LOC110503499 (ap2s1)


Basic Information

Item Value
gene id LOC110503499
gene name ap2s1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 3805042 ~ 3811028 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581835.2
ATTTCCCGCAATGCCTTGCGCCTTTAGCTTTTCCTGTACATCCTGCTCGGTAAGATAGCGGGCAATCGGTCGTCAAAACAATCCTGGTAATTTGGAGAATTTATGAAAAATCAAATAAAAGTCACCAGGCTAAGGGAATTTCTATTTGTTTTAAAACAACTGACTCAAAGAAAAGACAATGATCCGCTTCATCCTTATTCAGAACCGAGCAGGGAAGACCCGACTGGCCAAGTGGTACATGCAGTTTGATGACGACGAGAAACAGAAGCTGATTGAGGAGGTGCACGCTGTGGTGACTGTCCGTGATGCCAAGCACACCAACTTTGTGGAGTTCAGGAACTTCAAGATCATCTATAGGCGCTATGCTGGTCTGTACTTCTGTATCTGTGTGGATGTGACAGACAACAACCTGGCATACCTGGAGGGCATTCACAACTTTGTGGAGGTGTTGAATGAGTATTTCCACAACGTGTGCGAGTTGGACCTGGTGTTCAACTTCTACAAGGTGTACACGGTGGTGGATGAGATGTTCCTGGCGGGGGAGATCAGAGAGACGAGCCAGACCAAGGTCCTCAAGCAGCTGCTAATGCTCCAGTCCCTCGAGTAGCCAACAGGGCAGCCATCTTGACCAGTCCATCACCCACCCACCATCAATGTCACTCTGGAAAGGACCCCCTCTCATTTGCCATCTTCCACCCCTTACAGAAACCAGGGGCCTATTCACGAGGGTGCAGTCacagaacgttcagatagaaatgcagGGTATAGAACAGACATCGTTTTCGGTCATGCAGAATCGATTCAGCTCTACACATTACATTTCGATTTGCAACAATGAGAAAGTTTCAACCTCTTATGTCCCAGAAAGGCTGTATTTTGGTGCTGCAGATACGGCCCTTATCATTTCATTTCTTAACCACCAGTTCAAGTAAAATCATCTGGATGAGTATATTTGCAGCACTGAAAATAAATGTTCTCTCTATGCCCTGTCTCAAGCTGGAGGCTGCACTTACGGCAGTTCTATTAAGGTTGCCAGTTATTCACCTGTACATCCCGCCATCAAACCTAtgctagtggagagagaggatgacaagGGTTCAATGTTCTGGCAACCCCAGTGTCACTACAGTtgctaaaaaataaattaaaaaagcaTAAGAAAACCCTTGCGAAAACTGCCTGTGATATCCCTGTCTTCTCTGCACCTACGGTGCATGTGTCCTATGTCTTGTCTGGGAGAATCAGTTTGAGCTGAGGAGTGACTAAACCACCTCTACAAATGCCCATCGAAGCCGTTGACCTCTCGTGGTGGTTCACAGTTCAATGGAGTGCACTTTAAGTGTGCTGTTGAGAGGTCTGGCAATGGCAACCTGTGCAGGGTTTCATCAACTCTCTGTGATATTACATAGGTGGTCCTCCAGTCTTAAATAACTGTCAGTATCATGTCAGGTTGTATATCAGACAATGCGTCTCCACTCCACATAATGGTGCTCGTTAGTCCCAACCAGATATGTTCAActttaaacacacacaaatactttaAGGGAAATTATACAGTGATATATTTTAAGTAAAGCAGTACTGTGAAGTTTGTTTTGTATGGTGTACATATATAGTGTATCTTGTGTGAAACCATTGTCTATTCCAGGCCTTTCCCCAGCTTCTCCTGCCTGTCTCGTTGTCAGTGTTTTAATACACCGATCTGAATTGGGGGAAAATTCATTAATATTCCCATGTCACATAAATAGGGTTTCCAAACAACCAGAGGCCAAATGATATGACCAAAACCAGAGGCAGTTGTCGAGTAGGTCTGTGACAACACCGCCTTGTAACTCGTCCCTCATTGTAACCATGTCCAGTCTTGCACCTCCCCAACACGTCACAGGTTTCACATGCTACTATTATGGTTTAAGTTTTTCTTTGTCTTATTTTGGATTTAGTGCAATGTACTACTTCCCCTCTCCTGTCCACCTGTCTGTCCTGTGTGAGATTGTTGAAAGATGTGTTGGGGTCTCCTGTTGCTAAACTACCCAGTCAGTGTAtataaaaaaacaaatcaaagtaCTAAATAAAATGTTAACCTGTG
