LOC110503579 (LOC106612719)


Basic Information

Item Value
gene id LOC110503579
gene name LOC106612719
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 5520441 ~ 5525760 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581983.2
ATCACAATGTACATTCTATATTTGACTCACAGAGTCCATAGTGGTCTACAGCCGACAGACATACTGAATTCTGTATCATGATGGAGTTACGAGTCTATGGATTGGGGTACTGGGATTGTGTTCTTGCTTTCATTGGGAAAACACACAGAAGGAGATCATACTTTCTGTAATAGGTGGGGTTGGTACCGGGTAGCTCTCACTCGGGAAGCCAAAGTCCATTAGACCAAGAGGGAACCCCCGTGGGCAGAGCAATTGGTCTCTGGCAGAGCTATCAAGCGTGACATTTCCATGCATGGTTGACAAGGATAGTGTGCAGATGTCAAAGCTATTTGAAGCTTTGCCAGAGTGTGGATATAATAAGGAAGGACATGAGGATCAGAGAGAGCAAAGCAAAGAAGACCAGTCGACGTCTAGCATTCGTGAAGCACTCCTGTCCCGTTACCTAAGGCCAAGAATCGTATAGATGTATGGTAATTGTTATGAATATTAATGCGTGGGGATGGAGTCATTAATATACCTATTATAAACTTACACATATTGTAATTTCCTTTGTTTAGAATTGTTTAGAATTAAACATTGCTTTATGGGCCATGGCCATTGTAGTAAGACTCAAAACTCAAAGTCATCTGGAAAATTCCACACAATTCTGACTTTCATTCACATATGATCTGATAATGTGTCGGGTATATAGTATGGTAGGTTAAACAGCACTAGTGTTATTGGTTTCTACAGAGGGTCAGTCTGTATGTTGACTTCAATGTAGTGAGACCCACACAGACACGGTAAGACTGAGCTGTACTTTCTTTTGAGGGCAAATGTCTAATCCAATGTTAATACGTAGATATGGAGGTAATGTTTTGTAAAACTAGCTGATAGGTTATACTCAATAGAAAGGTCATTGGAAAGTGCTGTCTGGTTTTATTCATTAACCAAATATTGACATTTTATTTGTACTTCTGTTCCAAGACTAAGGCAAAGACAACAAGCAGGTTGATTTGTGTGGGAGGGTGTGTTAACTTTCAttaaagtaaaaatctgtcattataTAACTGGTAGTATTTGAGGCAATTATTGTTGCGCAAACTCATGCTCTAAGTTATCGATACAACCAAAGGTTAATTTATGGAGCAGCCAAGTTCTTCAGCTTACTGACATGATTGAATAGAACTTTTGGCTAACCCTGAATGTGCTCATTGAACTGCTGTACAACACAAAATATTTATTGAAAAGCTGTCTTAAATGTTGACTTCAATGTAGTGAGACCCACACAGACACGAATTTACAAAGTATTGGAACCATAGACAAATGGATGGACAAGGTGCCCTGTTGGATGATGCCTAGGCATATGGACTGTCCAGGGCATTATTCAAGGTGGCACCTCCGGGCCATCGTAGGTCTGTTCTCCCAGTGCCCCAGCCGCACTGAAACTCTACTGAAGAAGATCAAGATTTACATGAACAGAGAGGCAGAGTGGAGAGACCAGAAGCACAAGCTGAAGAGACCTCCTCCAGAGTGGATTAGCTATTtggccctcctcctctccatcagcTTCTTCCGTCCCgtgtgggagggaggaagaggagcgcTTCAGTGCCTGACACTTTGCAGGCAGTGATAAACTCTGGGCTGGGTTGGCGATCCGCCTCTTCAAGGGCATCCAGGATGCCTTTGGGGAACTTCCCCTGGGCCTCTATAGAGTCACCCAGCATCCCTACCCAAAGAAAGTCACGAGCAAAGGTGATGAGGTCAATTGGAAAGCCATAAAGAtgctctgcctccccctctggGTTGTAGTCCTAGCCACTGTAATTTCCAGCATTGGCACATGTACCCTGCTCTACTTTTATGGCTTTGAGCTCCAAACAAATGGCACACGCAGTTGGGTCAATGTGCTGGAATCGATGGCCATAGCAACACTGGGGCCTCCCGCAGTCTTCGCCCTGAGGACTATTCTGCAGACATCTAAGCACCTGCTCTACACCATGGGCAGCAGCATCCAGCACCAGATGAACAGCTCGGCCATCAGCGACCAGATGGGCTTCATGAACAAGGTGAGGAAGGAGGTGGGCTTCATGGTGGAAATCACCCACTTCATGGAGGTGTTCGAGGGGAGGAGGATCCGTGTGGTGCTGGAGATCACCCACCTGGACCGCTGCGGCCCAGACAGGGTGGTCAGCACCTTGGCGGGGGAGAATGTCCCGTTTGTGTCCATCCTAGCTGTGGACCCCGGAGTGGTGGTGGGCTGTGTGGAGAGCACCATGTGGATCTGTGGGCTGACATCCAGCGGGTACGACTTTGTAAGCAAGATGGTCACCCTGCCCTTCTCAGTGCCTGAGATGTCCCCAGACTCCAAATGCAGAGCTTTTAAAACCCTCGCTGACAGCTATCTAGAGCCTAACTGGGAATGTTTTAAGAGAGGAAAACATAGAGCTGGGAATTTCTCTGCATTTGAAAAAGGCAGGCTTGATGACAGCCTTGTGCCCTTCATTGGAAAGGGCAAAAGTGAGACTGAGCTACTAGAAAATGGCATCCATTGGGAAATCTGGGCCATTAAAATCAAAGCGCTAACAAATGAGGCATTACACGCCATATATACCAAATACAGCCCTCATGTTTATCTTATGGGAAACCATGGGCATATGAGAAGGATAATAAACTCTGTAAGGTTGACAGTCATCGTCATGGATGCTATGAATTACAGGGGCTTCTCCAAAGCTAAAGACCTTGCTGCCTGGGTGGTGATGGCCAACCTCTGGCCCTGCCGCCTGGGCTGGATCCTGCAATGCTCAGAGGACCGCCAGCAGAGGGCTGACACTGATGGCACTGATGGTGACATCAACCAATACTGTGATCAACCAGGCCAAGACCTTGTTCAGTGAGACCAGTCTGGAGCTCCACATGCTCAGAGATCGTCTGGAGACCGTTCTAGAGCAGGATGGAGACCCCGAGCTGTTTGAGAGGTTCCTGAAGAGGGGTAGTCCCATGCATGCCATCGCCAATGATGGAACTTCCCACACACCAGAATATTTTCCCATGAACCACCGTTGGCCCATTAGAACAAGTAAATGACGACCAACAACGTCTAATGACACCATTTAACAATATATGTCAATGTGTCTCAATGTCATGTCTGCATTGTTCTCTATATGGAGAAGCTGAACATTCCAGTGAAATATCAGCAGCTGCGGACAGAGAATCAACTCGAAGGAGCGTCTCTGGTGTATGGGCGCAGCAGTGAGATCAGACATGCCCTTCAGATGACCTTGGGAGAATGGATTACTTTCAGCTCACACTTCCTGGAAGCCAAGCCAGATGTTCAACCTCACGCGACATGACAGTGACTGCAAAAGCATTGACTGATCAAACCCTCTGGATTCAAAATGATCTTTCATTTTATAACATTTTTTATATCTTTGGGAAGACTACACTGTATAGGGATGGAATGCATCTTAAAAGTTTTGAAACTGTTCAACGTTCCCTGAAGTAGAAGCCTATTGCAGTTCAATGACTGACTTGTGAATACAGCAATGCACAATGAA

