LOC110503506 (gemin7)


Basic Information

Item Value
gene id LOC110503506
gene name gemin7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 3430127 ~ 3432826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581845.2
TAACAGAGGGACAACAAAATGTACGGTGTGCATACTCAAACGACCCTCATAAAACGTTCTCTTTGGCCAACTTCAAAGAGAATCTGTTTATTCTGAGTCGAGCGACAAAAACTCGAAATGAGTACGCTCGTGACCGTGCTTCGCCTCCCGAGAGGACCTGATCCGAATGGCCGCGGATTCGACCCGAACGCAACCCGTTTCGTCGCGCTGTGTCCAACAACTATTTCTGCTTCGAATGAAACATGGACTGACTCTGTCGAAGTGGGAGAAGAGCAGCGTGCACGGTCGGCTTTGAGAGAAAGCTTCCTGAGGACGCTCATAGCCATGACCAACAAGCAGGTGCAATTCCACATGTACGAGAGAGTCGAGGTTGAGGCGAAGTTTGGAGCGTCGGACATTGACGTGCTCAACTTCCAAGTTTCGGATCTACAGACCCCCATTGGGGTGCAGAAAGAAGCTCTGCTCAGGTGCCAGGATGTCATTTCATACTCCTTTGATCTCTGAACAGTGCTGTTCACTTATTTGTGCTGTTTTTGAGCAGATATCCAACAAACTGAATCTGATTTGTACTGTTATTTCTAATATGATTTGGTTTGACACACCGTGCGTTTTGGGGAGTCAATGATGACAGGTCCATTGCTACACAGTGTTCTGTCTGGGTGAATATGTAGCAAGATGTTACCGTTTATTATTCTGTTACTTTGATTAAGAGGTAGACTTGCCATTGCCATATGTTATATTTATGTGGCCAGCCAGGTATTGAGAACACTGCTATACAGTATGTCTATGATTTGTTTTGTAGTTTCCAATTCAATGTACCTCCACTGGAGGGAGATGTCAGCACTGTCTTTACAACGGGTATGTCCGGGGGCACCCATACCACCAGGTTCTCTGACACTCAGCTGTCCAGTCCATTTCATTAGGAAGAGATGGGGGATAAACACATGTCTTCAGGTGGAATTTGGATATAATTGTCTGGAAACCTGAATCTTGCCATTATTTTGTGATTACAGGACAATGTGGTTCTTGTCTTCCTTTTCATAAGATCTGTTGCTGAGATATGTTTACCAATGGGCATATGAACttcatattttttttcttaaaaaaaaaaaaaactgactaAACATTCTGTCACTTGCATTGAATTTGATAATGTGTTAGTTAAGTAGGCTATATATTGTAGATAAAGTGGTGGTAGTATCGAGCTTATCGTATTCCTCACTGAATGAAATATTCACGTTCAGTGGTCACGTCGTCTTTCAGTGTCATATGGCTTtaattttttgtaaatatatttagATAAACCCTGAAATACCTTTCAGTATTGTGCCAGTCAGCACAGATATTGCAACCTCTGGTTTTCTAAATTTAATATGACCTAGCCTAAATGATCTTGACTGCCCAATCTTTAAGACTGCAAATATAATATTCACAAATGAATAAGAGAGTCTACAGTGAGCTAAACAAGTATAAATGACTGTTTACGGTCAAATGTCCTTACATACTTTGTGTATGGGTTAATATGATACCTTAGTTTACACGTTTGTCAGTTGAAACAGACCTGATGAGTGGTCAGTAGTGGTCAGGATTCATCATCCTCACAAAACGCCCTCATGATGAGGCATCAGTAATATGTAATCTTCCTAAAAGGTGCGTTTTTGTGTGCGTCTCCAGTAAATCATTTTATTGGAATGCATTAGGCAATCGGTGTGCAGTGCACAGTCTCCCTCTGTTGTGCCTGAATGATACCGACCGCTTTGTGGAGACGGTCAACAATGAGAGGGTGAGTCATAACCATCCCGCCCCCCTCTAAAGTATGAGTGAAATCCTGTGACGTTATTGGGCTCTTGTGATTAAATCAGGAAGCCCTCAAGGACGACCAATGTTAATTTCATATTcccaggcagcaacagcagcgctCAACTCCCTCACAGCCCGCACTCTCCTTGATGTGCGTCCCATTCAAGCTCAGTGAGGCACGTGGTCTGAATGTTAATCTTGTTGCAGTAGTGTATCGACAATAGAGTGAGACGTTACATCTAGTTGCTGTGTGTTTACTGTCTATGAGTGAGAAGAAGTTGAATAGTCACTTTATGAAAATCCTATTTTTGTGCTGTGGACTGAATCTGGTGGGCTGCCTCATTTGTTGCATTGTGGGCACACTGTTTCTCAATGTTATCTACTCTTGAGTTTCTCTTTGTTGGCAGTCTGCTTCTCTGATTCAAGTGGGAAAACATCCCTGTGCGCAGGTGTAAGTGTGCGCCAGTGTTACAAGGGGAGAGGGGCTGTCACGATGGTACAAGGAATCTGCCCTGTCACACCATCAGCCAACAGGAAGCACATTACGCTCCTTCCTGTTTGTGGCCCTCTCACTTCCTGTCAAGTGTCTGTGATAACTTACAAAAATACATTGCCACATCCACTTAATCATACCCTGCCCATAATTTCCTACATTAAAACTGTTGGGCAGTTACTTCTAAGGAA

