bl1s3 (bl1s3)


Basic Information

Item Value
gene id bl1s3
gene name bl1s3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 5518991 ~ 5520163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160596.2
GGGCCAACCCCCGTGAGTGAGCGATTTCCGGCTACTTCCGTGTGCTCATGTGATTCCTTTTTTACAGGACTGTGGAGGTGGTGTGGTGTAATGGCAAGTGACAAATACCAGATAGTGGTGCAAGGAGAGGCGTCAGAGACCGACTCAGATGATGAGGTATacatcacctccctctctccacattcAACAGCCGGAGGGCAAAAGGTACCAGGGGAAGCATCCGAGACTGACAGCGAGGGGGAGGTTGAGAAAGCACGGAAATGTGTCACTGCTGCAAGCTCTGAAAACCCACAAATATTACGCAAGGACTTAACTCCCCTGCTTGTGATCAGAGACAACTCTGACATTCAGTCCGTGGTAGAGGAGAGGGTTGTTTCTCAGCCCGAACACAGTGGGCTCTACTACAACACTTTACTCCAGCAGAAATTACAGGAGAGCAATGCACGTCTGTGCACGGATGTGTCCCAGACCATCAAACAGGTGTATGGTAATGCCACAAAGGAGATCCGCATGGCCACGACCCACCTGACCGTCTCCCAGAACGGCATCATCAACGCCTCCCACAGCATCCGACTCATTCTGGAGGACCTCAAGTCTGTCTCAGAGAAAATGGACATTATCACCAGCTGTTACCTTCTCCCCGATATtaccatcccctcctctcccactacCCCTATTCCCGGCCAATGATCTTCCTTATGATGTTCCTTGTTAAATGCTTTCATATGTCTTATGTAGGCTAAACAACGGCCTGGAGTATTGTTATTTGTAAAAGGCACTTGCATTAGGTGAATAAATGATGCATGCTGTTATAC
>TU2168012
GCTACTTCCGTGTGCTCATGTGATTCCTTTTTTACAGGACTGTGGAGGTGGTGTGGTGTAATGGCAAGTGACAAATACCAGATAGTGGTGCAAGGAGAGGCGTCAGAGACCGACTCAGATGATGAGGTATacatcacctccctctctccacattcAACAGCCGGAGGGCAAAAGGTACCAGGGGAAGCATCCGAGACTGACAGCGAGGGGGAGGTTGAGAAAGCACGGAAATGTGTCACTGCTGCAAGCTCTGAAAACCCACAAATATTACGCAAGGACTTAACTCCCCTGCTTGTGATCAGAGACAACTCTGACATTCAGTCCGTGGTAGAGGAGAGGGTTGTTTCTCAGCCCGAACACAGTGGGCTCTACTACAACACTTTACTCCAGCAGAAATTACAGGAGAGCAATGCACGTCTGTGCACGGATGTGTCCCAGACCATCAAACAGGTGTATGGTAATGCCACAAAGGAGATCCGCATGGCCACGACCCACCTGACCGTCTCCCAGAACGGCATCATCAACGCCTCCCACAGCATCCGACTCATTCTGGAGGACCTCAAGTCTGTCTCAGAGAAAATGGACATTATCACCAGCTGTTACCTTCTCCCCGATATtaccatcccctcctctcccactacCCCTATTCCCGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160596.2 False 815 mRNA 0.50 2 5518991 5520163
TU2168012 True 654 TUCP 0.52 2 5519021 5520032

Neighbor

gene id symbol gene type direction distance location
zgc:162730 tisb coding upstream 60640 5455761 ~ 5458351 (+)
LOC118944106 NA coding upstream 70957 5431459 ~ 5448034 (+)
LOC118944078 NA coding upstream 131192 5384458 ~ 5387799 (+)
tmprss4a LOC106612727 coding upstream 756160 4743633 ~ 4762831 (+)
il10r1 il10r1 coding upstream 792061 4722639 ~ 4726930 (+)
LOC110503581 LOC106612717 coding downstream 354322 5874485 ~ 6033122 (+)
LOC110503583 LOC106612716 coding downstream 553424 6073587 ~ 6076625 (+)
LOC110503584 NA coding downstream 622240 6142403 ~ 6143853 (+)
LOC118944026 NA coding downstream 636677 6156840 ~ 6169793 (+)
LOC110503587 LOC106612711 coding downstream 765555 6285718 ~ 6356497 (+)
G1895226 NA non-coding upstream 69789 5448965 ~ 5449202 (+)
G1895213 NA non-coding upstream 98564 5419766 ~ 5420427 (+)
G1895204 NA non-coding upstream 109999 5408768 ~ 5408992 (+)
G1895197 NA non-coding upstream 119286 5399484 ~ 5399705 (+)
G1895196 NA non-coding upstream 120339 5398435 ~ 5398652 (+)
G1895268 NA non-coding downstream 4692 5524855 ~ 5525161 (+)
G1895270 NA non-coding downstream 6718 5526881 ~ 5527106 (+)
G1895292 NA non-coding downstream 41131 5561294 ~ 5561579 (+)
G1895294 NA non-coding downstream 42023 5562186 ~ 5562508 (+)
G1895526 NA non-coding downstream 112115 5632278 ~ 5632826 (+)
G1894083 LOC106612398 other upstream 1074015 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 1177587 4336602 ~ 4341404 (+)
G1893604 NA other upstream 1228393 4289908 ~ 4290598 (+)
G1892702 NA other upstream 2216401 3270196 ~ 3302590 (+)
sipa1l3 sipa1l3 other upstream 2385268 3075396 ~ 3173993 (+)
G1895266 LOC106612719 other downstream 1252 5521415 ~ 5522865 (+)
G1896894 NA other downstream 1420253 6940416 ~ 6941556 (+)
G1896931 NA other downstream 1497632 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 1796789 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 2556043 8076117 ~ 8080686 (+)

Expression


Co-expression Network