LOC118944093


Basic Information

Item Value
gene id LOC118944093
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 4336602 ~ 4341404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961957.1
tgtgtgtgtgtgtgttttccatctACCTCCTGCAAAGCACACTCCACTGACTGTTTGGATCTATCAGCGTGTACCTGATCTCTCTTCCGCGGCTGGACTGAGGAAATAAGGGAAATAAGCAGTATCACGGCGGGCCTATCCCGTGGCATCACGGAAGAGTTGTCACGATGATAGTTACAATGCTAACTGCCATGTACATGGTGGTCAGGGTAGTTGAAAAGATTGGAGTGCGGTTTGCGCGCAGGGATCCTCCCTTGCCTTTCGTGGTGACCCAGGTTCTGCCCTGGCAGGTGCACCATGTGTCCCAAAAGAGGAGGAGCAGCGCAACAGCAGAGTACGATGGCCCGAGGAGGAACAGCCTAGGAGTGTTCAGAAAGATAAATTCGGACCTCTTCCCCAATACAACGTTGGCTGTTGCTGTTGCCACTTTGGCTGTGCCCTGTCTCCTGACGTGCAACCGGAAAGACTCCGCCTGCAGCAACGGGTGTGCAGCGGCGCCCCTCGGCCTCACCCTGCCCGTGGAGAAAGCTGCCGCCACCATCCAGAACCAGTTCAGGAAGTACCAGCAGAAGAAGAAGGAGACCAAGTAGAAGCACACCCGCACCACCCGAGCTCtgcaagacagacagacggacacaaacacactggcgggggacacagacagacagacagacagacagacagacagaca
>TU2166677
gtgtgtgtgtgtgttttccatctACCTCCTGCAAAGCACACTCCACTGACTGTTTGGATCTATCAGCGTGTACCTGATCTCTCTTCCGCGGCTGGACTGAGGAAATAAGGGAAATAAGCAGTATCACGGCGGGCCTATCCCGTGGCATCACGGAAGAGTTGTCACGATGATAGTTACAATGCTAACTGCCATGTACATGGTGGTCAGGGTAGTTGAAAAGATTGGAGTGCGGTTTGCGCGCAGGGATCCTCCCTTGCCTTTCGTGGTGACCCAGGTTCTGCCCTGGCAGGTGCACCATGTGTCCCAAAAGAGGAGGAGCAGCGCAACAGCAGAGTACGATGGCCCGAGGAGGAACAGCCTAGGAGTGTTCAGAAAGAGTGAGTAATGAGACCAAACGATGTTTAAAAGAGTGAAATGCACACACCTCGAAAACATTTCCCAGGAAATGGATCTGAGAGGAAATCAttcgtgtatatatattttttaattggtaCACTGGTATGCTGCTCACACAGTGTTTTAATGGTTTGACTGGGTCTTCCTCATTGCAACCCAGTTACGGGGTCGAAAAATCATTTTCTCGTCAAAACACTTCGGGAGCAGTAATACGAGTGTGTGGATTTATGTTTTTCTTATCTATAACACCCGGACATTCCGTGGCAATATATCTATATTGATAACAACGTAGTAGAATCGCCTACCCAAAGTAGAGGCTTGCTGAAAGGCTACATTACTTCATAACCCCTAACGTTACAAACCACTTGTGCCTTACTACTTATGTACTTGCTACGTGTGCTACACACAGTAAATTCGGACCTCTTCCCCAATACAACGTTGGCTGTTGCTGTTGCCACTTTGGCTGTGCCCTGTCTCCTGACGTGCAACCGGAAAGACTCCGCCTGCAGCAACGGGTGTGCAGCGGCGCCCCTCGGCCTCACCCTGCCCGTGGAGAAAGCTGCCGCCACCATCCAGAACCAGTTCAGGAAGTACCAGCAGAAGAAGAAGGAGACCAAGTAGAAGCACACCCGCACCACCCGAGCTCtgcaagacagacagacggacacaaacacactggcgggggacacagacagacagacagacagacagacagacagacagacagacagagacctctCCAAAATGTAAAGAGCAAGAGGACTAAACATTTCCTCTAACTCTGTTACCTGTGTTGCGCAGCGTGTTAAGTAAAACAAAGTAAATAGTACAGACTGACttgacattatatacacacacacacacacacacacacacatacacacacacacacacacacacaaaatgaacgGACTAAATATGACACACATCCCGTCTTATACTATGTAACTGAATATATATGAATAATATGTCCTTTATATGctaatggttagagcattggactagtaaccgaaaggtttcaagttcatatccccgagctgacatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagattttgttcttaactgacttgcctagttaaataaaggtaaaataaaaataaata
>TU2166688
gtgtgtgtgtgtgttttccatctACCTCCTGCAAAGCACACTCCACTGACTGTTTGGATCTATCAGCGTGTACCTGATCTCTCTTCCGCGGCTGGACTGAGGAAATAAGGGAAATAAGCAGTATCACGGCGGGCCTATCCCGTGGCATCACGGAAGAGTTGTCACGATGATAGTTACAATGCTAACTGCCATGTACATGGTGGTCAGGGTAGTTGAAAAGATTGGAGTGCGGTTTGCGCGCAGGGATCCTCCCTTGCCTTTCGTGGTGACCCAGGTTCTGCCCTGGCAGGTGCACCATGTGTCCCAAAAGAGGAGGAGCAGCGCAACAGCAGAGTACGATGGCCCGAGGAGGAACAGCCTAGGAGTGTTCAGAAAGAGTGAGTAATGAGACCAAACGATGTTTAAAAGAGTGAAATGCACACACCTCGAAAACATTTCCCAGGAAATGGATCTGAGAGGAAATCAttcgtgtatatatattttttaattggtaCACTGGTATGCTGCTCACACAGTGTTTTAATGGTTTGACTGGGTCTTCCTCATTGCAACCCAGTTACGGGGTCGAAAAATCATTTTCTCGTCAAAACACTTCGGGAGCAGTAATACGAGTGTGTGGATTTATGTTTTTCTTATCTATAACACCCGGACATTCCGTGGCAATATATCTATATTGATAACAACGTAGTAGAATCGCCTACCCAAAGTAGAGGCTTGCTGAAAGGCTACATTACTTCATAACCCCTAACGTTACAAACCACTTGTGCCTTACTACTTATGTACTTGCTACGTGTGCTACACACAGTAAATTCGGACCTCTTCCCCAATACAACGTTGGCTGTTGCTGTTGCCACTTTGGCTGTGCCCTGTCTCCTGACGTGCAACCGGAAAGACTCCGCCTGCAGCAACGGGTGTGCAGCGGCGCCCCTCGGCCTCACCCTGCCCGTGGAGAAAGCTGCCGCCACCATCCAGAACCAGTTCAGGAAGTACCAGCAGAAGAAGAAGGAGACCAAGTAGAAGCACACCCGCACCACCCGAGCTCtgcaagacagacagacggacacaaacacactggcgggggacacagacagacagacagacagacagacagacagacagacagacagatggacacaaacacactggcgggggacacagacagacagacagacagacagacagacagagacctctCCAAAATGTAAAGAGCAAGAGGACTAAACATTTCCTCTAACTCTGTTACCTGTGTTGCGCAGCGTGTTAAGTAAAACAAAGTAAATAGTACAGACTGACttgacattatatacacacacacacacacacacacacacatacacacacacacacacacacacaaaatgaacgGACTAAATATGACACACATCCCGTCTTATACTATGTAACTGAATATATATGAATAATATGTCCTTTATATGctaatggttagagcattggactagtaaccgaaaggtttcaagttcatatccccgagctgacatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagattttgttcttaactgacttgcctagttaaataaaggtaaaataaaaataaata
>TU2166689
gtgtgtgtgtgtgttttccatctACCTCCTGCAAAGCACACTCCACTGACTGTTTGGATCTATCAGCGTGTACCTGATCTCTCTTCCGCGGCTGGACTGAGGAAATAAGGGAAATAAGCAGTATCACGGCGGGCCTATCCCGTGGCATCACGGAAGAGTTGTCACGATGATAGTTACAATGCTAACTGCCATGTACATGGTGGTCAGGGTAGTTGAAAAGATTGGAGTGCGGTTTGCGCGCAGGGATCCTCCCTTGCCTTTCGTGGTGACCCAGGTTCTGCCCTGGCAGGTGCACCATGTGTCCCAAAAGAGGAGGAGCAGCGCAACAGCAGAGTACGATGGCCCGAGGAGGAACAGCCTAGGAGTGTTCAGAAAGAGTGAGTAATGAGACCAAACGATGTTTAAAAGAGTGAAATGCACACACCTCGAAAACATTTCCCAGGAAATGGATCTGAGAGGAAATCAttcgtgtatatatattttttaattggtaCACTGGTATGCTGCTCACACAGTGTTTTAATGGTTTGACTGGGTCTTCCTCATTGCAACCCAGTTACGGGGTCGAAAAATCATTTTCTCGTCAAAACACTTCGGGAGCAGTAATACGAGTGTGTGGATTTATGTTTTTCTTATCTATAACACCCGGACATTCCGTGGCAATATATCTATATTGATAACAACGTAGTAGAATCGCCTACCCAAAGTAGAGGCTTGCTGAAAGGCTACATTACTTCATAACCCCTAACGTTACAAACCACTTGTGCCTTACTACTTATGTACTTGCTACGTGTGCTACACACAGTAAATTCGGACCTCTTCCCCAATACAACGTTGGCTGTTGCTGTTGCCACTTTGGCTGTGCCCTGTCTCCTGACGTGCAACCGGAAAGACTCCGCCTGCAGCAACGGGTGTGCAGCGGCGCCCCTCGGCCTCACCCTGCCCGTGGAGAAAGCTGCCGCCACCATCCAGAACCAGTTCAGGAAGTACCAGCAGAAGAAGAAGGAGACCAAGTAGAAGCACACCCGCACCACCCGAGCTCtgcaagacagacagacggacacaaacacactggcgggggacacagacagacagacagacagacagacagacagagacctctCCAAAATGTAAAGAGCAAGAGGACTAAACATTTCCTCTAACTCTGTTACCTGTGTTGCGCAGCGTGTTAAGTAAAACAAAGTAAATAGTACAGACTGACttgacattatatacacacacacacacacacacacacacatacacacacacacacacacacacaaaatgaacgGACTAAATATGACACACATCCCGTCTTATACTATGTAACTGAATATATATGAATAATATGTCCTTTATATGctaatggttagagcattggactagtaaccgaaaggtttcaagttcatatccccgagctgacatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagattttgttcttaactgacttgcctagttaaataaaggtaaaataaaaataaata
>TU2166691
gtgtgtgtgtgtgttttccatctACCTCCTGCAAAGCACACTCCACTGACTGTTTGGATCTATCAGCGTGTACCTGATCTCTCTTCCGCGGCTGGACTGAGGAAATAAGGGAAATAAGCAGTATCACGGCGGGCCTATCCCGTGGCATCACGGAAGAGTTGTCACGATGATAGTTACAATGCTAACTGCCATGTACATGGTGGTCAGGGTAGTTGAAAAGATTGGAGTGCGGTTTGCGCGCAGGGATCCTCCCTTGCCTTTCGTGGTGACCCAGGTTCTGCCCTGGCAGGTGCACCATGTGTCCCAAAAGAGGAGGAGCAGCGCAACAGCAGAGTACGATGGCCCGAGGAGGAACAGCCTAGGAGTGTTCAGAAAGAACTCCGCCTGCAGCAACGGGTGTGCAGCGGCGCCCCTCGGCCTCACCCTGCCCGTGGAGAAAGCTGCCGCCACCATCCAGAACCAGTTCAGGAAGTACCAGCAGAAGAAGAAGGAGACCAAGTAGAAGCACACCCGCACCACCCGAGCTCtgcaagacagacagacggacacaaacacactggcgggggacacagacagacagacagacagacagacagacagacagacagacagatggacacaaacacactggcgggggacacagacagacagacagacagacagacagacagagacctctCCAAAATGTAAAGAGCAAGAGGACTAAACATTTCCTCTAACTCTGTTACCTGTGTTGCGCAGCGTGTTAAGTAAAACAAAGTAAATAGTACAGACTGACttgacattatatacacacacacacacacacacacacacatacacacacacacacacacacacaaaatgaacgGACTAAATATGACACACATCCCGTCTTATACTATGTAACTGAATATATATGAATAATATGTCCTTTATATGctaatggttagagcattggactagtaaccgaaaggtttcaagttcatatccccgagctgacatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagattttgttcttaactgacttgcctagttaaataaaggtaaaataaaaataaata
>TU2166694
GCTTCAAGCTGCTGTCTAAGTAGCGTCATCAAATGTCCTAATGGAGTATCCAAAAGAGTTGTCCACGTATGTAATATCTATGGCGCTACGATGCTACATTTCGTTTATCAGGATCCCCATCAGCCATTGCTATGTCAATACTGTCtgataagtttttttttttcgcGTGAGCACGAATATCTTAGACAGCTTTCTCCACAGTGAGGGCTTTTAATTAAGAAATATTGAGGAAGTTGTCCTGATTAGTGTTCTGTACGCGTGAAAAAGAGAGGGAACTGATGGTCAATACTCAACTTGATCTCATCGTTTCACTTTGGGATTTGATGTAATTGGAtgaacacgcacacgcacacacacacacacacacacacacacacacgcacgcacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaatgaacgGACTAAATATGACACACATCCCGTCTTATACTATGTAACTGAATATATATGAATAATATGTCCTTTATATGctaatggttagagcattggactagtaaccgaaaggtttcaagttcatatccccgagctgacatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagattttgttcttaactgacttgcctagttaaataaaggtaaaataaaaataaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961957.1 False 691 mRNA 0.55 4 4336602 4340524
TU2166677 False 1557 lncRNA 0.46 4 4336603 4341404
TU2166688 False 1616 lncRNA 0.46 5 4336603 4341404
TU2166689 False 1545 lncRNA 0.46 4 4336603 4341404
TU2166691 False 1101 TUCP 0.48 6 4336603 4341404
TU2166694 True 748 lncRNA 0.41 2 4336984 4341404

Neighbor

gene id symbol gene type direction distance location
LOC110503491 LOC106612400 coding upstream 58448 4267530 ~ 4278154 (+)
LOC110503492 prkd2 coding upstream 75091 4200946 ~ 4261511 (+)
LOC110503494 strn4 coding upstream 140069 4176229 ~ 4196533 (+)
LOC110503495 slc1a5 coding upstream 166253 4158455 ~ 4170349 (+)
LOC110503300 npas1 coding upstream 307483 3985861 ~ 4029119 (+)
il10r1 il10r1 coding downstream 382115 4722639 ~ 4726930 (+)
tmprss4a LOC106612727 coding downstream 403109 4743633 ~ 4762831 (+)
LOC118944078 NA coding downstream 1043934 5384458 ~ 5387799 (+)
LOC118944106 NA coding downstream 1090935 5431459 ~ 5448034 (+)
zgc:162730 tisb coding downstream 1115237 5455761 ~ 5458351 (+)
G1894030 NA non-coding upstream 2429 4333812 ~ 4334173 (+)
G1893624 NA non-coding upstream 6172 4330063 ~ 4330430 (+)
G1893613 NA non-coding upstream 7518 4310569 ~ 4329084 (+)
G1893581 NA non-coding upstream 92930 4243438 ~ 4243672 (+)
G1893580 NA non-coding upstream 93209 4243171 ~ 4243393 (+)
G1894038 NA non-coding downstream 4339 4344863 ~ 4346369 (+)
G1894037 LOC106612398 non-coding downstream 6348 4346872 ~ 4347190 (+)
G1894040 NA non-coding downstream 9815 4350339 ~ 4350834 (+)
G1894043 NA non-coding downstream 12098 4352622 ~ 4352870 (+)
G1894046 NA non-coding downstream 15971 4356495 ~ 4356699 (+)
G1893604 NA other upstream 46004 4289908 ~ 4290598 (+)
G1892702 NA other upstream 1034012 3270196 ~ 3302590 (+)
sipa1l3 sipa1l3 other upstream 1202879 3075396 ~ 3173993 (+)
fosb fosb other upstream 1375542 2951862 ~ 2961060 (+)
LOC110503556 clasrp other upstream 1516184 2803171 ~ 2820422 (+)
G1894083 LOC106612398 other downstream 104099 4444623 ~ 4444976 (+)
bl1s3 bl1s3 other downstream 1178497 5518991 ~ 5520163 (+)
G1895266 LOC106612719 other downstream 1180891 5521415 ~ 5522865 (+)
G1896894 NA other downstream 2599892 6940416 ~ 6941556 (+)
G1896931 NA other downstream 2677271 7017795 ~ 7018558 (+)

Expression


Co-expression Network