LOC110503563 (LOC106612495)


Basic Information

Item Value
gene id LOC110503563
gene name LOC106612495
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 3179587 ~ 3188674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581956.2
CATCGCTATAATTAATCTTAAAATCGGAGATTGACGAGGTTAGAGGCGTGCGTGACGCGTGTAGCTGTGGCAGACACTCGTCGACGGAGAATgggcgagagagagcgcgcaGGGGAGGAACTAAAATTAAAAAAAGTTTAACTAAAAATGGCTTCCTTGTCTTTGGAGTCTGCAGAACAATCTGAGAATAGCACGGAGAATCCTACCCAAGAGGCCGCTCCCGTGAAAGAGGAGACGGATCCGGATGAAGTTTCGGAACAATTGCTAAAAACTTTTCAGAACTCGGCGCTTAGCTTTTCGACCGATCAAGTAGCATGTCTGTGCGAAGCCCTTCTACAGGCAGGCAATGTGGATCGCCTGTGGAGATTCCTATCAACCATCCCTCCTTCGGCCGAGCTGCTACGTGGCAACGAGACGTTGCTCAAGGCCCAGGCACTGGTCTCTTTCCACCGGGAAGAATTCAAGGAGCTGTACGCAATATTGGAAAGCCACGACTTCCACCCGAGCAACCATGGGTTCCTGCAGGACCTCTACTTGCAGGCGCGCTACAAGGAGGCGGAGAGGTCCCGAGGTCGTAGCCTGGGCGCCGTGGACAAGTATCGGCTTCGGAAGAAGTTTCCCCTGCCGAAAACAATCTGGGATGGAGAGGAAACGGTATATTGTTTCAAGGAGAAGTCTCGCAATGCACTGAAAGAGTGTTACAAAAGCAACAGGTACCCCACTCCAGACGAGAAGAAAAACTTGGCCAATGTGACTGGACTCTCCCTCACGCAAGTCAGCAATTGGTTCAAGAATCGACGGCAGAGAGACCGAACCCCGTCTGGTACCAACAGCAAAAGTGAGTCCGATGGCAACCACAGCACAGACGATGAGGGTGACGACATTTCAGACAAACTAGAGGACATTGTGGGCTCCACAGCCTCCATCATCTCCCTCTCTGGTACCCCCTGCAGCACTGGGGGCCAGATCTTCCTCAACGGGGCTGGTGGGTTCCTCGCCGCCTCCCACCCCTTACTCCTCAATAGGGGCTCCCTGATCTCCGGGGCAGGGGGTGGCGTCATCATCAACGGGCTGACCCTGAGCGATGGTCACACGGTTACCCTCAGCCCCATATCGGCTAACTCGCCTCTTCTCTTCAATGGAGCGCAGGTCATATCCAAAAGCAGTGCGGTTGTGCAGGATATGGGTCTGGAGGGCCAGGGGGTTACAGCCATGGAGGCCCAGCCCAGCTCGGTCATCTCCGTCCCCCTGACAGAGGACTGTAAGATGGACAATGTTAGCCTGACGAACCCCTCGACTATCCCCACCCTGGACTTCATCAATGTCCCAGAGGGGATGGTTCTCAAAGCCGAGGACATCCAGacagtctctccttccccctcttcctccttgtCTTCCCCCTCAACattctcccccacctccctcccctccctggtTCTGACTCAAAATGGCCACCTCTCCGACACCCTCCCGGTCTCTAAGTCATCCCCGGGTGTGGTCTCCAGCCCTGTAGTGAGCCTCCCCAACCAGCAGGGGGAGTATGTTGTGTTTGCCACAGCTGGTTCTCAGCTCACCCCCTCCAGCTCCATCTGCCAGGTGGTGTCATCCTACAGCTACTCCAGCCCACAAGTATTCTCCCTGCCTCAGGTGGTGCCCTCCATCCAGGGTGTCCCTGTATCCCAACTGGTCCAACACAACCCTGGAGGCCAGTGTCCCCAGTTAGTCCCtgtcccccccacctccctcccccagGGCACCCTCTCCCAGTTCCAGGGCCACCAGACTCTGAACATTGCCCCCCACCTCGCCCAATCCCTCCCCCAGCATCATACTGGTTCCTCTACATTGGGAGCGGGATCCACCATCCTCTCCCTGTCCCAGCTCACCAATGGACAGCTCCCCCAGGGACTCACACTCCAGTTGGGTGACCAGACCTCAGCTACGATCCCCACTCTGACACAGATCCAGTCCCCACTAGGCCATCCCCAGATCATCTCCTCCCCTACCCAAGTGGTTCCTGTCTCCCAGTCCAAAGAGACAACCCCAGCTCAGTTGGTTTCCCTGCCCCAGCTGGTGCCTGTCTCCTCCGCGGGACAACTCTCCTTCCCTCAGGTCGGCCCAGCCACCCCTTCTCTATCTGGAGGTGCTTTCCAGATCCTAGCCTCGGCCACTGGTGGTGGGATGCCTCAGGGGCCCTTTAGGATAAACCAACTGGGACCCCTCCAGACTGTAGGCCCCCCGACCAGCATGGCTCCTAGTGTCCAGCTCCTCAACTCTGGGGTCATTCAGCTCCCCTCCGCCTCGCCAGgGAATCTCCTCTATGGTGGAAGCCCCATCCTGAGTTACCAGAACggcaagctgatcctaactaTTCCGGCTGGCATCCAGTTTGGCAGCCTGCCCATGAAACCCGTCCCTGAGGCTTCTACCCACCCCACCAACGGAGTAGGCCCCGGACTCACACTCAACCCTGTCATCCACCCTACACCTACCCTCATCCCAGTCTCCACCTCTGTCTCAACCTCCAACACCCTCCAGACGTCCCCCCTCTGCTTCATCAACTCCTCTCCGCTCTACTGCACTCATGAGACGGGTGTCCCCACCAACCAGCCCCACTCCACCACCTCCCCACACACCCTGGACCTCTCTGCCACTCACACTCCTCCCAATGCCCTCACCCCAGAGAGCATGCTCTCCCTCAGCCCCATGTGCAGTGGAGTGACCCCCACCACTCAGCTCTCCCACACCACCTGGagccctgtccccctctccacctctgccAGCCTGACTATGTTTGACGTCCGTGGGAAGGGGGATCTTCCCGAGGATCCGGCTCTGCTGGGCCTACCTGGAGGCGAGGCACTGCTACTGGGGAGCCCCTCTCCGGAACAGGATGTGGACAGGGTGTCGCCATTGGGGGACCCAGAGGAAATGGATGGAGAGCCCAAGATCCTCACCCAGCTACAATCAGTCCCTGTGGATGATGAGTTGGGGCTGTAATCCAGTCCCAGTCCCCCCCAACCCACATCACCATAAACTCAGTCAGCAAGACTATATGTTACAGAACAACCTCAGTGCTCCCTTGGATAGGTTTCATTGAAGAGTGGACTGGCTTTGACTCGTATGAGAAATGTGCTTTGACTCAAAAAAATCCTAGGCGATGATCCTTTTGGATAAACCGTCACGGGATAGGCTGATTGTATGCAACATGGAATTACCTGGAGGATGGCCTTGCATATAGGCTAGCCTGTTACACAACTGTCCACTGCTTGGTTTCCACAGTTTTAGAACTCTTATACTGTTGTCGTCTGCCTCCCATAAGCCAAGAGCCCTTCCTGTGTCACAAAATCCAGTCCGAGACAAAATGGAGGAGCTGGCACGGTTCCTTTTACTCGGCATCAAGTTAATTTCTAAGGACATTCTGCGGCTTTTATGCACAGACGTGCCCGTTTCAGCCAATACTATTTGTACTACAAGGGAATGAATGCCTTGGGTTTTAGTTGGCGTTGGGTTGAGCGGTACGCCACGGCCAGGTTGTCTTGTTTAAGTCTCTAAACTCCGCCAAATGCAGACGCAGCCAAGCATTAAGTCCTGTTGAAGTTGGACTGTGTGGTTCTGAATGGCTGTTCACTTTGGTGCTGCTGAGTATTGCACAGTTTAGCCTCAGTGAACGCAAACAGAAAGTGGGCTGACCGTGACACCAGAAACCCCCGAACACTCTAGCATCGAGCTGGACTGTGTACTCCTCTCTGTCAGCAGTGTCACCGCGCCAAAGGGCACAGGCTCCTCATTTAACTACAGGTTGGCATGCATGCTAAGCTCTGTCACATCTGAGGTCTGTAGGAGGGAATGGAGTCACCTGGGAATTTTTTTGAAAacaaactttttttattttattttttactctaTGCAATCAATGCATGGTCCTCTGTAAATATGACCATGTGACATGTATTACATATGTAAGCCAGTCTAATTAGGATAGACCAAGCTTTAGTGAAGACAGGTTTCATACACTGTCTAACGCGCGTGTACACTACACACTCTGCTTGACCACATGGTGCGATATTTGCGCCACAATCGTACACTACTACAAATTGTccgattttatttttattttatcttaCTTTTATGGGTTTGAGCTCGACCTAATATAAGTGCCTTGTTATCTAGTTGCTGAGGTTGATGGGCCAGTGTGGGTTTTACTGCCTTTGGATCTTCAAAGTGAAGAATGTGTTCTACTCTTCACAAAATGAAGCACCATTGAGACAAGCAACTTCCCACGTTGATGTCGAATTTGAGTTTTGTAATAACCTGTATCCCTCGCGAACTCCAGAGAAACGTAACGTGGCGCCCTTGGTTTGTACGGCCGTTGCTCTTTTAGCATCACTAACGCCTACCATGACATAATCACCATTGAGAACTCCCTGCTCATTGTACGTTTTGCACATTTCGTCCGTGTCATGTTTACGCCTAAGGTGATGGCCAGATTCTATTCTGTAAAACCTGCTGCCTTATTCTCTGTTCTTGACGAATTGCACTCACTGATCTGAAGGGACGGGATAGGTCGAATTAGCTGGTTAGGTTGAGTTTCAAACAGCCTCTGTCTATCCTGATATCAGCAACAGTGAGTCACGAAGCGCTGAGAGCAGGTGACAGGTCTCCTAGAATGGAATGGTATCCAGCGAGACTCGGTGCAGTTGTTCTCGCCATAAACGTACAGTACTCGCCATCTCTCCATAACCAAAACACAGATGGCAGTTCTCTGGCCAACAGTAAAACCACGCTATTCTTCAGTGTCACTCCCAACTGTTGTGTTTtttatatttgtgtgtttttgtttattttctgtgtgtatTTAAAGCATGTATTTAAAGCATGTATCAATCATTTTCTAGTAGTAACTTTGAATACTTTGAATGGGAGAGGAACAAAACGAGCAGTCCTTGTAGAAGTAGAACACATGGACAAAGGAAAAAGCATCAATGGACCTTCCCAGGGGATGGCTGGTTGGACAGTCTCAATGTGTAGCTAATGATAATCACCACTTCTCAAATGATATTATACACTTCTACAATCTGAATAGGATGTTAATACCCATCAAAGGTATGTTACATGTTgagtttttaaattgtttttaatcGATGTTTGGAAATGTTTTGTTGGTTCTAAGGCATTTTCTTTCCATACGATACAGTGCATGAGTTTGAGCCTAAAGGGAAtgtgtgttcatgtttgtttttgtttgtgtagCCCACCACTTGTCTACAtgtagtgtttttttgttgttgtttttttagtgTGTGGTGCTCCAATGGCTGTTCGTGTCAGGTGCAGGAatttgtaacacacacacaacctccagcTGAGTTATCCAAAGATGTACTTTTTAAGTGAGTAAAGGGAttattagatttaaaaaaaaaacatttgaggttGGTTTTATACTGAaaggtattttattttttatatgcaGTTTTGTGATATTCTAATAAACTATATAAAgaaaa
>TU2165472
TAACTTTGAATACTTTGAATGGGAGAGGAACAAAACGAGCAGTCCTTGTAGAAGTAGAACACATGGACAAAGGAAAAAGCATCAATGGACCTTCCCAGGGGATGGCTGGTTGGACAGTCTCAATGTGTAGCTAATGATAATCACCACTTCTCAAATGATATTATACACTTCTACAATCTGAATAGGATGTTAATACCCATCAAAGGTATGTTACATGTTgagtttttaaattgtttttaatcGATGTTTGGAAATGTTTTGTTGGTTCTAAGGCATTTTCTTTCCATACGATACAGTGCATGAGTTTGAGCCTAAAGGGAAtgtgtgttcatgtttgtttttgtttgtgtagCCCACCACTTGTCTACAtgtagtgtttttttgttgttgtttttttagtgTGTGGTGCTCCAATGGCTGTTCGTGTCAGGTGCAGGAatttgtaacacacacacaacctccagcTGAGTTATCCAAAGATGTACTTTTTAAGTGAGTAAAGGGAttattagatttaaaaaaaaaacatttgaggttGGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581956.2 False 5510 mRNA 0.51 3 3179587 3188674
