LOC110503598 (LOC106612699)


Basic Information

Item Value
gene id LOC110503598
gene name LOC106612699
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6584749 ~ 6589001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582011.2
AACTTTTACTGTACTTGCCCATAGCACATTGACTCACACGGATCGGGGGTTGCACCGGAGCATTCTGCGGACTTCATACGGATCTAGCGTTCCCCAAAGAGAACGTCAGCTTAATATAAATAACCTGTTACTCTTGATTATGAAACGATGGATGATTGATAAATCAACGAATAAATATTGACATTTAACTGAAGACCTACTCATAGACCGAAGAagcattgttttttattttttttattctagCCTTCTATCTAGTCAGTGGAACTCTTTCGTTATCTTTGGATTTAAATTGTACTATTTTTTGCCGGTGTCCTGAATTTTGAGCAGACTCAAAGCTATTATAAACTCAAACAGGGATTTGCATTCTCATTCGCTCAAATATAGTTTCTTACTATAAAAAGTTGTATTTGGGATGTTGAGCTCGGTGAAGATGGAGTCTCATGAACTGCCAGAGTGGAATGCCTTCTACAGCGAAGCCAGTgagatgtattcctctcccagtgtcatGAATTCAATGAGCTCAATGAGCACCATCAACAGCTATATCAACCTGAACCCAGCTTGTTCTCCAGCCACCATGAACATGGGCTATGGCAGCTCTGGGCTCAACAGTCAACTGGCCTCCATGGGCGGAGGGGCCAACCATATGAACATGTCCCCGGTGACTTCATCCCTCAACCCCAACTCTCTCTCCCAGCTGGGCTCCCCAGCCCCTTCCCTGGGCTCCCTCTCCCACTATCAGAACATGGGCCAGCCCATGAGCCAGTTGAACTAcccctctcccacctccctcAACCGGGCCAAGGAGGTGCCCAAGCCATACCGCCGCTCACTGACCCACGCCAAGCCACCATACTCCTATATCTCCCTCATCACCATGGCCATCCAGCAATCCGGCAGCAAGATGCTCACCCTCAACGAGATCTACCAGTGGATCATGGACCTGTTCCCCTACTACCGCGAGAACCAACAGCGCTGGCAGAACTCCATCCGCCACTCGCTGTCCTTCAACGACTGCTTCGTTAAGGTGGCCCGCTCGCCCGACAAGCCCGGCAAGGGCTCCTACTGGGCCCTGCACCCCAACTCAGGCAACATGTTTGAGAACGGCTGCTACCTGCGCCGCCAGAAGCGCTTCAAGATCGATCAAGAGAAGGCTGCGAAGAAGTCTGGCAAGGCCCAGGAGGGAGGCTCGGGGAAGGGGGGCCATGGAGACAGCCTGATGGAGGAGCACAGCCCAGCGGGGGGCTCGGAGGGGGCTGACTCTGCCCACTCTGACAACTCCCACCCTGGTTCCACCTCAGAGGAGCAGCAGCAGAGGAGCATGGTCCAGCTGGACTGCGCCCCACAGCCCCAGTCCCACGTCCAGAGCACCCCGGTGGAAATCCCCTCCTCCgtgccctcctccatctccccctccgtccctctcctccactcccagatcaTGGGAGGCAGCCCCCACCTCCTTCCCAGCGCCATGCATAATCTGGACCTGCAGAATGACCCTCTCAAGGCCATGGATCCCCACTACAACTTCAATCACcccttctccatcaccaaccTCATGTCTAATGAGCAGAAGATGGATCTGAAGACGTACCAGGACCAGGTGATGGCCTACAATTGCTACGCCTCCTCCTCTCCGATAGCAGCCAAGCAGATCTACGACAGCGCGGGACCCTCGGCCATGGACTCTGGGGCCTACTACCAAACCCTCTACAGCCGGTCGGTCCTCAATGCCTCCTAACATGGAGGCCTTCTGGACCACAGCCAAGTGGTGCTGACAAGGACTTTTAGCAGCCTTGAAATCCCAAAATGTAAGATGGCTGCCATTGAAGGGCTACTCAATAGAGACCAAAGAACATTTAGCAGTGCTGATACACACTTCAAAAGGGGAACCCTGCAGTTACATGAAGTCGAAGACAAAGGTAAAACCCAGTGCTGGATTGACACCTATTCATCAGAAGGTCTTTAAAACTGATACATTCATAAATTCACACAGAAGTCATGTCTCCCCTTTGCCATTTTGTTTGCTTTTCTCTTTTTTTAGACTACTTCAAACTGGGTTTTGGTTTGTTCAACAGACAAGCAGGACTACTTGGGTTGTACACATTGTAAATAGATGGAGCGGGGGAAAGGAGTTGTGCATTTATTTATGAAGGGAAGAAAATTAATATATCTTGTACAGTGCTGTATTGACAAGTTACAAAACAAATGTGACATGAAACAATTTGAGGGATTGTGGGAGTGAGAAAAGGTTCAGGTTACTGCTTCGAGGCAGTTGTTACTGCATTACAGGGAATTCTTGTTGTGTTTTACAACATATTGCTTCATTCCCATTTTTAATATGCTGTTTTAATCTCTTCAAATACCCATCCATAAACACAAATGTAGCTGCCATGGTTAATTTTTACAAGTGGTGGAAGGCTGTTGTTTTTACTGATAAGAGAGCCATTTCTTGTATTCTTTTACCAGGTATCCTTTTAAAGAAAAAAGATGGCGTCTGTTTAAAAATGGACGAAACTGTGGTAAATCTCATTTCAGCTTTGTTTGtctgttttttaaaacattttcagaGACCCCCCTTTTATTATCAATAATGAGAGCCTGCTGTTCCCCAGCTCTTCATGGCATAGGATATTTTGGAATTGCTTCACATTATATTACACAACATACCAAGGGTTAGGAGGGAGAGGAGCTATGGTATGTCCGTCACTAAGATAGGAGTTGAATGGAAATGCACTAATAGGaccatttacatacagtactttGCACGAGATTTCCCACCATTTTACACAGCTGGGGAGGCCCAGTGTGTGTTACAACAATGGTAtataataacccccccccccctttttttttttaactgcaaaTGGCAAACTAGAATTGGATCACTGTAACAATGTCAATGCAACATTGAGCTTTATGTCGCAACCCTCATCCTCAAAGTGCCTTTCAAGATGTTTTGATAATGGAGGACCGATAACTGAATTTTCACTGAAGGAACACTTTTTCAAAGATAAACCATGAGTTTCAGGTCAgaaatgctgttttttttttatttcttgtATTTTAGTTTCAAAAATACTATTTAAACAATTTTGCTTTTCAGacttatatattgtatatattgtcAGGTTGTTGTTTATGGTTTGAATGTTGTGATTGGAACTATTCatgtttttcttattaaaaagcTAAACTTTGGGGGAGAAACACGATTGTTGCCTGTTCCGttgaaataaatatatacatgaaATTATCTATA

