si:dkey-202l22.3 (LOC106612399)


Basic Information

Item Value
gene id si:dkey-202l22.3
gene name LOC106612399
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 4289886 ~ 4294714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581824.2
ggagaaaaagagggagggggtGAAGGGAGGATAGTGTTGGGACACCACACAATCTCTCTTTTCAATCACCTGCCTATATATATGTGCTGTGAAGGATACAGCGTCTGTGGCAGCCTGCTACCCCCCATTCCCAGACTTTCTGCTGGAGCACAACCACTGGTtgggctcagagagagagagagagagagagagagagagagaggggcaatgCTCACAtcacagggagagggggaagagaagaggaagaggagagagacacagtcaCAGAAGTGAAGCGacgtgacagagaggagagacgcgTACTGCCTCTGAGGAAaagcaaggcactgtacaaGGGAGCAGTGCACTGAGATGGATCCCATCCTGGAGGTCCTGAGTGGGGCCAACACTACTGGAGGCCCCTCCCTGAACCACAGCAACAACCCCCTGGACATGTTCTCTGGCATGCAGCTGCTGCTGCGCTTCAAGCCCCTCTTCCTGCCCCTCTACTGCCTCCTGGTGGCTGTGGCCGGCATAGGCAACTCCATCCTGCTGGCCTGTATCCTGGCCGATAAGAAGCTCCACAACGCCACCAACTTCTTCATCGGTAACCTTGCGGCCGGCGACCTGCTGATGTGTCTGACCTGTGTCCCTCTGACCGCCTCGTACGCCTTCGACAGCCGCGGCTGGGCCTTCGGACGCCCTCTCTGCCACCTGGTGCCACTGCTGCAGGCTGCCACCGTCTTCGCCTCGGTGCTGTCCCTCACGGCCATCGCCGTGGACCGCTACGTGGTGGTGGCCCACCCAGTGAGGAGGAGGATCTCTGTCGGGGGCTGCGGCGCGGTGGCTCTGGGGGTGTGGGGGTTGTCTCTGGCCCTggctgcccctccctccctccacacccgCTACCTGGACCTGAGGCCCCGTGGGGTGGAGCTGGTGGTGTGTGAGGAGTTCTGGCCCAGCTCTGGCCAGCTCAGGCTGCTCTACTCCTGCTGTATCCTGGTAGCCTCCTACATGATCCCTCTGCTGTCAGTCAGCGTGTCCTACTGTGCCATCACAGTGCACCTGAGACGCCACACGCTGCCCGGAGAGCCCTCACACTGCCAGCAGCGCtggagccagaggaggaggaaaaccttCTCTCTCCTGGTGGCCTCTGTGCTTGCCTTTGCCCTCTGCTGGCTGCCCCTgcaggtGCTGAACCTGCTGCTGGACCTGGACCCAGACTACCACATCGTGGACAAGCGCTATGTCAACGTGCTGCAAGTGTGCTGCCACCTGGTGGCCATGAGCTCCGCCTGCTACAACCCCTTCATCTACGCCTCCCTGCACAGCAAGATATGGCTGCACCTCAAGGGCTACCTGTGCCCTTGCCGCCGCCAGGGGCCACCAGGCGGCCAGCTCCTCTCCCGCTGCACCTCCCGGAACCCGGCCACCTGCCTCAGCCTGCTCTCTGAGGTCCCCGCCCCCGGGAAGGAGACCCCGGGGGCCGCCGGCCGAGAGTCCGACAGCACCCTCTGAGAACATCAGGAACCACAGCATGGTTTATAGATAGGGTTCAAAGGTCATATGCCATAGCAGCAGCCATTACACATATCTCATACACGCAGTTAGAGACGACgtaggagcagggaggagggggagaatgagGAGAGGCAAAGAGACCGTGGGACAGGGGGGGGGATCAGGCTGCTCTGGAGATCGTCACCCCTCTGGGCCGTTCATTCTATTTGCCTTGGGTGTCACTACAGCAGCCCTGCTGCCCAGGACGATGAGCAGGGTCCCGCATCTTCTGTGAGGCAGAGCGTGTAAACACTGTTATGACCTTGGGCCGGGATGCAGCAGAGGCAGAGCGGCAAAGCGGCAGAGGGGGGTGATGACCCTGCTCTGAACTCCTCACTCTCCAAATGGattatacacacaggaaacagaggAGGGCAACAGGGCACAAACAGTCCACAAAGATAGCTCACCCTTTTCTGTTGTTCCCTCGTTCTGCTGTGCCTTCGCCTGATTTTGACATGTTTCCTACTTTCTCTCGATCCCTTTTTCCGATTCATTTCAATGCATGTAGCTTTACTTTtattttgtctttctctctgcctgggCCATATGGAGCGATTCCCCAGCTCAGTGCTAGTTAGGTGTGTTGGAGTATCTTTGAACAGGTGTTGTTCCCTGCAGGATTTCCCTGCAGTCTCAAACCCAATCAGCTCCCCGGAACTCAATTAATCCGAAGCAAAGCGCTATCTGTGCAGTCACCCACAGTGATATTATGGCTGCCATGTTGACTGACAGCCCAGGAACAGCACCCGGTCTGCCAAATGTACCTCACATTTGGATTCGTTTCTTATCTGTTGCTGAGTAGCGCAACTAGAACGCAACATACACTTTTTAACCCATTGTTATGCCACTTGAGCCTAATAAAATGGATTCATTCC
>TU2166626
gggCCATATGGAGCGATTCCCCAGCTCAGTGCTAGTTAGGTGTGTTGGAGTATCTTTGAACAGGTGTTGTTCCCTGCAGGATTTCCCTGCAGTCTCAAACCCAATCAGCTCCCCGGAACTCAATTAATCCGAAGCAAAGCGCTATCTGTGCAGTCACCCACAGTGATATTATGGCTGCCATGTTGACTGACAGCCCAGGAACAGCACCCGGTCTGCCAAATGTACCTCACATTTGGATTCGTTTCTTATCTGTTGCTGAGTAGCGCAACTAGAACGCAACATACACTTTTTAACCCA
>TU2166628
gaagaggaagaggagagagacacagtcaCAGAAGTGAAGCGacgtgacagagaggagagacgcgTACTGCCTCTGAGGAAaagcaaggcactgtacaaGGGAGCAGTGCACTGAGATGGATCCCATCCTGGAGGTCCTGAGTGGGGCCAACACTACTGGAGGCCCCTCCCTGAACCACAGCAACAACCCCCTGGACATGTTCTCTGGCATGCAGCTGCTGCTGCGCTTCAAGCCCCTCTTCCTGCCCCTCTACTGCCTCCTGGTGGCTGTGGCCGGCATAGGCAACTCCATCCTGCTGGCCTGTATCCTGGCCGATAAGAAGCTCCACAACGCCACCAACTTCTTCATCGGTAACCTTGCGGCCGGCGACCTGCTGATGTGTCTGACCTGTGTCCCTCTGACCGCCTCGTACGCCTTCGACAGCCGCGGCTGGGCCTTCGGACGCCCTCTCTGCCACCTGGTGCCACTGCTGCAGGCTGCCACCGTCTTCGCCTCGGTGCTGTCCCTCACGGCC