Function

symbol description
gemin7 Predicted to be part of SMN-Sm protein complex. Orthologous to human GEMIN7 (gem nuclear organelle associated protein 7).

NR:

description
gem-associated protein 7-like

GO:

id name namespace
GO:0032797 SMN complex cellular_component

KEGG:

id description
K13135 GEMIN7, SIP3; gem associated protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581845.2 True 2484 mRNA 0.43 2 3430127 3432826

Neighbor

gene id symbol gene type direction distance location
LOC110503302 LOC106612383 coding downstream 17983 3399735 ~ 3412144 (-)
LOC110503507 ppp1r37 coding downstream 64235 3310277 ~ 3365892 (-)
LOC110503508 LOC106612386 coding downstream 129326 3295694 ~ 3300801 (-)
trnastop-uca-3 NA coding downstream 137811 3234183 ~ 3292316 (-)
trnastop-uca-2 NA coding downstream 147965 3282076 ~ 3282162 (-)
LOC110503301 ptgir coding upstream 166313 3599139 ~ 3642485 (-)
LOC110503502 LOC106612376 coding upstream 243845 3676671 ~ 3687418 (-)
LOC110503499 ap2s1 coding upstream 372216 3805042 ~ 3811028 (-)
LOC118944023 tmem160 coding upstream 600088 4032914 ~ 4037053 (-)
egln2 egln2 coding upstream 620952 4053778 ~ 4075685 (-)
G1892988 NA non-coding downstream 181809 3206745 ~ 3248318 (-)
G1892985 NA non-coding downstream 195093 3227516 ~ 3235034 (-)
G1892984 NA non-coding downstream 230823 3199070 ~ 3199304 (-)
G1892980 NA non-coding downstream 233570 3196329 ~ 3196557 (-)
G1893104 NA non-coding upstream 840 3433666 ~ 3433881 (-)
G1893105 NA non-coding upstream 4103 3436929 ~ 3437152 (-)
G1893116 NA non-coding upstream 12982 3445808 ~ 3446048 (-)
G1893122 NA non-coding upstream 18311 3451137 ~ 3451356 (-)
G1893167 NA non-coding upstream 23213 3456039 ~ 3510646 (-)
G1892888 NA other downstream 410686 3013455 ~ 3019441 (-)
G1892841 NA other downstream 493076 2936184 ~ 2937051 (-)
G1891499 NA other downstream 1625065 1802008 ~ 1805430 (-)
LOC110503527 med29 other downstream 2339137 1087227 ~ 1091024 (-)
G1889857 NA other downstream 2871028 557130 ~ 559099 (-)
G1893790 LOC106612372 other upstream 477883 3881288 ~ 3914848 (-)
si:dkey-202l22.3 LOC106612399 other upstream 859023 4289886 ~ 4294714 (-)
G1894611 NA other upstream 920752 4353578 ~ 4353936 (-)
G1896030 NA other upstream 2436070 5868896 ~ 5869218 (-)

Expression


Co-expression Network