LOC110503508 (LOC106612386)


Basic Information

Item Value
gene id LOC110503508
gene name LOC106612386
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 3295694 ~ 3300801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581850.2
attgttgttcagcaTAGTATCATCTTTGCTCAGGTTTAAATTATTTTCACTCGGCATCATCTTTTCCTGAAGTGTGGTCAGTAAAAGGGTTAAATGGGTGGGCTTTCCTCTTGACCCCCACAAGGGAATGGGACAGCGGATaaatgaggaggatgatgagagCGAATCACCTCACATGACAGCGATTATAACCTGGGAGTTTGGTGGgcgtgggagagaaagagaacgagagagagagagagagagagagagagagagagagagggagaataacaGAGCACAGAACACGTGAAGAAATGTCTTAATTCGGCGCGCAAATGTGCATGTATTATCTCACCGCCATTTACCGGGTGATTATTTGACGCTTGTGATCTAccgttcatcaaagGTGAGATGGCGAGCAGGTTGGGGCTCCCCCATGACAGTTCCCTACACAGATGCATGCTGGTCCTGACCTTCCTGCTCCTACTGTGCGAGATCGTTGTCAGCCGCCTCTGTAACTCCCTCATCACCATGGTGGATGTCTTCCACACCCTTTTCATCCTCATGCACATGGCTCTTCCTCAACCCACCCTGGGCAGAGGTTCCCCAAAACCCccacctgcctcccctctctccacccccaacacctccactCAGTCACCTGTCAAAACTCCCCCATATTCCCCAGCCACCTCCGGTGTGTTCCCCAGACCCCTCACCCCTGTGGCCTCCCTGTGTGGCCTGTCCTACAGTGGGGCGAGGGTCCAGCCCCTGGGGGCTCTGATCTCAGCTCTTCTGCTGGCTGccttgtgtgtctctgtctctctagagATCCTCAGCCACACCCTGCAGCCCCACCCTATACAGCGCCCTCTTTTGGCCACGGTGATGGGGGCTGTCAGCCTGCTCTACAACCTCCTGGTGCTGGCGCTCAGCTGGGGCAGCTGGCTTGGGACCAAGACTAGAGCTGcctgggagggggaggagagctcTGTCCTTGGTGTGAATGGAAAAGTCAAGGTCCAGACCAAAGACAGCAATGCAGTGGGGGGAGAGAATTACATCAGTAACTCCCCTACATCTCTAGATGGTGCCTTCCAAGATGGAACACTTGTACTCTGTAACCCTGGGACCTCCAGTGTCCTGAACCCTGACAGTGATACTCCGCACCCATCCCAGACATCCCCACTCCATACCGTGGCCCCTCAGGGTCCCCTTTCAGACCACTGCCACGGAGCACACACACTCCCTGCAGACTGCAGAACTTCAGAGACACCAAGCAGCTTCCCACATCCAGTGGCCAGTGTCTGTCATCCAAAGGACCTCCACTCTGAAGTGTCTAAGTACAGGGCCTGCAAGGGACACAGAGaaAATCAGACAGACCCCACCACAGCCTCAGCCCTAAAGTCAGAAAGCCCTACAAGCCTCAGGGTCCAACTTCCCTCCTGTCTCCCATCCCTCATCGCCCTCACTCAGGCACTGCTAGGCTCCATCCTGGCACTCACCAACGGACTTACCTTGCTACTACTGGGCCCAGACTGCATGCATGGCTCTGGGGCCTGTGGCCCCTTCGTCTACCTGGACCCTGGCTTCTCCATGGTGGCTGTGGGGGTGCTGCTGGCCACCACTCTGCCCCAGGTGTGCCGCTACGGTTGGCTGCTGCTCCAGGCCGTCCCgccccaggtgtgtgtgtctgatctgGGCCGGCGGATCGCCAGTGTGCCAGGGGTGCAGGCGGTGCACGACCTCCACGTGTGGCAGCTGACAGAGAGCTGCCTGGTGGCGTCTGTACATGTCCACTGCCACGCTGGGTTCCAGATTCACAGGTGTGGTGATTTGTTGTCGGGGGTCACCAAGGTGCTGCAGAGTGTAGGTGTGAGCTGCTGCACCGTACAACCAGagttcctcctctctactcccacAGCCAACGGCAACCTGGATAACAACGGCACCAACCCCGCCATCATCCATAGGGAGATGCCCTCACACCTCGCCTGCAGCCTGGCCTGTGGGAAGGGGTGTGCTGGGAAGATGTGCTGTGCTCCTCTGGAGGAAGGGCCTGCAGAGCCACTGGCACCCCCTGCTGGGGAAACTGAGCAGGAGCCTCACGTGCTGATCATCGAGAACACCTTTCTTTGAGGGAAGGACCTCTAGGATGTATCTCAGTAATGTAGAGTGTGCTCCTTGCATCCTTTCCTTCATATGAAACTGATGTGAGAGGCCTGAAGTGGAGCAAACCACTTTTGGCAATTAAGATTCAGCTTGGGGATTGAATAGAATACATTATTATTGTCAGAATATTCTTAAAGACTTCTGTCCCCATGTCATTGAGGTACTTTTAGAGCGCTAGATAGCCTAATGTAAGAATTAGGCTCAGGTAAAGAGTAGAAATCCCAGTAGTCATCATGCGTGTGTGTATTTTGGGATGGGGTGGGATAATAAACAGCATTCCTATGGGTATTCAGAAAGggcctgtatgtgtactgtatctactgtatgtatgtactacATTATTATGTTGGGATTGTATTTAATTGTATTAACACGGTGCCATACCAAAGATACAGTAGATTGTAAGCCAAGTCACTCACCTAATTAAGTGTTTATTCAATAATGCCATttcaacatacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcctacaattgtccattaaaataacatcaatttgatcagaaatgcagttgacattgttaatg
>XM_036961987.1
atattgttgttcagcaTAGTATCATCTTTGCTCAGGTTTAAATTATTTTCACTCGGCATCATCTTTTCCTGAAGTGTGGTCAGTAAAAGGGTTAAATGGGTGGGCTTTCCTCTTGACCCCCACAAGGGAATGGGACAGCGGATaaatgaggaggatgatgagagCGAATCACCTCACATGACAGCGATTATAACCTGGGAGTTTGGTGGgcgtgggagagaaagagaacgagagagagagagagagagagagagagagagagagagggagaataacaGAGCACAGAACACGTGAAGAAATGTCTTAATTCGGCGCGCAAATGTGCATGTATTATCTCACCGCCATTTACCGGGTGATTATTTGACGCTTGTGATCTAccgttcatcaaagGTGAGATGGCGAGCAGGTTGGGGCTCCCCCATGACAGTTCCCTACACAGATGCATGCTGGTCCTGACCTTCCTGCTCCTACTGTGCGAGATCGTTGTCAGCCGCCTCTGTAACTCCCTCATCACCATGGTGGATGTCTTCCACACCCTTTTCATCCTCATGCACATGGCTCTTCCTCAACCCACCCTGGGCAGAGGTTCCCCAAAACCCccacctgcctcccctctctccacccccaacacctccactCAGTCACCTGTCAAAACTCCCCCATATTCCCCAGCCACCTCCGGTGTGTTCCCCAGACCCCTCACCCCTGTGGCCTCCCTGTGTGGCCTGTCCTACAGTGGGGCGAGGGTCCAGCCCCTGGGGGCTCTGATCTCAGCTCTTCTGCTGGCTGccttgtgtgtctctgtctctctagagATCCTCAGCCACACCCTGCAGCCCCACCCTATACAGCGCCCTCTTTTGGCCACGGTGATGGGGGCTGTCAGCCTGCTCTACAACCTCCTGGTGCTGGCGCTCAGCTGGGGCAGCTGGCTTGGGACCAAGACTAGAGCTGcctgggagggggaggagagctcTGTCCTTGTCAAGGTCCAGACCAAAGACAGCAATGCAGTGGGGGGAGAGAATTACATCAGTAACTCCCCTACATCTCTAGATGGTGCCTTCCAAGATGGAACACTTGTACTCTGTAACCCTGGGACCTCCAGTGTCCTGAACCCTGACAGTGATACTCCGCACCCATCCCAGACATCCCCACTCCATACCGTGGCCCCTCAGGGTCCCCTTTCAGACCACTGCCACGGAGCACACACACTCCCTGCAGACTGCAGAACTTCAGAGACACCAAGCAGCTTCCCACATCCAGTGGCCAGTGTCTGTCATCCAAAGGACCTCCACTCTGAAGTGTCTAAGTACAGGGCCTGCAAGGGACACAGAGaaAATCAGACAGACCCCACCACAGCCTCAGCCCTAAAGTCAGAAAGCCCTACAAGCCTCAGGGTCCAACTTCCCTCCTGTCTCCCATCCCTCATCGCCCTCACTCAGGCACTGCTAGGCTCCATCCTGGCACTCACCAACGGACTTACCTTGCTACTACTGGGCCCAGACTGCATGCATGGCTCTGGGGCCTGTGGCCCCTTCGTCTACCTGGACCCTGGCTTCTCCATGGTGGCTGTGGGGGTGCTGCTGGCCACCACTCTGCCCCAGGTGTGCCGCTACGGTTGGCTGCTGCTCCAGGCCGTCCCgccccaggtgtgtgtgtctgatctgGGCCGGCGGATCGCCAGTGTGCCAGGGGTGCAGGCGGTGCACGACCTCCACGTGTGGCAGCTGACAGAGAGCTGCCTGGTGGCGTCTGTACATGTCCACTGCCACGCTGGGTTCCAGATTCACAGGTGTGGTGATTTGTTGTCGGGGGTCACCAAGGTGCTGCAGAGTGTAGGTGTGAGCTGCTGCACCGTACAACCAGagttcctcctctctactcccacAGCCAACGGCAACCTGGATAACAACGGCACCAACCCCGCCATCATCCATAGGGAGATGCCCTCACACCTCGCCTGCAGCCTGGCCTGTGGGAAGGGGTGTGCTGGGAAGATGTGCTGTGCTCCTCTGGAGGAAGGGCCTGCAGAGCCACTGGCACCCCCTGCTGGGGAAACTGAGCAGGAGCCTCACGTGCTGATCATCGAGAACACCTTTCTTTGAGGGAAGGACCTCTAGGATGTATCTCAGTAATGTAGAGTGTGCTCCTTGCATCCTTTCCTTCATATGAAACTGATGTGAGAGGCCTGAAGTGGAGCAAACCACTTTTGGCAATTAAGATTCAGCTTGGGGATTGAATAGAATACATTATTATTGTCAGAATATTCTTAAAGACTTCTGTCCCCATGTCATTGAGGTACTTTTAGAGCGCTAGATAGCCTAATGTAAGAATTAGGCTCAGGTAAAGAGTAGAAATCCCAGTAGTCATCATGCGTGTGTGTATTTTGGGATGGGGTGGGATAATAAACAGCATTCCTATGGGTATTCAGAAAGggcctgtatgtgtactgtatctactgtatgtatgtactacATTATTATGTTGGGATTGTATTTAATTGTATTAACACGGTGCCATACCAAAGATACAGTAGATTGTAAGCCAAGTCACTCACCTAATTAAGTGTTTATTCAATAATGCCATttcaacatacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcctacaattgtccattaaaataacatcaatttgatcagaaatgcagttgacattgttaatg
>XM_036961986.1
tatattgttgttcagcaTAGTATCATCTTTGCTCAGGTTTAAATTATTTTCACTCGGCATCATCTTTTCCTGAAGTGTGGTCAGTAAAAGGGTTAAATGGGTGGGCTTTCCTCTTGACCCCCACAAGGGAATGGGACAGCGGATaaatgaggaggatgatgagagCGAATCACCTCACATGACAGCGATTATAACCTGGGAGTTTGGTGGgcgtgggagagaaagagaacgagagagagagagagagagagagagagagagagagagggagaataacaGAGCACAGAACACGTGAAGAAATGTCTTAATTCGGCGCGCAAATGTGCATGTATTATCTCACCGCCATTTACCGGGTGATTATTTGACGCTTGTGATCTAccgttcatcaaagGTGAGATGGCGAGCAGGTTGGGGCTCCCCCATGACAGTTCCCTACACAGATGCATGCTGGTCCTGACCTTCCTGCTCCTACTGTGCGAGATCGTTGTCAGCCGCCTCTGTAACTCCCTCATCACCATGGTGGATGTCTTCCACACCCTTTTCATCCTCATGCACATGGCTCTTCCTCAACCCACCCTGGGCAGAGGTTCCCCAAAACCCccacctgcctcccctctctccacccccaacacctccactCAGTCACCTGTCAAAACTCCCCCATATTCCCCAGCCACCTCCGGTGTGTTCCCCAGACCCCTCACCCCTGTGGCCTCCCTGTGTGGCCTGTCCTACAGTGGGGCGAGGGTCCAGCCCCTGGGGGCTCTGATCTCAGCTCTTCTGCTGGCTGccttgtgtgtctctgtctctctagagATCCTCAGCCACACCCTGCAGCCCCACCCTATACAGCGCCCTCTTTTGGCCACGGTGATGGGGGCTGTCAGCCTGCTCTACAACCTCCTGGTGCTGGCGCTCAGCTGGGGCAGCTGGCTTGGGACCAAGACTAGAGCTGcctgggagggggaggagagctcTGTCCTTGGTGTGAATGGAAAAGTCAAGGTCCAGACCAAAGACAGCAATGCAGTGGGGGGAGAGAATTACATCAGTAACTCCCCTACATCTCTAGATGGTGCCTTCCAAGATGGAACACTTGTACTCTGTAACCCTGGGACCTCCAGTGTCCTGAACCCTGACAGTGATACTCCGCACCCATCCCAGACATCCCCACTCCATACCGTGGCCCCTCAGGGTCCCCTTTCAGACCACTGCCACGGAGCACACACACTCCCTGCAGACTGCAGAACTTCAGAGACACCAAGCAGCTTCCCACATCCAGTGGCCAGTGTCTGTCATCCAAAGGACCTCCACTCTGAAGTGTCTAAGTACAGGGCCTGCAAGGGACACAGAGACCCCACCACAGCCTCAGCCCTAAAGTCAGAAAGCCCTACAAGCCTCAGGGTCCAACTTCCCTCCTGTCTCCCATCCCTCATCGCCCTCACTCAGGCACTGCTAGGCTCCATCCTGGCACTCACCAACGGACTTACCTTGCTACTACTGGGCCCAGACTGCATGCATGGCTCTGGGGCCTGTGGCCCCTTCGTCTACCTGGACCCTGGCTTCTCCATGGTGGCTGTGGGGGTGCTGCTGGCCACCACTCTGCCCCAGGTGTGCCGCTACGGTTGGCTGCTGCTCCAGGCCGTCCCgccccaggtgtgtgtgtctgatctgGGCCGGCGGATCGCCAGTGTGCCAGGGGTGCAGGCGGTGCACGACCTCCACGTGTGGCAGCTGACAGAGAGCTGCCTGGTGGCGTCTGTACATGTCCACTGCCACGCTGGGTTCCAGATTCACAGGTGTGGTGATTTGTTGTCGGGGGTCACCAAGGTGCTGCAGAGTGTAGGTGTGAGCTGCTGCACCGTACAACCAGagttcctcctctctactcccacAGCCAACGGCAACCTGGATAACAACGGCACCAACCCCGCCATCATCCATAGGGAGATGCCCTCACACCTCGCCTGCAGCCTGGCCTGTGGGAAGGGGTGTGCTGGGAAGATGTGCTGTGCTCCTCTGGAGGAAGGGCCTGCAGAGCCACTGGCACCCCCTGCTGGGGAAACTGAGCAGGAGCCTCACGTGCTGATCATCGAGAACACCTTTCTTTGAGGGAAGGACCTCTAGGATGTATCTCAGTAATGTAGAGTGTGCTCCTTGCATCCTTTCCTTCATATGAAACTGATGTGAGAGGCCTGAAGTGGAGCAAACCACTTTTGGCAATTAAGATTCAGCTTGGGGATTGAATAGAATACATTATTATTGTCAGAATATTCTTAAAGACTTCTGTCCCCATGTCATTGAGGTACTTTTAGAGCGCTAGATAGCCTAATGTAAGAATTAGGCTCAGGTAAAGAGTAGAAATCCCAGTAGTCATCATGCGTGTGTGTATTTTGGGATGGGGTGGGATAATAAACAGCATTCCTATGGGTATTCAGAAAGggcctgtatgtgtactgtatctactgtatgtatgtactacATTATTATGTTGGGATTGTATTTAATTGTATTAACACGGTGCCATACCAAAGATACAGTAGATTGTAAGCCAAGTCACTCACCTAATTAAGTGTTTATTCAATAATGCCATttcaacatacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcctacaattgtccattaaaataacatcaatttgatcagaaatgcagttgacattgttaatg