Function

NR:

description
prolactin-releasing peptide receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581824.2 False 2423 mRNA 0.58 3 4289886 4294714
TU2166626 False 297 lncRNA 0.49 1 4289925 4290221
TU2166628 True 514 TUCP 0.61 2 4291849 4294478

Neighbor

gene id symbol gene type direction distance location
LOC110503493 LOC107566082 coding downstream 113001 4174020 ~ 4176885 (-)
egln2 egln2 coding downstream 214201 4053778 ~ 4075685 (-)
LOC118944023 tmem160 coding downstream 252833 4032914 ~ 4037053 (-)
LOC110503499 ap2s1 coding downstream 478858 3805042 ~ 3811028 (-)
LOC110503502 LOC106612376 coding downstream 602468 3676671 ~ 3687418 (-)
LOC118944008 NA coding upstream 9297 4304011 ~ 4304884 (-)
LOC110503487 dscaml1 coding upstream 47139 4341853 ~ 4637877 (-)
LOC110503567 NA coding upstream 384062 4678776 ~ 4691209 (-)
LOC110503569 LOC106612728 coding upstream 402719 4697433 ~ 4714061 (-)
LOC110503570 scn4b coding upstream 469022 4763066 ~ 4788688 (-)
G1894004 NA non-coding downstream 1776 4287566 ~ 4288110 (-)
G1894000 NA non-coding downstream 9415 4280264 ~ 4280471 (-)
G1893999 NA non-coding downstream 9856 4279822 ~ 4280030 (-)
G1893998 NA non-coding downstream 10918 4278714 ~ 4278968 (-)
G1893987 NA non-coding downstream 26945 4262687 ~ 4262941 (-)
G1894033 NA non-coding upstream 39659 4334373 ~ 4334730 (-)
G1894035 NA non-coding upstream 41527 4336241 ~ 4336457 (-)
G1894612 NA non-coding upstream 64877 4359591 ~ 4369050 (-)
G1894617 NA non-coding upstream 88015 4382729 ~ 4383202 (-)
G1893790 LOC106612372 other downstream 375038 3881288 ~ 3914848 (-)
G1892888 NA other downstream 1270445 3013455 ~ 3019441 (-)
G1892841 NA other downstream 1352835 2936184 ~ 2937051 (-)
G1891499 NA other downstream 2484824 1802008 ~ 1805430 (-)
G1894611 NA other upstream 58864 4353578 ~ 4353936 (-)
G1896030 NA other upstream 1574182 5868896 ~ 5869218 (-)
LOC118944082 NA other upstream 1887698 6181377 ~ 6231808 (-)
LOC110503590 LOC106612705 other upstream 2163807 6371958 ~ 6472758 (-)
G1899875 NA other upstream 3752065 8046779 ~ 8047974 (-)
si:dkey-202l22.3 LOC106612399 other upstream 1628 4289886 ~ 4294714 (-)

Expression


Co-expression Network