LOC118944097


Basic Information

Item Value
gene id LOC118944097
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6264040 ~ 6317522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039405.1
TTCCGTCACATCCCCACAGAGTCACACATGGAGAGGGGTGCtgctgcctgtctctctaccttcaGAGGCACCAGAGTGCATGACTCAGACCGTGTTGCTTTAGGAGAATGATTCTTGTTGTCAAGTTGTTTTCTGAGGGATATGCGAACGAGAGTATACCTGGGCCAGCACAACATTTGAATGCTCCATCATAATAGCCTACATGCGTAGGGTGCGCGTCAATATGACATTACTTGACCTTACAGCCATGACAGCCTGCATATATTATGTAACATCTCCGGAGTCCGTTCCTAAACAACTAAAGTATAGCACGCGGAATGCTTTAAAACAGCCCATCCCTCACCGGTCATCCCTCGTTCCTTTCTCTCACTTTTTACTCATCTGAATTGTCTTCAGCAGGCTGGCTGTGATGAAGCAGGGGTCTCCACAGAGGCAGATGCTTAGCAACCACCTGCTGCTTGATTATGGGTTAAGTCAGACCCAAGGATATCCGGCAATGGGAGAAAGAGGCATAGCATCCTGTGGGGGTGGGGCTTACTGATGGTAAACATGGTCCCCCACGGCCGGCATGTCTGCCACGCCCACACCGAGGACCCTGGGGACGACCGAGAGGAGCGCATCCTGGCCGTGCTCGGGATCATCGGGACCGTGCTCAACCTGCTGGTGGTCATCTTCGTCTATATATACACCACCATCTGACCACTACCACCGCAACGATCCCACCAGTACTGGACCACGGTCCAGGCTGACACGTCACCAAGGGAGAGGGGAACGCAGCGCAGAAAATGGAGGTGGACCAAGAAGGAGTAGGACCAAGCCCGTCAAAACCACCAGTGTTATCGAGCTttgacccccaaaaaatctaaGCCGTGCCTGACCATATCGCCATCCTTTCCATCTTTAGGCCCGGGAGGGTGAGGAAGAGCAGGTTTATTCATGAAAATGGCCATTTTGATATCAGATACATGGGAAACCTCTACCATTTCGTACGATGACAAGGCTATTGTTTTGTACAGACTCTCTCACATGCATTATTTGTAGATGTTTAGATAAATTCGCCCTGTTTGATTATTCATTCGACACATATTTACCTAACGATTCTTTTTTGTTGGCCTTTTTGTTCTGAATTCACACTTTATTGTTCGCTAGGGTTAACCTTTGTCAAGAAGCACAAAGACTCTGCCCGTTGAGGAAGTGATGGAGAATTTTATCTTGGTCAAAAAGGCATTGTCACCTGGACCACATTCCAACGCTGAAGGATATGACATTCACCCTCACATAGTGAAAATGAGAGGCCGTTCACTGAGACCCCAATATCACTGCACTGTACGAAGAGCAGGCCTCAATATTCATTTCATCCTCAATATACTCTTTTCTACTAGCAAACCTGAGACGATGTGATACCAAGAGAATATCCTTGGAGCTCTTGTTTCAAGAAAACTCCTGTTTCCACACATTTTATCTTGTGATTTATAAGTGTTAACTACAATAACAAAAGAGACCGATAAGAGTCAAAACTCATTTGTATCATTATTATCAATTGACGCTCATTATATTTCCCCACATTCATGTATGATACACAttcacataccccccccccccttcccccccatTCCCGCTGTAGCCAACATGCCATTTTCAACTGAAAAGCTGAATATGGCTTGTCACTGCACCAGTTGAAGCAAAATATTGGGTTTCCATTTATAATCGATGTCCGAGTATTTAACCGGTAGGGTGTCAGATGTGGCTTTGAGATACTGCTGTGACATGTAGCACGTGCATTACCTGTTCACCTCCAAGAGTTTCACTCACACACGGGTACAGCACGTGTTGTTTTTGCCCCAATTGCCAACCTTGCTGCGAAACCACATCTCAAGTCAATCTCCAGTGCTTCCAGAAGAGTTCATTACTTGAACAAGAACACAGACCCACACTCCTCACCTTGAAAAAACACTTGCCTTACTGATGTCATTGAAGAGACACTTTGGTAGCTGTGATGGAAATGCTTCCtgatgcttttttattttttaacacaATCTCTTA
>TU2169345
acgtaataaaatgtggaaaaagacaaggggtctgaatactttccgaatgcactgcaccttgttacgacttttacttcctctagatagtcaagtttgatcatCTTCTCGGCACTGTATGCCAGTGCATTTGTAACAACCTTACCATTACAAAacttctatttgatcaaataatgCTCAGGTGGAAAATTGGCAATTCTATTTTTTGTAGACCAAATTCAACACTTATTGATAACCATTTAAAATTCCTCCATTTGTGGACTTATTTTTGTGAACTGACTTTGAGCGGAGTAAACTCTCTCACTTCACCtctatcttcctctcctctctgctgcatgTCAGACATGTTTGGTAACTAGGAAACTGTTTATAGTTTTTAAAGCTTAGTTCTCACTCCATTCAAGTGAGAACTTTCTCCAAAAAGTTGTATTGCTTCTCAGAAGTTTCCTTTTTTGAGTTCCAATAACCTTGCCAAAGTGTGGACGGCTTTTCTAATGCCTACTTGGTTTTTTTTGTTCTAATGCTAGGTAGCTAAAGCAGCCCATTTAAAGTGGGGTctgaacttcctgatttggcctcgttTTCTTTTGCTTGcttattaagaaatgctagcggcCATGACTGAAGCCAAACGACAGTtgtcttgggggtgtggtttgatgtgggtgtgtcTTGGGTGTGTCTTTGCCAatcaatcacaacaaacaaggGCAGTCGTGAGTACAGCGAGGTAAGCTAAGCTTAGCtggattctcccccccccccccctcctgactGACTCGCCATCTCAAGATGCTCAGCTAATCCAGTTGTGTAGAACTTTCTAAAcgttgacaaaaaaaatcactggacaagttaatggaaacataGCTAGTGACATGCACAACTCTCTGGGTGAGGTTATGTCTTCAAGTCTCTAGTGTATTACAAGTTATGGACAGGTGCAGAAGGGGTGGAGAGCATTACACTCCATCCTGAGATGCAGGAGGATGGCACTCTGTAGGCCACTGACCAATTCAAAGCTTCCTCCAGGaggtcagtagcctacagagtaataTGAGAAGAGTGCAATTGCTgaacttactgtatgtaggtaTTCGGATGTAGATATTGGATGTAGATATTCGTTTTGATACGTTCTACGTGTAACAGTTCTACGTGCCACAGTTCCATGTCAAATAAACCATCATTATACTGTAAAAGCAGTGTTCTGCgaatataacaatgtgcaaatattacACGTCGTTCATCTTCGATTGTCATTCACAGCTGATACAGATATTGTCCCCCATCAGCAATTTGTCTGGTGCATGCTGGGGCTACCTTGCCAAACATGTCACTCATCATTCCTTCCTGTATGGTTTCCCGTATAAAACAGGAGTTCCCTGACATGCTTGAAGAATACACAGGGTCCTGCCCCAGATTGATAGTACCATTTGATAAACAAAAATGTACGAAAGACCTTTAAAGTAATACATGTCTTGTATAATTTCAATGCTGAGCGCAATGTCTCTCCCGATTCAGACATTAGTATCAACCTGTCTTTCAGTCAGAGGACTCCATGACCAAAGCCTCACTCCTGTCCTCCATCTGTACAAAAAAAGGAAGTGTTTATGAGTGACACATGTATTGAAAGGGTGGTATTATCTTGTCTGTATATTCTATTTGTCAATCTTTACATTGTTTTATTGTGGCAGCACAATTTCAGAGTCAAATTCCTGTACATGCAAATGTATTTGGCGAATAAATGGGATTCTGA
>TU2169342
ACAATCCGCCTCTCATCCAGTGCCATTCTCATTGGCCATATTTGTGTTATGGCTACATTCCCCGCCTTTTTTGTCACTATGGAAAACCCCTCCTACTTGAATACAGCTCCAACCAGCAGCAGATCTTATTTAGAGAAATAGAAAGATAGAATTGAATAATACATCATTTTGGGGTCGGGAAGACTCTCTAAAGGTCCACAACAAGTGCAAAGGATCAGATTATGTTTTGTGAAGACTCTGATGCAGAATTGACACTGAGCAGATCGACCTCTGGGACAGAAGATGGGACTTCGACTATATGAAGAGGAGGGAAAACGTTGTCCACAGTCTCACGACAAAGACAGTGGGAATCAAGCTCTAACAGCAAGACTTCCTATCAAATATTGATAGCGACAGGCATGTTGGAAAAGCATACTTCAATGTTCCATTACCGACACAGTGGAAAGAGGTTCTTGACACCTGAGGAAAGGCTCAGATCAGTCCAGGTGGGACTCTTCCTTCTGGAGGTTTTGAAGATTGATCTAAAAACAGTCGAACCATATACAAAGCCAAGTTAAGGACTTCATTCTACTTGCGAAGCCAAAGCAATACTTAAAAGCATCAGAGTTTCAGAAGGACTGCTTCAGTGAAACACAGACTAACTGCAAACAAATCTGTGTTGCAGAAGGACATTTTGAACTATTTTCCAACAGCGAGAGACCTGGACCAGGAAGAAAGAAGTGTGCCGGTGgaaagggagggggtggagaaggAGCTTTGCAAgaaggtggagacatggagagggtaCTGGAATAGCAAAAAAGAAGGGGCATATTGGCTACCCCCCTGGTGCAATGTGTGGCATAGCATCCTGTGGGGGTGGGGCTTACTGATGGTAAACATGGTCCCCCACGGCCGGCATGTCTGCCACGCCCACACCGAGGACCCTGGGGACGACCGAGAGGAGCGCATCCTGGCCGTGCTCGGGATCATCGGGACCGTGCTCAACCTGCTGGTGGTCATCTTCGTCTATATATACACCACCATCTGACCACTACCACCGCAACGATCCCACCAGTACTGGACCACGGTCCAGGCTGACACGTCACCAAGGGAGAGGGGAACGCAGCGCAGAAAATGGAGGTGGACCAAGAAGGAGTAGGACCAAGCCCGTCAAAACCACCAGTGTTATCGAGCTttgacccccaaaaaatctaaGCCGTGCCTGACCATATCGCCATCCTTTCCATCTTTAGGCCCGGGAGGGTGAGGAAGAGCAGGTTTATTCATGAAAATGGCCATTTTGATATCAGATACATGGGAAACCTCTACCATTTCGTACGATGACAAGGCTATTGTTTTGTACAGACTCTCTCACATGCATTATTTGTAGATGTTTAGATAAATTCGCCCTGTTTGATTATTCATTCGACACATATTTACCTAACGATTCTTTTTTGTTGGCCTTTTTGTTCTGAATTCACACTTTATTGTTCGCTAGGGTTAACCTTTGTCAAGAAGCACAAAGACTCTGCCCGTTGAGGAAGTGATGGAGAATTTTATCTTGGTCAAAAAGGCATTGTCACCTGGACCACATTCCAACGCTGAAGGATATGACATTCACCCTCACATAGTGAAAATGAGAGGCCGTTCACTGAGACCCCAATATCACTGCACTGTACGAAGAGCAGGCCTCAATATTCATTTCATCCTCAATATACTCTTTTCTACTAGCAAACCTGAGACGATGTGATACCAAGAGAATATCCTTGGAGCTCTTGTTTCAAGAAAACTCCTGTTTCCACACATTTTATCTTGTGATTTATAAGTGTTAACTACAATAACAAAAGAGACCGATAAGAGTCAAAACTCATTTGTATCATTATTATCAATTGACGCTCATTATATTTCCCCACATTCATGTATGATACACAttcacataccccccccccccttcccccccatTCCCGCTGTAGCCAACATGCCATTTTCAACTGAAAAGCTGAATATGGCTTGTCACTGCACCAGTTGAAGCAAAATATTGGGTTTCCATTTATAATCGATGTCCGAGTATTTAACCGGTAGGGTGTCAGATGTGGCTTTGAGATACTGCTGTGACATGTAGCACGTGCATTACCTGTTCACCTCCAAGAGTTTCACTCACACACGGGTACAGCACGTGTTGTTTTTGCCCCAATTGCCAACCTTGCTGCGAAACCACATCTCAAGTCAATCTCCAGTGCTTCCAGAAGAGTTCATTACTTGAACAAGAACACAGACCCACACTCCTCACCTTGAAAAAACACTTGCCTTACTGATGTCATTGAAGAGACACTTTGGTAGCTGTGATGGAAATGCTTCCtgatgcttttttattttttaacacaATCTCTTATATTGGTATAATGACATTGTTCCTGTTCACTATGCCGTCCACAGTGAAGTGAATCGGAGTGAATAGTAATGGGGATAGACAGAATTGACTCTCTATTGCCAGATATATTTACCTAAACCACCCAATACTGTGGCGTGTTTGTGCTGATTGTTGTctagaccagtgtttcccaactccggtcctcgagTAGGCTACCCCCCCAACGGCACACATTTGTGTTGTAGCCCCAGACAAAACGCACGATTCAACTTGCCAGGGCCTTGATTATTTgacaagtagaatcaggtgtACTTCAAAAATATGTACTGTTGGGTGGTACTcaaggaccggagttgggaaacactggtctagGCTGTAGTGCATGGCGATGTACACTAAATGATACAGTACAACACACAGCTGTACTGTGTCCTATATCATAAAGACATTGACTGTAAGCATGCTAAACATTCCCGAAACACTGTTAACACACAGCTAACCATTGAATAACAATGTTTAAACAAACAAGTATATTTTTATAGTGCAACACACCACTAGAAAAAATATTGGAGTTGACCATCCTTTCTAGTTTAGCTGCAGTGCAGGGCTTTGTGCCATTATAGAGCTTTTGCTTTGGACCAGACGAGAAGTGACCAGGGACCAATGGGAGGGAAGAGCCTGGAGCAGACTCAAGACCATCTGCTGTCCCTGTGGACAGTGGCACCTCCTCAACCCAgaacagagccagagccagaatgGCTTCCTTatccctctcatcactccaccACTTAAACTGAACTGACAGAAGTACTTAAATTCAGGGACTTGTGGGTAAAATGTAACCTCAGAATGTGAGTTTTTACAATGTGTCCTCAATGCCCTGTGTGTACTCAGACTTTTTCAGCACCAGTCATTTTACCAGTTTGTGTACAGTATTAGGGTAGAAAAATCACTTAGTTTGTACACTATGAAAATGCATCTTTTTTATTAAAATCCAAATGAGCTTTTGTTTTATTTCACATTGGTGTGATGCAGCACCTGATATTTTTCCACAGGGTATGTTTCATTGAATTAGATATTTCGTCTATACAATGGGTTTTATTTTGTTTCCTAAATTGTAACTATGACAATCCAACTTTAGTCATGATGTATGAGGGACCTGCATTTTGGAACTAAAGGGAATCTTTTGTGGAGGATTCAGATGTGTCTGAAGATGAACATTTTTTCACCCCTCTTGAATTATTTTCAAGTTATGAAATATTGCTAGTTCTATAGAAACAATTCAAACTCAACTTTTGCCAGAGTTATAAATCATGTTAATGTTTAAAAGAGGAGAATGGGGCATTTACAGTCCTGCATTTCTCTGGATCTCTATGCAGTTGTCTGACTCTTTATATTAGtgtttggaaatgtttgcaaaattGTGTTATATTTCATGTATTGTTTATATTATATTGAGTATTCAAATAAAAATGGAAAATGGTACCACTTCGCAAAATGTTATTAAGTCCAAAGCAAAGGCCATGTTTGCAGCATAATCAACAGGACAAGTATACCATACACACAGTGCATTccgaaagtattctgaccccttgccTTTAGTCCTTAtgctaaaatggatgaaattgtttttttcc