Function

NR:

description
LOW QUALITY PROTEIN: NTPase KAP family P-loop domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581983.2 True 3539 mRNA 0.46 4 5520441 5525760

Neighbor

gene id symbol gene type direction distance location
LOC110503580 LOC106612720 coding downstream 1669 5514730 ~ 5518772 (-)
LOC110503446 LOC106605018 coding downstream 8404 5511049 ~ 5512037 (-)
LOC110503578 NA coding downstream 10049 5503177 ~ 5510392 (-)
LOC110503577 LOC106612723 coding downstream 26011 5490835 ~ 5494430 (-)
LOC110503574 LOC106612724 coding downstream 416894 4981737 ~ 5103547 (-)
LOC110503586 LOC100380764 coding upstream 622429 6148189 ~ 6157661 (-)
LOC110503585 LOC106612713 coding upstream 633951 6159711 ~ 6175088 (-)
LOC118944082 NA coding upstream 656650 6181377 ~ 6231808 (-)
LOC118944097 NA coding upstream 743158 6264040 ~ 6317522 (-)
LOC110503590 LOC106612705 coding upstream 846310 6371958 ~ 6472758 (-)
G1895416 NA non-coding downstream 53446 5466778 ~ 5466995 (-)
G1895415 NA non-coding downstream 54149 5465955 ~ 5466292 (-)
G1895411 NA non-coding downstream 59712 5460471 ~ 5460729 (-)
G1895409 NA non-coding downstream 60561 5459680 ~ 5459880 (-)
G1895442 NA non-coding upstream 380 5526140 ~ 5526362 (-)
G1895450 NA non-coding upstream 12249 5538009 ~ 5538246 (-)
G1895502 NA non-coding upstream 88327 5614087 ~ 5614288 (-)
G1895527 NA non-coding upstream 106826 5632586 ~ 5632978 (-)
G1895570 NA non-coding upstream 140642 5666402 ~ 5666758 (-)
G1894611 NA other downstream 1166505 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 1225963 4289886 ~ 4294714 (-)
egln2 egln2 other downstream 1444866 4053778 ~ 4075685 (-)
G1893790 LOC106612372 other downstream 1605593 3881288 ~ 3914848 (-)
G1892888 NA other downstream 2501000 3013455 ~ 3019441 (-)
G1896030 NA other upstream 343136 5868896 ~ 5869218 (-)
G1899875 NA other upstream 2521019 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 4045111 9570867 ~ 9579939 (-)

Expression


Co-expression Network