TU2165472 True 541 lncRNA 0.37 1 3179655 3180195

Neighbor

gene id symbol gene type direction distance location
LOC110503562 LOC106612510 coding downstream 60 3177212 ~ 3179527 (-)
map3k10 map3k10 coding downstream 111481 3023415 ~ 3068106 (-)
LOC118944109 NA coding downstream 454552 2722947 ~ 2725035 (-)
gfm1 gfm1 coding downstream 480579 2686141 ~ 2699008 (-)
LOC110503548 LOC106612480 coding downstream 521775 2643414 ~ 2657812 (-)
LOC110503509 NA coding upstream 89617 3278291 ~ 3281058 (-)
trnastop-uca NA coding upstream 92759 3281433 ~ 3281519 (-)
trnastop-uca-2 NA coding upstream 93402 3282076 ~ 3282162 (-)
trnastop-uca-3 NA coding upstream 103556 3234183 ~ 3292316 (-)
LOC110503508 LOC106612386 coding upstream 107020 3295694 ~ 3300801 (-)
G1892970 NA non-coding downstream 5625 3170898 ~ 3173962 (-)
G1892859 fosb non-coding downstream 221284 2954028 ~ 2958303 (-)
G1892845 NA non-coding downstream 239599 2939788 ~ 2939988 (-)
G1892843 NA non-coding downstream 240697 2938558 ~ 2938890 (-)
G1892842 NA non-coding downstream 241876 2937465 ~ 2937711 (-)
G1892980 NA non-coding upstream 7655 3196329 ~ 3196557 (-)
G1892984 NA non-coding upstream 10396 3199070 ~ 3199304 (-)
G1892988 NA non-coding upstream 18071 3206745 ~ 3248318 (-)
G1892985 NA non-coding upstream 38842 3227516 ~ 3235034 (-)
G1892888 NA other downstream 160146 3013455 ~ 3019441 (-)
G1892841 NA other downstream 242536 2936184 ~ 2937051 (-)
G1891499 NA other downstream 1374525 1802008 ~ 1805430 (-)
LOC110503527 med29 other downstream 2088597 1087227 ~ 1091024 (-)
G1889857 NA other downstream 2620488 557130 ~ 559099 (-)
G1893790 LOC106612372 other upstream 722035 3881288 ~ 3914848 (-)
egln2 egln2 other upstream 865161 4053778 ~ 4075685 (-)
si:dkey-202l22.3 LOC106612399 other upstream 1103175 4289886 ~ 4294714 (-)
G1894611 NA other upstream 1164904 4353578 ~ 4353936 (-)
G1896030 NA other upstream 2680222 5868896 ~ 5869218 (-)
G1892973 NA non-coding upstream 2918 3183113 ~ 3183373 (-)

Expression


Co-expression Network