Function

NR:

description
forkhead box protein A2-like

GO:

id name namespace
GO:0048785 hatching gland development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0033504 floor plate development biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0042593 glucose homeostasis biological_process
GO:0048665 neuron fate specification biological_process
GO:0010817 regulation of hormone levels biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K08035 FOXA2, HNF3B; forkhead box protein A2, hepatocyte nuclear factor 3-beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582011.2 True 3265 mRNA 0.46 2 6584749 6589001

Neighbor

gene id symbol gene type direction distance location
LOC110503597 LOC106612700 coding downstream 39937 6537798 ~ 6544812 (-)
LOC110503595 LOC106612701 coding downstream 73728 6490652 ~ 6511021 (-)
LOC110503594 LOC106612702 coding downstream 100208 6477199 ~ 6484541 (-)
LOC110503593 LOC106612703 coding downstream 108787 6467605 ~ 6475962 (-)
LOC110503306 LOC106612708 coding downstream 128217 6385285 ~ 6456532 (-)
LOC110503599 LOC106612697 coding upstream 7696 6596697 ~ 6601829 (-)
LOC110503601 LOC106612696 coding upstream 34544 6623545 ~ 6686837 (-)
LOC110503602 LOC106612694 coding upstream 109986 6698987 ~ 6735315 (-)
LOC110503603 LOC106612693 coding upstream 168473 6757474 ~ 6795108 (-)
LOC110503307 LOC106612692 coding upstream 312463 6901464 ~ 6908734 (-)
G1899093 NA non-coding downstream 12668 6567369 ~ 6572081 (-)
G1899085 NA non-coding downstream 25002 6559063 ~ 6559747 (-)
G1899083 NA non-coding downstream 28833 6555697 ~ 6555916 (-)
G1899082 NA non-coding downstream 30076 6554359 ~ 6554673 (-)
G1899080 NA non-coding downstream 31833 6552408 ~ 6552916 (-)
G1899158 NA non-coding upstream 105625 6694626 ~ 6695117 (-)
G1899160 NA non-coding upstream 106395 6695396 ~ 6697633 (-)
G1899187 NA non-coding upstream 152171 6741172 ~ 6791865 (-)
G1899231 NA non-coding upstream 229720 6818721 ~ 6820879 (-)
G1899262 NA non-coding upstream 273366 6862367 ~ 6862566 (-)
LOC110503590 LOC106612705 other downstream 124684 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 352941 6181377 ~ 6231808 (-)
G1896030 NA other downstream 715531 5868896 ~ 5869218 (-)
G1894611 NA other downstream 2230813 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 2290271 4289886 ~ 4294714 (-)
G1899875 NA other upstream 1457778 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 2981870 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 3416371 10005372 ~ 10012354 (-)
G1901206 NA other upstream 3616219 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 3810041 10399042 ~ 10399857 (-)

Expression


Co-expression Network