LOC110503585 (LOC106612713)



Basic Information


Item Value
gene id LOC110503585
gene name LOC106612713
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6159711 ~ 6175088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021581988.2
gagagcgagggagagtaaggggaggagggagcagagggagggggcAAAGGGAGGGATGGGAATAGGATCTGAGTGGAGAGTGGAAGCAGCGTGGCTGGCCGGGGCTGACTGCTGAATGAAAGGGCCTGTTGCTCTCCACCACCGTTCGTTTTTTTGTCCCACAAAAGAGCACATGTCCAGAGCAAACATAGGAAGGCTCTCCAACAGTCAAGCACCAGGGGGAAGGGACAGAATCACCACTATACACAGACCTTTTGGAATTCTGCCTCACTCCATTACTTAGCCCTACAGGTGGCAGGGTGAACTACCATTGCTATGAGCGGGGTAAGTGTAAAGGGAGTTGAGCTGATGTCCCGGTGGCTGTTGGTCCTACTGGTCCTACTCGCACCCCGACATGGGAACACACACCCCCAGTGCTTGGATTACAAGCCCCCCTTCCAGCCACGGGAGCCTCTGGTCTTCTGTAAGGAGTATGCCAAGTTTGGTTGCTGTGACCTGGAGAAAGATGACAAGATCTCCCAGAACTTCTACAAGATCATGGACTACTTTGACTACTTGGGTTACGTGACCTGTGCGAAATACATACGCACCATCCTCTGTCAGGAGTGCTCTCCCTACTCTGCCCACCTGTATGATGCTGAGGATGCCAACACGCCCATGAGGGAGCTGCCAGGCCTGTGCGGAGACTACTGCTCTGAGTTCTGGCACCAGTGCCGCTACACCATTAGCCTGCTCACCGATAACAACGCCACGGTGGGCATAGAGGAGGACCGCAATAAGTTCTGTAACTTCCTGGAACTCAAAGACAGGGAGTACTGCTACCCCAACGTGCTCTCCGACGACAAGCTCAATGCCAACCTGGGAGATGTTCGGGCGGACCCCGAGGGCTGTCTGCAGCTGTGTCTGCAGGAGGTGGCCAACGGCCTGAGGAACCCAGTGGCAATGGTCCATGCCGACGACGGGACCCACCGCTTCTTTGTGGCCGAGCAGCTGGGCTACGTGTGGGCGTACCTGGCCAACGGCTCCCGTATTGACCGGCCCTTCCTCAACCTGACCAAAGCAGTGCTCACCTCGCCCTGGGCGGGGGATGAGAGAGGCTTCCTCTGCATGGCCCTCCACCCGCGCTTTACTGTGGTGCGGAAGGCATATGTCTACTACTCTGTGTCTgtgaagaaggaggagaggatcCGCATTAGTGAGTTTACACTGTCCGCTGATGATATGAACCAACTAGACCACTCCTCAGAGAGAACTATTTTGGAAGTGGTGGAACCTGCCTCGAACCACAACGGGGGCCAACTTCTCTTCGGGCACGATGGCTACCTCTATATCTTCATCGGTGATGGCGGAAGAGCAGGGGACCCCTTTGGCAAGTTTGGGAACTCCCAGAATAAGTCCACTCTGTTGGGCAAGGTGCTGCGTCTCGATGTGGACAACAACGATGACATGGACCCCTACAGTATCCCGTCAGACAATCCTTTCCTGGGGGAGAAGGACTCGCTGCCTGAGATCTATGCCTACGGGGTGCGTAACATGTGGCGCTGCTCCATCGACCGGGGCGACCCCATCACCGGGCAGGGCCGTGGCCGACTGTTCTGCGGGGACGTGGGGCAGAACAAGTTTGAAGAGGTGGACCTCATCGTCAAGGGTGGCAACTACGGCTGGAGAGCCAAGGAGGGCTTCTCCTGCTATGACAACAGGCTGTGTCGCAACTCCTCTCTTGATGACATTCTACCTATTTTCGCTTACCCCCACAAACTGGGGAAGTCGGTCACTGGAGGCTACATATATCGAGGCTGCCAGATGCCTAATCTCAATGGCCTCTACATATTCGGGGATTTTatgagtggGCGCCTAATGTCACTGAAGGAGAACCAAAGCACTGGGAAGTGGGAGTACAAGGAGATATGTATGGGAAAAGGCCAGACGTGCCGATTCCCCAAACTCATCAACAGCTATTACAAATACATAATCTCCTTTGCTGAAGATGAGGCAGGGGAGCTGTACTTCCTGGCAACGGGAGCTCCCAGTGCGTCTGCCAGAGCGGGGGTGATCTATAAGATAGTAGATCCATCCAGGAGAGCACCCCCAGGCAAGTGCAGCTTCAAGCCCACTCTTGTCAAGATTAAGGGCAAGCTGATTCACTTCCACCCGACGGAGGAGTTTGTCATTGACAAGAAGCCGATGACCACTGCTGTGCCCACTACTACGGCTAGAACAACAGCTACTACCACTCTCCGTACTCCTCCGACCACCATGCGTTCTACGACGACAAGACCTACCTACAGACCGCCAACTGCAACCCTGAAGGCTACCGCTAAACCTGCAACGACGCGGGCTACAGTTAAACCTTCAACGATGAGGGCTACTATTAAACCTGCAACGACGCGGGCTACAGTTAAACCTTCAACGATGAGGGCTACTATTAAACCTCTGACGACGCGGGCTACTGTTAAACCTGCAGCAACAACTTCCAACCCCACCTCAATGCAGCAGAGGCCGACTGGTACCGCTACACCTGCCCTGACCACCTCATGGAGGCAGGTAGTGACGGCCAGGCCAGGTCATGCCACCACTCTTTCCCGGCAGAGAATGTCGTTGTCCTACACCAGGCCCACTGTTACCCCGAAGCCCCGACCACGGTTGACAACTGGAGCCAGAAGGCCCTCTCCACCAACAGCACGACCCTTGACCCGACCACAACCACACGACATGGTCAGACCCCCACCACTAGGGGATACGACCAACCGGCCCCAGACCACACCAAGGCCCATGTACTGTACAGCTTCAACAAAGCCCACCACCCAGAGGCCTAACTTCACCCTCTCAAAGGTCCAGGACAAGCTCCTGAAAGGCCAGAGTGACAAGATAGACCGTTCCACAAGGAACCGGTTCAACAAGAAGGACCGGGGCTCCCAACCTGGGAAGCAGCGGCGCCGGAAGCACCGGGCTGGGTCTGTGAGGCTGATCAGTGCAGAGCAGCTATCGGACCGTGGGCGGGTGGAGATTTACATACGGGGGGAGTGGGGTACAGTGTGTGATGACTTGTTTAGTAGTAAAGCGGCCACGGTGGTGTGCCAGCAACTAGGATTCCCTGTAGCCCTGCGTGTGGCTAAACGGGCGGAATTGGGGGGCGGCAGTGGCAGTATCCTGCTAGATGATGTGGAGTGTGAAGGCACAGAGAGGACGTTACTGGACTGCAAACGGGCAAAGGTGGGCAAGCACAATTGTGCACACGATGAGGATGTTGGGGTGGTGTGTGGCTACCACCACGACGAGGATAAATAATGAGCCAAAATACGTCTGACTGGgggatcattgctactctcctGTGCATGAACAGAATCTTCCTCTATGCACTGTACTTCAGGGCACAAACTGTGGTCAGACACATCTCACCCTTCTACTCCTCcaaacatactcacacacactgcgAATTCAAGATGATTAACAACAATTGTTGATTGTAGACTAGACATCCTGATACTTTACTTCAGAGGCAGAATCCCTTTCCTTCCTTGCCTCTCTACCAGAAAAAAGTGTATCACTTTACAATACTGTCCTCTGCTGGAAGAAATGGCATATATTTTGTTGAATTtataattttttacattgtatGAATTGAtaattacatatatatatatatatatatatgttttatttttcataaaacaAAATTCTACATGTGAAGAAGTGAtgtcaaaataataattataataatgataatgaaaAGGAAAATGCTGGACATTGTGTGCTTTATTATTGTAAAATTTGACTGATTATATACAGCATGTAAACTGTTTAAGGCCATTGAGACGAATAAATTGAGATTTCATT