>XM_021581836.2
CTCAATTTCCCGCAATGCCTTGCGCCTTTAGCTTTTCCTGTACATCCTGCTCGGTAAGATAGCGGGCAATCGGTCGTCAAAACAATCCTGATCCGCTTCATCCTTATTCAGAACCGAGCAGGGAAGACCCGACTGGCCAAGTGGTACATGCAGTTTGATGACGACGAGAAACAGAAGCTGATTGAGGAGGTGCACGCTGTGGTGACTGTCCGTGATGCCAAGCACACCAACTTTGTGGAGTTCAGGAACTTCAAGATCATCTATAGGCGCTATGCTGGTCTGTACTTCTGTATCTGTGTGGATGTGACAGACAACAACCTGGCATACCTGGAGGGCATTCACAACTTTGTGGAGGTGTTGAATGAGTATTTCCACAACGTGTGCGAGTTGGACCTGGTGTTCAACTTCTACAAGGTGTACACGGTGGTGGATGAGATGTTCCTGGCGGGGGAGATCAGAGAGACGAGCCAGACCAAGGTCCTCAAGCAGCTGCTAATGCTCCAGTCCCTCGAGTAGCCAACAGGGCAGCCATCTTGACCAGTCCATCACCCACCCACCATCAATGTCACTCTGGAAAGGACCCCCTCTCATTTGCCATCTTCCACCCCTTACAGAAACCAGGGGCCTATTCACGAGGGTGCAGTCacagaacgttcagatagaaatgcagGGTATAGAACAGACATCGTTTTCGGTCATGCAGAATCGATTCAGCTCTACACATTACATTTCGATTTGCAACAATGAGAAAGTTTCAACCTCTTATGTCCCAGAAAGGCTGTATTTTGGTGCTGCAGATACGGCCCTTATCATTTCATTTCTTAACCACCAGTTCAAGTAAAATCATCTGGATGAGTATATTTGCAGCACTGAAAATAAATGTTCTCTCTATGCCCTGTCTCAAGCTGGAGGCTGCACTTACGGCAGTTCTATTAAGGTTGCCAGTTATTCACCTGTACATCCCGCCATCAAACCTAtgctagtggagagagaggatgacaagGGTTCAATGTTCTGGCAACCCCAGTGTCACTACAGTtgctaaaaaataaattaaaaaagcaTAAGAAAACCCTTGCGAAAACTGCCTGTGATATCCCTGTCTTCTCTGCACCTACGGTGCATGTGTCCTATGTCTTGTCTGGGAGAATCAGTTTGAGCTGAGGAGTGACTAAACCACCTCTACAAATGCCCATCGAAGCCGTTGACCTCTCGTGGTGGTTCACAGTTCAATGGAGTGCACTTTAAGTGTGCTGTTGAGAGGTCTGGCAATGGCAACCTGTGCAGGGTTTCATCAACTCTCTGTGATATTACATAGGTGGTCCTCCAGTCTTAAATAACTGTCAGTATCATGTCAGGTTGTATATCAGACAATGCGTCTCCACTCCACATAATGGTGCTCGTTAGTCCCAACCAGATATGTTCAActttaaacacacacaaatactttaAGGGAAATTATACAGTGATATATTTTAAGTAAAGCAGTACTGTGAAGTTTGTTTTGTATGGTGTACATATATAGTGTATCTTGTGTGAAACCATTGTCTATTCCAGGCCTTTCCCCAGCTTCTCCTGCCTGTCTCGTTGTCAGTGTTTTAATACACCGATCTGAATTGGGGGAAAATTCATTAATATTCCCATGTCACATAAATAGGGTTTCCAAACAACCAGAGGCCAAATGATATGACCAAAACCAGAGGCAGTTGTCGAGTAGGTCTGTGACAACACCGCCTTGTAACTCGTCCCTCATTGTAACCATGTCCAGTCTTGCACCTCCCCAACACGTCACAGGTTTCACATGCTACTATTATGGTTTAAGTTTTTCTTTGTCTTATTTTGGATTTAGTGCAATGTACTACTTCCCCTCTCCTGTCCACCTGTCTGTCCTGTGTGAGATTGTTGAAAGATGTGTTGGGGTCTCCTGTTGCTAAACTACCCAGTCAGTGTAtataaaaaaacaaatcaaagtaCTAAATAAAATGTTAACCTGTG

