LOC110503583 (LOC106612716)


Basic Information

Item Value
gene id LOC110503583
gene name LOC106612716
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6073587 ~ 6076625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581987.2
TCCAACAGATGCCTGAGAAACTTCAGAAGCGCTTGATTAGAGCGTCTTCCTGCACCAACACAGAACACactctactgtgaagtgggataACCTGCCAGAGGCATAAGCACAATGCCGTCCGACTTCCTAACGCCGTTTTTGGAACTGGAGGATGAGTTCTGCAAGAATTTCCGTGGTCTGGACATGCCAGATGGCGCACCAGCCACCACGCAGATGCAGCGCATTGTGGGATTTCAGCGCAGACACTCACTATGCCCGGTCACCCTGCCCAACTCAAAGTTTAACAGCAGCATTGTGGACCCAATCGGCGAGCCAGCCTGCTGGGCCCTTACTAACACTGCTAACCAGCAGTGGAGCCTGAAACATCAGCAACAGTTGCCCCGCTCCTCTCTCAACAGCATCCCATTCCGTGTAGACCGTTCGATCAGTATGATAGAGGGCCATGTTGGCAGCTTCGGGTCCAGCGAGCAGCAGctccccaccacccctcctctgATGCCCCCACCCGGTCTAAGTATCAGCACATGCTCCCTGTCATCTCCAAAGTCCCtcgccccctcccctcccatctccaccCGGTACAAAACCGAAATGTGCCGCACTTACGAGGAGAGTGGCACCTGCAAATACGGAGCCAAGTGTCAGTTTGCCCACGGCATGGATGAGCAGCGTGGCTTGAGCAGGCACCCAAAGTACAAAACCGAGCCATGCCGCACGTTCCACACCATTGGCTTTTGCCCCTACGGCGCGCGATGTCACTTCATCCATAACGCGGACGAGCAGCTCGGGCCCGATGGAGGAACGCCACCTCAGCGACTAAAGATAAGAGAACGCCCACAGCTGCTGCGTCACAGCATCAGTTTCGCTGGTTTCTCCTCTCCCCAAGCACTGACCGGATTCCATCCCGTTCCAGAGCCCATGCTGTTCTCTAGGGCTTCCTCGGTATCATCCCCGCCCCCCACAGGTAGTCCAGAACTGCTGTCCCCATTGTTTCCAGAACTTGCTACACTGAAGCACAACTATCCGTTCTCGTCTGACTGCGGAAACGACCAGATTAATAACAACCCTCACTTTTATGCTATCACTGACTCTAAGTGCCAAACTGTCTGTGCGCAAAAGTCAGCCGCACAGAACTCTCACCGCAATGCCTTCTCATTTACCGGACTGCCTGCTCTGCAGCGGTGTGCTTCACCTGACTCTCTCTCCGACCAGGAAGGCTACACCAGCTCCAGTAGCATGAGTGGTTGTGAGTCCCCTGGACTTGAGGGCAGACGTCTCCCCATCTTTAGCCGCCTCTCTGTCTCAGATGACTGACCCATCTGACTGCATATTACTGTCTCATCATAGCAGGAGTTCTGCCCAATGTTTTAAAGCTATAGCCGACATATTTAAAACAATATATCATAACGTCCATGTATACTGTTGTATACCCGTATTAGCTACTATGGGTGGCTCAACTAGCTTTACAGTATCCGTGATGTCTTTGCTGAGAGTTCTGTTGAGGAATTTTCTGTACCCATTTCGGGAAAACAAAAGCATGCAGGTAATGATCATTTTGGGCTCGGTATAGGGACAAAACTATTGTCTACACGTGTGCTTTTTACAACTTCAATGGTTCTTCTTATAGCCTTGCCCTTTTAGTGTGTAACCAAAGCTGAACATAGTACCTTGTCTTGTAGGCAGAGTAAATGTTGAAATGTATCCCAAAATGTAGCTAGGCCTACCGTAAATAAAATGTAGCCTTTAGTAAAGGCGACTAATTGACAGTGTTATCAAGTATTCTAACCATAGGGCTTTTTGgagatgtatttattttgtatGTTTTGCAGAGTTTGTTTACGATTGTGTTATGCATTTGTATATGATGCAGAAGAATATGCTTCACTCTTCGCTTTGTTTGAGCTATCATGTAGCTTTAGAACTTTGAATTGCTTGAGTGTAGACACTGCCAGGACCATGTCCACCAGCATCTCCTTATGCCAGTGAAAGCAATACTTGTGTTACAAGCTACCTTGTTCAATCAGTAAATACACGTATTGCCCTCACCGGGCATAAAAAGTCACGTGTTCTTACCCAACAAGTGCATTTCAGCGTTTAGTCTGGGTTCAACGTTTCAACATTCAAGTTCAAGCTCCTGATACATTCATCCAGTTTTGCTTACTCGGCGAGACAAGATTCTCATACACAATTGTGTGACTTGTTTATATCCTATTATAAACATGATTTGTGGCGTTACATGCTAATAACGTAGGCAAGCAATGTTGCCACAGCGACAATGTATGAGTAATATGCGTTACGTCAACATGTTGGCCTCTTGCACACTAACTGTTATTAGACAAAGTGGCATTAATTACTATTTGTATTTTATCTTACAAGGAACGTGTCTTTTGTGCGccaatagtgttttttttttgtagctCATTTGCCGCGAGAAAGGACTGTGATTGTCTTTACTATTAGCCTTAAATGTGATGGAAAAACAAACAAGGCTTTGCATTTGTTAAATTAAaacttatttattttgtttttcagAGCAAAAATGATACTTTCGGTTTTGTTGGTTTCTATATAATTTAAGTGTATTGTTTACATTCTATGGGATATGaatccctgtctctatcttaatatatttttacctgtttggTTCAAAATAAAACTCTGTTGGAAAT

