LOC110503594 (LOC106612702)


Basic Information

Item Value
gene id LOC110503594
gene name LOC106612702
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6477199 ~ 6484541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582002.2
AATCGTAACCATCATCACGTGTCGCTATTGTGTCTACTCGATTTTATGCCGCGTTCAAGTGCTAGTCGTAACAAGGAAACTCGGACATttcgacttgctaactggttgaacaTTTCCGAGTTTGCGACTTGCtctaactggttgtagttattcATGATACTGCATTAGTTCCGACTAGAACGAGACGCGGAATACCTCAAGAGTGGGCTACAGTGATGATGCGATGCTGCGTAGGCTACGTGTGAGTGGGATGCAAGTAGCTTGCCGCCGACATTCTCGTTGCTGGGTGCACGCACTGTAGGCTACTGCGGTAAGGATGCGTCTGCTGACTGGCTCGAATAAGATGAGCAAAGAGACTCACAGAAAAATATGATTTTATTTTTAAAGCAGCCTTTTGACTACGATGCAGGTATAGGGGACCTTTTCCACCTTGAAATGTATGTATAGTAGCCTAAATAAACCCTCGTCGGTCGATGCTCATGGAGTCGTGTTCGTGGGAGACGCATAAAATGATCCTACAGACAGACGCGAGTCAAATACGACAATTATGAAATGAAGGTTAACGTCAAGCAGACAACATCCAACAGCAATTAGATGTCTGGCAACGTCTTGCTCGGAGAATCTGAGTATGAAATGGTTGTTTAGGTAGACTGAATTGGTTTACATGCCTGACACCCGTTGATAGAAGCTGCGTATCTGGATGGAGAACACTGTTGACAGCACTGTCACTGAATATTACTCAGAAATACACAGCGCGTCATTACTTTGAGTGTCTATTCTTCATGCGTTGAAGCCTCCTTGTTAAGGTACATAGATGTTTGAAGATTGCACATTGGCTAGTATTTTTTTGATACTATCTTAAATAATCTGAAGGCTGCAACAATGATCCAGCAGAACAATAACAACAACTACCCATGCCTGGAAATGTCTGGCTCCCCCAGGGAGGTGCTGCAGAAGTGCCAAAAAAGCAATCTTTCCTTCACCAGACGCTTGGAGCTTGGGGACATGCCCTTAGTCAAGGGCCTTCGGGCCTGGGCTGCGTGCTCCAAGAACCGCAGGAGGGCAGCACCTCCCCCCAGGTCCCAGGGAACGTGCCCCAGGCCTGCAGATGTCTACCCAGTGGGACAGTGGGGCAGGCTGGGTTATGGTCTGGGGCTACCGCTGGACTCCAACTATGCCTCCAaccccagacagacaggcctgggGGCACTGGTGACTGTGGCCACGTTGAAGGCCTCTGAGGGAGGTGGTCAGACTCAGACAAGCTGTCTGTTCCTCAAGACGGAGGGTGGAAGGTGCCTCTACTCTACAGGCAGTCCAAGGCCCTGCACTCAAAGTCTGGTCCCTCAGTCCCCCTCCACGTTGGTGGGCAGCTGGCTGAGGGATAAAGTGGGAGGGGTCAGGGACTCCTCCACGGTGGGGAAAATGGGGGTGCAGGATATGGGAGGGGCCTTGGGGTCATACCAGGTCAAATCGAGGTCAGCCCAGAGGTGGAGAACATCCTGCAAGCCTGTGGTTTCCATCCAGGGGAGAACACTCCGGAACAGGGAGAATGCTGGCGAGCATACCCTGGAAGGGAGCCAGGAAAGCAGGGACAAAGGGGAGTTTCCCAAAGCTGGTCAGGACACTCTGAGTGGAAAACAAGACCGAGGGAGTACTAGAAGCCCCAAATGCAGTCACGCTCAGACCAAGACCTGCACCCAGTGTCACGGGCgaagaggagggcaggggagcaGCGGGGGTCAGAGGGGAGCTGCCTCTGTATGTGAGCAGGATCAGTCGAGCTGCGGTGTGGAGGGGAttaaggagaaggaggaggggaaagtgCAGGATGGCACTGGTCTCACCCGGTCAAAGCCCTGTGACTCCTCCCTGCCTCCAGACAACGCTGACCCAGAAAACTGCAGCAGTGACGTCGGGGACCGGGGAAAGCCAGACAGCCCACGCGCACAGGAGGGGCTGCATCCTGAAACTTCTCTCAACAAGGAGCACTTCCAGGACAAACTATGGGATAAAGACATACATACTGGAGGCAACGATGTGGCCAGTGGTATCATGAGTCATGTGGAAGACTTTGATGGCATGGTGGGTGCTGTGATTGGGTTTGTGGATCATATCAAGTCTGCAGAGTGTGATTCAGAGAGGCTAAGGGGAACCGGGGAGATAGCTGAGGGGAAGCTGCCCAACAGGTGGATCGATAGTCAAACCTCAGAGAGCCACTGCTGCTCTGAGAGAAGCTGCCTCAAAGACTGCTCCACTCAACCACCCAGACCAGTAGAGGGCAGCATTTCTACTGCTCCTGATGAGACTGGCTATGGTCAGATAAATCAGGAAACTAAATCAGATAGTCAATACAATAAGCTTTGTGAGAAATGTCAGCCAGAAGAAAAATATCCTGTGGCAGTGGATAAAGAAGGTTTACAGGAATCTGTACATGGCCTCTGTGaggaagaggagatagagggggaggaggggatcCAGTCAACAGCACCAGAAATTAGGGAGCTCTGTGGGGAGCATGGAGAGATACTGCCTGAGGTCAGGAGCACAGATGATGAGGCCAGGCTGGTAAAGGGAGACATCATATCCCAGAGAACTGAGCGAGGGCCTCACTGGGCAACGGAGGAACATGAGTGCGAGGAGACATGTAATATGGAAGCAAGGTGTTTTTCAGATTTACCAGCTAACCTAACTGAAGAGGCCGTAGTAGGGTGGAGGATGGCAGGGACTAGGCAGTTTAATTCCCGTTTACAAGGCTCTGCTGTTGCTGGCCCTGCTACCTCTGTCACACACTCGCCACCTAATCTGGCCTCCTCAAGAGCCATGGCAACAGGCCTCCCTGCTCCGAATGGGGGGCAGACAGACGCTGGAGGTGGGGCTCTGGTGCCTCTGCTACGGAGCCCAGGGGAGCAGGAGTGGAAGAGGGGCCCGGACGAGAGCAAGGTGGCCTCCAACAGGGGGTTCCTGGATGGGGGGCCAGAGGGGGAGGATGACTTTGGGCTTTTCATGCAGGCAGAGGAGCAGCTGCCCTGGGACGACAGCTTCACTGCATCACCCCTAGTGCCTTCTGGGAAAAGTGAGAGCGTTGGTTGGACAGACAGCCCATTCCAACAATCAGAGGATGCCTGGACAGCCTTCCCAAAGGATACAGCGGGAGAAGGGCAAGACACAAGAGAACAGTGGTGGCCCACAAATGCTGTGGAGGAGACAAGGGGCAGATTCTCTGCCACGCAAAATGTGAACAAAGTGTTTGTGGTGGCCTTCCCGTCACTGTCTACTCCCCTGTATGATCGTGATGCTGTTCCCACACTCGGCCAGCTCCTCAGAGGCATCTTGGATCATGAAAGCTCTGCAGAAGATCATGGCTTACTCGATGGGTTCCATGACTTGAACAAGATGTTTGGCTTGAAATATAAGAGGGCAAATGCTGTTTCCCGTGAACGTCTTCTACAGTCGCTACATTTGGGCCAGTGTGACACGGAAAATATGACTGGGCACCGAGCAGCCAACTACAGTCCCTCTCTTGGCCTCCCCTCGTCCAGTCAGCATGCACAGGCCTGTGGGAAGAGACGTTTATCGTATGTCAACAAGAACATCATGGAATAACCAAAATGTCCACTTTCCCTCACCTTCAACAACACATTTAGCCTTTTTCATGCATGTCCATGCCAAACCACTAATGGGACACAGTATTCATCTCCATGGGGAGAAATAACTAAACATTTCACAAGATTCAGAACTCGGAGGATGCTCTCCTTGGGCCGACTGGACCACCTGACTATATGGTGATCCTTAACAATGCCCTGTTTTGCTTTGCCTTCGCTGGAGTTAGATCACCGATGCATACCTGTGACAAATTTGATCAAATTAAGCACTAATTGTAATTTTTGTCTCACAGATATTTTTAAAATACAtgcaaatatttaacattcttatAAATCTTATTCTTATGGACTATAGGAAATGTTAAAGTAATTAGTGTTTGCCCGGAGAAGTGGATGTCtatacccccccccacccccctttgttcactcccaccctctttctcacacacacactgacatggacacaaacaacaaacacacactatcCTCTCCCTTCAACGTGATCTGGCCCACACGTGCCAGTGACAACTCTGGAGCAgaatatactgtaggtttagcaAACATTGGATCACAGCTCCTTTTCTTATTATCATAGTAAATAATGACCATGTTTTCTGAAATGATTACCTTTAAATTGGGGGTGTTTCTGGCTGTCAGAATACAGTTGTTTTGTGCTGGCAAAGAGAAAGTGTTATTTTACCAGTACATGTTTGTTTTAGATCACAAAAAGCAGTCAAGTCCTATTTAGATTCTATTTGTTTCTCTCTTGATTGTTGTTTGTGGGTAACCCAGGGCAACTCAGTAGGCCTACAGAAAATGTAGTGAATGTTTGTCATTTGTACATAATATGTATTCCTCAAGAAAAATGCAGATTTTCTGAGTTGTTCAAATTGATAAAACTAGATAGTCAACTTGTTAATTGATGTAATAAAATGATACGTTGATTACTGTTTTCCATCCTCAAAA
>TU2169535
TGCGGTGTTATTCATAACCGTCGTGCTTACTTCTGCCATTCATTTGCATATCTGCGTTTGTCTTGTAGCTTACTCGATGGGTTCCATGACTTGAACAAGATGTTTGGCTTGAAATATAAGAGGGCAAATGCTGTTTCCCGTGAACGTCTTCTACAGTCGCTACATTTGGGCCAGTGTGACACGGAAAATATGACTGGGCACCGAGCAGCCAACTACAGTCCCTCTCTTGGCCTCCCCTCGTCCAGTCAGCATGCACAGGCCTGTGGGAAGAGACGTTTATCGTATGTCAACAAGAACATCATGGAATAACCAAAATGTCCACTTTCCCTCACCTTCAACAACACATTTAGCCTTTTTCATGCATGTCCATGCCAAACCACTAATGGGACACAGTATTCATCTCCATGGGGAGAAATAACTAAACATTTCACAAGATTCAGAACTCGGAGGATGCTCTCCTTGGGCCGACTGGACCACCTGACTATATGGTGATCCTTAACAATGCCCTGTTTTGCTTTGCCTTCGCTGGAGTTAGATCACCGATGCATACCTGTGACAAATTTGATCAAATTAAGCACTAATTGTAATTTTTGTCTCACAGATATTTTTAAAATACAtgcaaatatttaacattcttatAAATCTTATTCTTATGGACTATAGGAAATGTTAAAGTAATTAGTGTTTGCCCGGAGAAGTGGATGTCtatacccccccccacccccctttgttcactcccaccctctttctcacacacacactgacatggacacaaacaacaaacacacactatcCTCTCCCTTCAACGTGATCTGGCCCACACGTGCCAGTGACAACTCTGGAGCAgaatatactgtaggtttagcaAACATTGGATCACAGCTCCTTTTCTTATTATCATAGTAAATAATGACCATGTTTTCTGAAATGATTACCTTTAAATTGGGGGTGTTTCTGGCTGTCAGAATACAGTTGTTTTGTGCTGGCAAAGAGAAAGTGTTATTTTACCAGTACATGTTTGTTTTAGATCACAAAAAGCAGTCAAGTCCTATTTAGATTCTATTTGTTTCTCTCTTGATTGTTGTTTGTGGGTAACCCAGGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582002.2 False 4571 mRNA 0.50 6 6477199 6484541
TU2169535 True 1103 lncRNA 0.42 2 6477370 6478792