Function


NR:

description
HHIP-like protein 1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021581988.2 True 3837 mRNA 0.53 9 6159711 6175088

Neighbor


gene id symbol gene type direction distance location
LOC110503586 LOC100380764 coding downstream 2050 6148189 ~ 6157661 (-)
LOC110503579 LOC106612719 coding downstream 633951 5520441 ~ 5525760 (-)
LOC110503580 LOC106612720 coding downstream 640939 5514730 ~ 5518772 (-)
LOC110503446 LOC106605018 coding downstream 647674 5511049 ~ 5512037 (-)
LOC110503578 NA coding downstream 649319 5503177 ~ 5510392 (-)
LOC118944082 NA coding upstream 7322 6181377 ~ 6231808 (-)
LOC118944097 NA coding upstream 93830 6264040 ~ 6317522 (-)
LOC110503590 LOC106612705 coding upstream 196982 6371958 ~ 6472758 (-)
LOC110503306 LOC106612708 coding upstream 210197 6385285 ~ 6456532 (-)
LOC110503593 LOC106612703 coding upstream 292517 6467605 ~ 6475962 (-)
G1896213 NA non-coding downstream 50584 6108920 ~ 6109127 (-)
G1896182 LOC106612716 non-coding downstream 83226 6074145 ~ 6076485 (-)
G1896162 NA non-coding downstream 111080 6045593 ~ 6048631 (-)
G1896038 NA non-coding downstream 193547 5874613 ~ 5966164 (-)
G1896031 NA non-coding downstream 290007 5869453 ~ 5869704 (-)
G1896296 NA non-coding upstream 1180 6176268 ~ 6176480 (-)
G1896637 LOC106612710 non-coding upstream 186609 6361697 ~ 6364102 (-)
G1896030 NA other downstream 290493 5868896 ~ 5869218 (-)
G1894611 NA other downstream 1805775 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 1865233 4289886 ~ 4294714 (-)
egln2 egln2 other downstream 2084136 4053778 ~ 4075685 (-)
G1893790 LOC106612372 other downstream 2244863 3881288 ~ 3914848 (-)
G1899875 NA other upstream 1871691 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 3395783 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 3830284 10005372 ~ 10012354 (-)

Expression



Co-expression Network