Function

NR:

description
mRNA decay activator protein ZFP36L2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581987.2 True 2669 mRNA 0.46 2 6073587 6076625

Neighbor

gene id symbol gene type direction distance location
LOC110503581 LOC106612717 coding upstream 40465 5874485 ~ 6033122 (+)
bl1s3 bl1s3 coding upstream 553424 5518991 ~ 5520163 (+)
zgc:162730 tisb coding upstream 615236 5455761 ~ 5458351 (+)
LOC118944106 NA coding upstream 625553 5431459 ~ 5448034 (+)
LOC118944078 NA coding upstream 685788 5384458 ~ 5387799 (+)
LOC110503584 NA coding downstream 65778 6142403 ~ 6143853 (+)
LOC118944026 NA coding downstream 80215 6156840 ~ 6169793 (+)
LOC110503587 LOC106612711 coding downstream 209093 6285718 ~ 6356497 (+)
LOC110503588 LOC106612710 coding downstream 286432 6363057 ~ 6369858 (+)
LOC110503591 LOC106612705 coding downstream 381185 6457810 ~ 6460870 (+)
G1896003 NA non-coding upstream 9605 6063747 ~ 6063982 (+)
G1895996 NA non-coding upstream 16050 6056644 ~ 6057537 (+)
G1895853 NA non-coding upstream 129849 5869715 ~ 5943738 (+)
G1895806 NA non-coding upstream 249742 5823638 ~ 5823845 (+)
G1896397 NA non-coding downstream 280646 6357271 ~ 6357486 (+)
G1896364 NA non-coding downstream 293514 6370139 ~ 6370333 (+)
G1896363 NA non-coding downstream 295320 6371945 ~ 6374057 (+)
G1896402 LOC106612709 non-coding downstream 299200 6375825 ~ 6376095 (+)
G1896403 shkbp1 non-coding downstream 299653 6376278 ~ 6377223 (+)
G1895266 LOC106612719 other upstream 550722 5521415 ~ 5522865 (+)
G1894083 LOC106612398 other upstream 1628611 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 1732183 4336602 ~ 4341404 (+)
G1893604 NA other upstream 1782989 4289908 ~ 4290598 (+)
G1896894 NA other downstream 863791 6940416 ~ 6941556 (+)
G1896931 NA other downstream 941170 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 1240327 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 1999581 8076117 ~ 8080686 (+)
G1898300 NA other downstream 3280426 9357051 ~ 9359164 (+)

Expression


Co-expression Network