Neighbor

gene id symbol gene type direction distance location
LOC110503593 LOC106612703 coding downstream 1237 6467605 ~ 6475962 (-)
LOC110503306 LOC106612708 coding downstream 20667 6385285 ~ 6456532 (-)
LOC110503590 LOC106612705 coding downstream 93745 6371958 ~ 6472758 (-)
LOC118944097 NA coding downstream 197049 6264040 ~ 6317522 (-)
LOC118944082 NA coding downstream 278832 6181377 ~ 6231808 (-)
LOC110503595 LOC106612701 coding upstream 6111 6490652 ~ 6511021 (-)
LOC110503597 LOC106612700 coding upstream 53257 6537798 ~ 6544812 (-)
LOC110503598 LOC106612699 coding upstream 100208 6584749 ~ 6589001 (-)
LOC110503599 LOC106612697 coding upstream 112156 6596697 ~ 6601829 (-)
LOC110503601 LOC106612696 coding upstream 139004 6623545 ~ 6686837 (-)
G1896637 LOC106612710 non-coding downstream 113097 6361697 ~ 6364102 (-)
G1896296 NA non-coding downstream 300719 6176268 ~ 6176480 (-)
G1896673 NA non-coding upstream 274 6484815 ~ 6485091 (-)
G1896676 NA non-coding upstream 2246 6486787 ~ 6487037 (-)
G1896677 NA non-coding upstream 2500 6487041 ~ 6487305 (-)
G1896678 NA non-coding upstream 4765 6489306 ~ 6489561 (-)
G1896689 NA non-coding upstream 42189 6526730 ~ 6534653 (-)
G1896030 NA other downstream 607981 5868896 ~ 5869218 (-)
G1894611 NA other downstream 2123263 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 2182721 4289886 ~ 4294714 (-)
G1899875 NA other upstream 1562238 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 3086330 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 3520831 10005372 ~ 10012354 (-)
G1901206 NA other upstream 3720679 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 3914501 10399042 ~ 10399857 (-)

Expression


Co-expression Network