tmprss4a (LOC106612727)


Basic Information

Item Value
gene id tmprss4a
gene name LOC106612727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 4743633 ~ 4762831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961804.1
TGACGACTGTTGAACGAGACTATTGAGACTGTGTTCCCATCTCTGAGCCCATAGTTACTGATCAATAGTGTTGGCATCGGGGGTAGGGGTCTGACCGTTTACTACATACACCTACACCGCTGTGTATAGAGGGGATACCTTCAGGTGGCAAAGAAAAAGCTTCACAGAGAGAGTATGAGTATCGTGCATGACCTGCCTGTTAACTATTTTAACCTTGACGTTCGACAACTTAAAATGTTATGATCCAATTCCGTTTGAAATCTTCCTCAGAGAGCAGTATTTTCCCTGAACTGCTTCCTTATATCCAAAACCTCCAAGCACACAGACAGGAGGTGGTGCGTAACGTGAGAGTGAGAGGACACAACACACTGACCAGAAACGAGTCTgaatatgttgttttttttaaacagagagagagaggtgggatcgCATAAAATGAAGGTTTCTCCCTAGGTAGGCAGGCTTGAGCAACACAAacaatgagagagggaaggaagcagGAAGAGAGAGTAGATTCTGGCATGTAAAAACCTTATATTCAACATTGTAGTCAAAGGGACAGAGGAGGTGTGGAGAAGTGCAAGCATATTCAAAGCCTCACTTCTACCTCTGCAGTCCTACTACAAGGATCCAGGTGGACCCCTAAAGACCACCAGGCACACATCGACTCCAACAACCAGAGACCACCTGATTAGGACCGAGGGTGAAAGACTGACAGTCAATAGTGATCTGGTTAACCTCATactgacACCTGGCTCGCTGAAGAAAGCAATAGACCATTAAATCCTAGACAACAAGttGTAGTGCGGCCTGGTCGGAAAAGAAAAGTCATGACGGCGCCGAACTCCCAGAAAGGGAAGTCCTCGTCGAGGAAGAGGGTCCTGATCACCGTGTTGATGGTACTGGTAGTGCTGGGGATCCTGGTCACGGCTGGATACTTCATCGCACAGCTGATCAACAGTAAGTACTTTTTCTGCTCCCGGTCTGTGAAGTTCATTCCCCTGGACAAAGCGTGTAATGGGATGGCGGACTGTTCAGGAGGAGAGGACGAGCTCACCTGTGTGACCAACATGACGGTCAACACTACCTttccagTGCGTCTGGTCTCTGAGCAGAGTGTTCTCCAGATCTACAGTGCCGGGACAGGATGGAGGAGTGTGTGTAGTGAGGACTGGACCCAGCTACACACAGAGAAAGCCTGTCAACAGCTGGGCTACACCTATAAACCCGTCAGTAGTACCATCTCAGTGAGGAACTTGTCCTCGTCCCTGAAGACAGGACCGTTCTCAGGGGTCAGGGTCGCAGCCGAAACCACGCCCATTTACCAGACTGTCATTGACCGCCAGGTGTGTAACTCAGGATCTGTGATCTCCCTGACCTGCTCCGactgtggaGAGCGGGGGAGATCGGACCGTATCGTGGGGGGTGTGGATGCATCTATAGAAGAGTGGCCGTGGCAGGTGAGCCTGCAGCAGAACGGACAACACACCTGTGGAGGGTCACTGGTGTCACCGCGCTGGGTCGTCACAGCAGCGCATTGCTTCTCTGGtagtAAGAAAGAGCTGAGTCGCTGGCAGGTGGTGTCTGGGAGGACATACATGGGCACCCTGGGAGGCTCATATGTAGACAGGATCATACTGAACGGACAATACAACGCAGCCCGCAACGACTACGACCTGGCCATGATGAGGCTGACCAAACCCATCACTGTAGGAAACTCTCGTCGGCCCGTGTGTTTGCCCCCTAAGAACCTGGGACTGAAGGCAGGAGACACTATGACGGTGACAGGCTGGGGCTACCTGGAGGAGAAGGgTAAAGTGTCTCCTGTCCTCCAGAAGGCTACCCTTCCCCTTATAGACAGCGCTCAGTGCTCCAGTCCCACTGTCTACGGTTCCTCAATCACTTCCAGGATGCTTTGCGCTGGTTACCTGAAGGGCAAAGTGGACGCATGTCAGGGAGACAGTGGTGGTCCTCTTGTGTACCTGTCAGAACAATGGCAGCTGGTGGGGGTGGTGAGCTGGGGGATCGGCTGTGCCAGAGAGGGTCGACCAGGGGTCTACTGTAACGTGGACGATATGCTCAACTGGATCCACACTGTCATGGAGaaaaacccttgaagccTCAAACCATGACCAAGAGGCTCTATCGCGTTGGGCTACCCGAATTTCAGCGGATCTACATAGTGCTCTGTCATGGGAATAGAAGAGGAATCCTCTTCAAAGTGCAATTTTAAAACCCCTACAACAATACATAACTCAaaccaacacgcacacacatgcccGCACACTCAGATAGGCACAAAAGTGCACCGACGCAAACACACTTGCACTCCTTGTTTACTATAGCAGGTTATTCACAGAGTGGCTTGTGCCATTTTTTAGGTATCTCAGGGACCACTGACGTGGCAGTGTAAGACAGACAGTCGGTCTGGGGccgcgtcccaaacggcaccctattgcCTTTTTAAAGTGCACGACTTTTGATCAGAACACTCGGGTGAAAGTGGTGCACTGTCAAGGGAATAGGGGTCCATTTGGGACGAAGCCTGGGCTTTTCACATGGCTGAGCACTTGAGACAGGACTCTCACCAAGTGCCTCTGCCGTCTCTCTTGGTCAACGAGGTGGCGAGAAGACTCTCCATGGGTGAAATGTCTTCATGAAAATATGTGTAGATAAAGTATATGTGCCATGCAGGTGAAAATGTgcatttttaaccaaatgttaaATGAGTATGGGTGCTGTGACGTGACGTGAAGCTCTCTTCATAGTATATGTCAATGGAGGGGTCATTAGTCTCATCGAAATACCGTGCTGTAAATCCCATCATGGATTCACTTGTGCACTTTCAGGTGGTCAGATTCACGGTCTGCCAATAGACTTCCAGTGTGCAATTGGAATAATCCCTACAATATGCACATTTGCAAGGTTCTGATTAATgacgtgttttttttgttgttgttgacattgtGAACATTTCCTTTCTTTGTATAGCTGTACATATTGTATTACGACGCAGACGTTGTTGTCTGTGTAAGATCAGAATGTCTGTATTGCACACGTTGTTGGTATGTTTTATAAAGGGATGCCTGTGTTAAATAAATGATCAGATTGGGATGAACTTTGA
>XM_036961803.1
ATGGACGAGAGATAGGggaacagaaaaagagagagaaagcgccACCAGATCAGTCGAGCTAGTTTGtgtgaggagagagatagaggaagtacacatggagagagaggagggcataAGGTGTCCTATTACAGATAATGGTTTGGTGTTGTTTGGCGAGCATGGGGCTGGGTCACTCACAACAAATCCCTGTGGATTTCAGCAACACGGATACGCACAGGAACACACCGGCAGTCGCTAATACAGCAGCATACTTTTACAGCAGCAGGGCAAGTTAGGCAGCCTGCAGGACAGATCGAGTTTCGCCGCAGGTGAATTGAGGGACAAAGAACAGGGTtttgagagggcgagagagaaagatagaaagagagagacagagagagagagagagagagagagagagagagagagagagagagagagacagagaaggaagcGAGAATAACCATACGGACCGGCACAGAGTTGTGAGAGGTAAAActgtggaggtagagggagaggaggcacaAGACGAAGGGGAAGGGAGACTCTGTCGAAGGGAGTTCTACTCGCTCCAGAGACCGAAGGGCAGTGCATCCTCTGTACCCTGTGACCTGTGAGTCTGGGCCAGCTGAGAGGGGACTTCAGCACCATGAGTactgacACCTGGCTCGCTGAAGAAAGCAATAGACCATTAAATCCTAGACAACAAGttGTAGTGCGGCCTGGTCGGAAAAGAAAAGTCATGACGGCGCCGAACTCCCAGAAAGGGAAGTCCTCGTCGAGGAAGAGGGTCCTGATCACCGTGTTGATGGTACTGGTAGTGCTGGGGATCCTGGTCACGGCTGGATACTTCATCGCACAGCTGATCAACAGTAAGTACTTTTTCTGCTCCCGGTCTGTGAAGTTCATTCCCCTGGACAAAGCGTGTAATGGGATGGCGGACTGTTCAGGAGGAGAGGACGAGCTCACCTGTGTGACCAACATGACGGTCAACACTACCTttccagTGCGTCTGGTCTCTGAGCAGAGTGTTCTCCAGATCTACAGTGCCGGGACAGGATGGAGGAGTGTGTGTAGTGAGGACTGGACCCAGCTACACACAGAGAAAGCCTGTCAACAGCTGGGCTACACCTATAAACCCGTCAGTAGTACCATCTCAGTGAGGAACTTGTCCTCGTCCCTGAAGACAGGACCGTTCTCAGGGGTCAGGGTCGCAGCCGAAACCACGCCCATTTACCAGACTGTCATTGACCGCCAGGTGTGTAACTCAGGATCTGTGATCTCCCTGACCTGCTCCGactgtggaGAGCGGGGGAGATCGGACCGTATCGTGGGGGGTGTGGATGCATCTATAGAAGAGTGGCCGTGGCAGGTGAGCCTGCAGCAGAACGGACAACACACCTGTGGAGGGTCACTGGTGTCACCGCGCTGGGTCGTCACAGCAGCGCATTGCTTCTCTGGtagtAAGAAAGAGCTGAGTCGCTGGCAGGTGGTGTCTGGGAGGACATACATGGGCACCCTGGGAGGCTCATATGTAGACAGGATCATACTGAACGGACAATACAACGCAGCCCGCAACGACTACGACCTGGCCATGATGAGGCTGACCAAACCCATCACTGTAGGAAACTCTCGTCGGCCCGTGTGTTTGCCCCCTAAGAACCTGGGACTGAAGGCAGGAGACACTATGACGGTGACAGGCTGGGGCTACCTGGAGGAGAAGGgTAAAGTGTCTCCTGTCCTCCAGAAGGCTACCCTTCCCCTTATAGACAGCGCTCAGTGCTCCAGTCCCACTGTCTACGGTTCCTCAATCACTTCCAGGATGCTTTGCGCTGGTTACCTGAAGGGCAAAGTGGACGCATGTCAGGGAGACAGTGGTGGTCCTCTTGTGTACCTGTCAGAACAATGGCAGCTGGTGGGGGTGGTGAGCTGGGGGATCGGCTGTGCCAGAGAGGGTCGACCAGGGGTCTACTGTAACGTGGACGATATGCTCAACTGGATCCACACTGTCATGGAGaaaaacccttgaagccTCAAACCATGACCAAGAGGCTCTATCGCGTTGGGCTACCCGAATTTCAGCGGATCTACATAGTGCTCTGTCATGGGAATAGAAGAGGAATCCTCTTCAAAGTGCAATTTTAAAACCCCTACAACAATACATAACTCAaaccaacacgcacacacatgcccGCACACTCAGATAGGCACAAAAGTGCACCGACGCAAACACACTTGCACTCCTTGTTTACTATAGCAGGTTATTCACAGAGTGGCTTGTGCCATTTTTTAGGTATCTCAGGGACCACTGACGTGGCAGTGTAAGACAGACAGTCGGTCTGGGGccgcgtcccaaacggcaccctattgcCTTTTTAAAGTGCACGACTTTTGATCAGAACACTCGGGTGAAAGTGGTGCACTGTCAAGGGAATAGGGGTCCATTTGGGACGAAGCCTGGGCTTTTCACATGGCTGAGCACTTGAGACAGGACTCTCACCAAGTGCCTCTGCCGTCTCTCTTGGTCAACGAGGTGGCGAGAAGACTCTCCATGGGTGAAATGTCTTCATGAAAATATGTGTAGATAAAGTATATGTGCCATGCAGGTGAAAATGTgcatttttaaccaaatgttaaATGAGTATGGGTGCTGTGACGTGACGTGAAGCTCTCTTCATAGTATATGTCAATGGAGGGGTCATTAGTCTCATCGAAATACCGTGCTGTAAATCCCATCATGGATTCACTTGTGCACTTTCAGGTGGTCAGATTCACGGTCTGCCAATAGACTTCCAGTGTGCAATTGGAATAATCCCTACAATATGCACATTTGCAAGGTTCTGATTAATgacgtgttttttttgttgttgttgacattgtGAACATTTCCTTTCTTTGTATAGCTGTACATATTGTATTACGACGCAGACGTTGTTGTCTGTGTAAGATCAGAATGTCTGTATTGCACACGTTGTTGGTATGTTTTATAAAGGGATGCCTGTGTTAAATAAATGATCAGATTGGGATGAACTTTGA

Function

NR:

description
transmembrane protease serine 4-like isoform X1

GO: NA

KEGG:

id description
K09635 TMPRSS4; transmembrane protease serine 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961804.1 False 3124 mRNA 0.49 13 4743633 4762831
XM_036961803.1 True 3015 mRNA 0.51 13 4747600 4762831

Neighbor

gene id symbol gene type direction distance location
il10r1 il10r1 coding upstream 16703 4722639 ~ 4726930 (+)
LOC118944093 NA coding upstream 403109 4336602 ~ 4341404 (+)
LOC110503491 LOC106612400 coding upstream 465479 4267530 ~ 4278154 (+)
LOC110503492 prkd2 coding upstream 482122 4200946 ~ 4261511 (+)
LOC110503494 strn4 coding upstream 547100 4176229 ~ 4196533 (+)
LOC118944078 NA coding downstream 621627 5384458 ~ 5387799 (+)
LOC118944106 NA coding downstream 668628 5431459 ~ 5448034 (+)
zgc:162730 tisb coding downstream 692930 5455761 ~ 5458351 (+)
bl1s3 bl1s3 coding downstream 756160 5518991 ~ 5520163 (+)
LOC110503581 LOC106612717 coding downstream 1111654 5874485 ~ 6033122 (+)
G1894202 NA non-coding upstream 7413 4735475 ~ 4736220 (+)
G1894175 NA non-coding upstream 61942 4679975 ~ 4681691 (+)
G1894166 LOC106612730 non-coding upstream 68000 4671136 ~ 4675633 (+)
G1894119 NA non-coding upstream 157170 4586063 ~ 4586463 (+)
G1894114 NA non-coding upstream 165089 4578199 ~ 4578544 (+)
G1894207 NA non-coding downstream 236 4763067 ~ 4766750 (+)
G1894541 NA non-coding downstream 497000 5259831 ~ 5260518 (+)
G1895178 NA non-coding downstream 611189 5374020 ~ 5374256 (+)
G1895196 NA non-coding downstream 635604 5398435 ~ 5398652 (+)
G1895197 NA non-coding downstream 636653 5399484 ~ 5399705 (+)
G1894083 LOC106612398 other upstream 298657 4444623 ~ 4444976 (+)
G1893604 NA other upstream 453035 4289908 ~ 4290598 (+)
G1892702 NA other upstream 1441043 3270196 ~ 3302590 (+)
sipa1l3 sipa1l3 other upstream 1609910 3075396 ~ 3173993 (+)
G1895266 LOC106612719 other downstream 758584 5521415 ~ 5522865 (+)
G1896894 NA other downstream 2177585 6940416 ~ 6941556 (+)
G1896931 NA other downstream 2254964 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 2554121 7316925 ~ 7350759 (+)

Expression


Co-expression Network