455 ~ 3019441 (-)
G1892841 NA other downstream 240161 2936184 ~ 2937051 (-)
G1891499 NA other downstream 1372150 1802008 ~ 1805430 (-)
LOC110503527 med29 other downstream 2086222 1087227 ~ 1091024 (-)
G1889857 NA other downstream 2618113 557130 ~ 559099 (-)
G1893790 LOC106612372 other upstream 731182 3881288 ~ 3914848 (-)
egln2 egln2 other upstream 874308 4053778 ~ 4075685 (-)
si:dkey-202l22.3 LOC106612399 other upstream 1112322 4289886 ~ 4294714 (-)
G1894611 NA other upstream 1174051 4353578 ~ 4353936 (-)
G1896030 NA other upstream 2689369 5868896 ~ 5869218 (-)

Expression


Co-expression Network