Function

NR:

description
hypothetical protein EH28_17311

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039405.1 False 2043 mRNA 0.46 2 6268918 6280150
TU2169345 False 1756 lncRNA 0.41 2 6264040 6317522
TU2169342 True 3990 lncRNA 0.43 2 6267302 6277663

Neighbor

gene id symbol gene type direction distance location
LOC118944082 NA coding downstream 70551 6181377 ~ 6231808 (-)
LOC110503585 LOC106612713 coding downstream 93830 6159711 ~ 6175088 (-)
LOC110503586 LOC100380764 coding downstream 111257 6148189 ~ 6157661 (-)
LOC110503579 LOC106612719 coding downstream 743158 5520441 ~ 5525760 (-)
LOC110503580 LOC106612720 coding downstream 750146 5514730 ~ 5518772 (-)
LOC110503590 LOC106612705 coding upstream 91920 6371958 ~ 6472758 (-)
LOC110503306 LOC106612708 coding upstream 105135 6385285 ~ 6456532 (-)
LOC110503593 LOC106612703 coding upstream 187455 6467605 ~ 6475962 (-)
LOC110503594 LOC106612702 coding upstream 197049 6477199 ~ 6484541 (-)
LOC110503595 LOC106612701 coding upstream 210502 6490652 ~ 6511021 (-)
G1896296 NA non-coding downstream 92438 6176268 ~ 6176480 (-)
G1896213 NA non-coding downstream 159791 6108920 ~ 6109127 (-)
G1896182 LOC106612716 non-coding downstream 192433 6074145 ~ 6076485 (-)
G1896162 NA non-coding downstream 220287 6045593 ~ 6048631 (-)
G1896637 LOC106612710 non-coding upstream 81547 6361697 ~ 6364102 (-)
G1896673 NA non-coding upstream 204665 6484815 ~ 6485091 (-)
G1896676 NA non-coding upstream 206637 6486787 ~ 6487037 (-)
G1896030 NA other downstream 399700 5868896 ~ 5869218 (-)
G1894611 NA other downstream 1914982 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 1974440 4289886 ~ 4294714 (-)
egln2 egln2 other downstream 2193343 4053778 ~ 4075685 (-)
G1899875 NA other upstream 1766629 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 3290721 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 3725222 10005372 ~ 10012354 (-)
G1901206 NA other upstream 3925070 10205220 ~ 10205948 (-)

Expression

LOC118944097 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC118944097 Expression in each Bioproject

Bar chart with 17 bars.
LOC118944097 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013098 NA non-coding NC_007129.7 CM002902.2 49124765 ~ 49156952 (+)