Function

symbol description
ap2s1 Predicted to enable clathrin adaptor activity. Acts upstream of or within habituation. Predicted to be located in membrane. Predicted to be part of AP-2 adaptor complex. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in familial hypocalciuric hypercalcemia 3. Orthologous to human AP2S1 (adaptor related protein complex 2 subunit sigma 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0006886 intracellular protein transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II biological_process
GO:0050690 regulation of defense response to virus by virus biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0016032 viral process biological_process
GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway biological_process
GO:0030122 AP-2 adaptor complex cellular_component
GO:0005829 cytosol cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K11827 AP2S1; AP-2 complex subunit sigma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581835.2 False 2086 mRNA 0.44 5 3805042 3811024
XM_021581836.2 True 1995 mRNA 0.45 5 3805042 3811028
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110503502 LOC106612376 coding downstream 117624 3676671 ~ 3687418 (-)
LOC110503301 ptgir coding downstream 162557 3599139 ~ 3642485 (-)
LOC110503506 gemin7 coding downstream 372216 3430127 ~ 3432826 (-)
LOC110503302 LOC106612383 coding downstream 392898 3399735 ~ 3412144 (-)
LOC110503507 ppp1r37 coding downstream 439150 3310277 ~ 3365892 (-)
LOC118944023 tmem160 coding upstream 221886 4032914 ~ 4037053 (-)
egln2 egln2 coding upstream 242750 4053778 ~ 4075685 (-)
LOC110503493 LOC107566082 coding upstream 362992 4174020 ~ 4176885 (-)
si:dkey-202l22.3 LOC106612399 coding upstream 478858 4289886 ~ 4294714 (-)
LOC118944008 NA coding upstream 492983 4304011 ~ 4304884 (-)
G1893748 LOC106612374 non-coding downstream 5785 3790382 ~ 3799257 (-)
G1893719 NA non-coding downstream 61184 3743655 ~ 3743858 (-)
G1893718 NA non-coding downstream 64241 3740499 ~ 3740801 (-)
G1893713 NA non-coding downstream 75885 3728814 ~ 3729157 (-)
G1893691 NA non-coding downstream 111843 3692969 ~ 3693199 (-)
G1893758 NA non-coding upstream 7844 3818872 ~ 3819712 (-)
G1893761 NA non-coding upstream 11978 3823006 ~ 3823417 (-)
G1893762 NA non-coding upstream 12938 3823966 ~ 3824179 (-)
G1893763 NA non-coding upstream 13270 3824298 ~ 3824676 (-)
G1893764 NA non-coding upstream 13794 3824822 ~ 3825036 (-)
G1892888 NA other downstream 785601 3013455 ~ 3019441 (-)
G1892841 NA other downstream 867991 2936184 ~ 2937051 (-)
G1891499 NA other downstream 1999980 1802008 ~ 1805430 (-)
LOC110503527 med29 other downstream 2714052 1087227 ~ 1091024 (-)
G1889857 NA other downstream 3245943 557130 ~ 559099 (-)
G1893790 LOC106612372 other upstream 99681 3881288 ~ 3914848 (-)
G1894611 NA other upstream 542550 4353578 ~ 4353936 (-)
G1896030 NA other upstream 2057868 5868896 ~ 5869218 (-)

Expression

LOC110503499(ap2s1) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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LOC110503499(ap2s1) Expression in each Bioproject

Bar chart with 21 bars.
LOC110503499(ap2s1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network