Function

NR:

description
uncharacterized protein LOC110503508 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581850.2 False 2729 mRNA 0.53 5 3295694 3300798
XM_036961987.1 False 2716 mRNA 0.53 5 3295694 3300800
XM_036961986.1 True 2720 mRNA 0.53 5 3295694 3300801

Neighbor

gene id symbol gene type direction distance location
trnastop-uca-3 NA coding downstream 3378 3234183 ~ 3292316 (-)
trnastop-uca-2 NA coding downstream 13532 3282076 ~ 3282162 (-)
trnastop-uca NA coding downstream 14175 3281433 ~ 3281519 (-)
LOC110503509 NA coding downstream 14636 3278291 ~ 3281058 (-)
LOC110503563 LOC106612495 coding downstream 107020 3179587 ~ 3188674 (-)
LOC110503507 ppp1r37 coding upstream 9476 3310277 ~ 3365892 (-)
LOC110503302 LOC106612383 coding upstream 98934 3399735 ~ 3412144 (-)
LOC110503506 gemin7 coding upstream 129326 3430127 ~ 3432826 (-)
LOC110503301 ptgir coding upstream 298338 3599139 ~ 3642485 (-)
LOC110503502 LOC106612376 coding upstream 375870 3676671 ~ 3687418 (-)
G1892988 NA non-coding downstream 47376 3206745 ~ 3248318 (-)
G1892985 NA non-coding downstream 60660 3227516 ~ 3235034 (-)
G1892984 NA non-coding downstream 96390 3199070 ~ 3199304 (-)
G1892980 NA non-coding downstream 99137 3196329 ~ 3196557 (-)
G1893104 NA non-coding upstream 132865 3433666 ~ 3433881 (-)
G1893105 NA non-coding upstream 136128 3436929 ~ 3437152 (-)
G1893116 NA non-coding upstream 145007 3445808 ~ 3446048 (-)
G1893122 NA non-coding upstream 150336 3451137 ~ 3451356 (-)
G1893167 NA non-coding upstream 155238 3456039 ~ 3510646 (-)
G1892888 NA other downstream 276253 3013455 ~ 3019441 (-)
G1892841 NA other downstream 358643 2936184 ~ 2937051 (-)
G1891499 NA other downstream 1490632 1802008 ~ 1805430 (-)
LOC110503527 med29 other downstream 2204704 1087227 ~ 1091024 (-)
G1889857 NA other downstream 2736595 557130 ~ 559099 (-)
G1893790 LOC106612372 other upstream 609908 3881288 ~ 3914848 (-)
egln2 egln2 other upstream 753034 4053778 ~ 4075685 (-)
si:dkey-202l22.3 LOC106612399 other upstream 991048 4289886 ~ 4294714 (-)
G1894611 NA other upstream 1052777 4353578 ~ 4353936 (-)
G1896030 NA other upstream 2568095 5868896 ~ 5869218 (-)

Expression


Co-expression Network