LOC110503602 (LOC106612694)


Basic Information

Item Value
gene id LOC110503602
gene name LOC106612694
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 6698987 ~ 6735315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582017.2
GACTGGCCATTATTTCAACAGGTTTCATTTCACACTGGATCCCTGTTTTGGTGTTGACCATTACTTTACAATAATTGATGTCCTGTTCATGGCAGCAATTgaatctctctatctatctttctctgtctcacacacgcaggcacgctCTCTCATATAAGCACGCACTCGTTCTCGCGCTCTGTCGCTCTTACTCTCTATTTCCCCTCTCAATTACTTTTTGGGGTTTTCCACAGAAGTTAAAGAAATGCAATGTCCGATAAACAACTGATGGCAAATATGAAGCATTCTGTCAGATAGACTACAATGTGCAGATTGCAGACGCGTAGCGCGAGTGCAGTGTACCAGTGGCGCCATCTACAAGGTGAGCAAAGAAGAATTCGACACAGCTCCGGACTCTCTCTCGGAGGAATACGGAGTGAGGATTACACAGTTTCCTCAACGAATCAGTTGTACTATAGACAATGTCGTGGAGGTAAATTGACACCGAACCTACCTGAATGTGGGCAGAGCCTGAGGCCTGAGTTAACAGATCGCCTGCTGCTGCTGTGTGCGTGGCACGGATCGTCAGTGACTCTCttggaggaagtgtgtgtgtttggccttTGAAGAGCTCTCATCCAGCACACAGTGGCCCGGTCCTCCCCCTTCACCCCATCATCCTCCCCACCCACCTCTCTACAGCTAGCGACAGACGCCGGACAATAGTCTCTCCAAGATTTATGAGGTCCTTGTGGTGGCCTGGCTCTTTGTCAATAAGAGGGGTTTTATTTCACCACTTTTTTTTCTCTTGTCTTCTTCCTCTGAAAAAGGTGTGGGACCCAACTGTGAAATGGGAGACGGCTGTTTGACATGTGAAGCCCGCCTGGAGAAAATGTCTGCTTTCAGGCCTGGATATAAGGAATTACTCAACAAGAAGGAAACGTCACTGTACGGAATGTCGTTTTCCCTCTTCCCTTCTCATTAACAACAACATGTCGGATTGTCCTGACCCTGCAAATGCTTAGTGTCAAAATAACAATGCACCTACAGAATATGAGGACAATGTGCAACATTTCTTTCTGCAATGTGGACTCAAAGATCGACCAGTACTTCCAGCCTACGCTGTACATCATTGTCATCGTCCTGGGCCTGCCCACCAACTGCATGGCTCTTTGGGCGGCTTACTTGCAGGTGAAGCAGAAAAATGAGCTGGGCATCTACTTGATCAACCTCTCCGTGGCTGACCTCCTCTACATCGGCACCCTGCCCCTATGGATCGACTACTTCCTCCAGCACGACGACTGGATTCACGGCCAGAATTCCTGCAAGCTGTTCGGATTCATTTTCTACACCAACATCTACGTCAGCATCGCCTTCCTCTGCTGCATCTCCATCGACCGATACCTGGCCGTGGCCTACCCGCTCAAGTTCGCCAAGGTCCGGAGGGTCAAAACCGCCGTGCTGGTCAGTTCCGTGGTGTGGACCATCGAGATAGTGGCCAACTCTGCACCCCTCTTCCACGACGAGCTCTTCCAGGACCGTTTCAACCACACCTTCTGCTTCGAGAAGTACCCCATGCAAGACTGGGTGGCGGGCATGAACCTTTACCGGACCTTTCTGGGTTTCCTGGTTCCCTGGCTGCTCATGCTGGGTGCGTACCGGGGCATTCTGCGGGCGGTGCGTGGCAATGTGTCCACGGAGTGCCACGAGAAGGCCAAGATTAAGCGCCTGGCGCTGAGCCTAATCCTGATCGTATTGCTATGCTTCGGGCCATACCACGTGCTCCTGCTGTGTCGCAGCATCCTCTTCCTCCAGAAGCCCTGCGACTGTGGCGCAGAGGAGGACCTGTTTGCAGCCTACCATGTGGCACTGGCGCTCACCAGCCTGAACTGTGTGGCTGACCCCATCCTCTACTGTTTTGTTAACGAGGGCGCACGCCATGACGTCGGTCACGCGCTCACCACCCTGCTGGGGGTCTTCAAGCGGAACTCGCCCGCGCCAGCTGATGCACTGACAGCTGGCTCTGTCACCTTGGAGACACCACTGTCCATCAAGAAGCAGCTGGGCCTGTACAGCGAGGTCAAGGCCAGCACCTACAAGACAGAGCTGGTGGCCCTCAAAGAGGAGTGTCTTCAGATGACCATACTCGGTGTTAAGAAATGAACAGCCATCCTGATCCGCAATGGGCGGATATGAGAAAACACAAGACTATGTGGAAGTGGGGGATGATTCCGTTTATGTAGAATAGAACGTGGGGGAGATTTTAGAATTCTCATGTGAAATGTTTTATCAGTTTTGGGGATGACACCTCATTATGTACCTCAAATGGTAAACTGCGATTGAAATGTGTTTGATACAGATGAAAATAATCATATCATGATTGACCACGAGTACATTGTGACGACAGTAAGAAAGACCACACTAAGTTCAGTCGCATAGATGTGATGCAACGTGAAACTAAGGATGTTTGCCATCAAACTGTGTCTTTCGCCACCTCGTCATCTATTGTAGGTATGTGTTCTGGGTGGGACAGAGTTATCTAACAATGGATTTGACATGTTTACATTTCTCTTTCAATGAGCCTCCAGATGCATTGTAACAGCTCCAAAAATCCTAAATGTGTTCTGTCAGCCGGAGAGTGAAGCACAATGCTACGTGTTTGTGTTCGACAATTTCACTGGGAAATAAATTAAGTGTATCA
>XM_021582018.2
GACTGGCCATTATTTCAACAGGTTTCATTTCACACTGGATCCCTGTTTTGGTGTTGACCATTACTTTACAATAATTGATGTCCTGTTCATGGCAGCAATTgaatctctctatctatctttctctgtctcacacacgcaggcacgctCTCTCATATAAGCACGCACTCGTTCTCGCGCTCTGTCGCTCTTACTCTCTATTTCCCCTCTCAATTACTTTTTGGGGTTTTCCACAGAAGTTAAAGAAATGCAATGTCCGATAAACAACTGATGGCAAATATGAAGCATTCTGTCAGATAGACTACAATGTGCAGATTGCAGACGCGTAGCGCGAGTGCAGTGTACCAGTGGCGCCATCTACAAGGTGAGCAAAGAAGAATTCGACACAGCTCCGGACTCTCTCTCGGAGGAATACGGAGTGAGGATTACACAGTTTCCTCAACGAATCAGTTGTACTATAGACAATGTCGTGGAGGTAAATTGACACCGAACCTACCTGAATAAACACGGATGGTGACTTCATAGACAACAAGCATTTCGAGATGGCGTCAGGTTGGCAGCACTTTCACAAAGACATCAGAGAGGGAATACAAGCCTCCGAGTCGTCTGCACTCTGTGTGCACCTGCTACCAGCACTTTGCCTAATCTGCAGGCCATCGATTACACAGCACTCTGAAAATGTGGGCAGAGCCTGAGGCCTGAGTTAACAGATCGCCTGCTGCTGCTGTGTGCGTGGCACGGATCGTCAGTGACTCTCttggaggaagtgtgtgtgtttggccttTGAAGAGCTCTCATCCAGCACACAGTGGCCCGGTCCTCCCCCTTCACCCCATCATCCTCCCCACCCACCTCTCTACAGCTAGCGACAGACGCCGGACAATAGTCTCTCCAAGATTTATGAGGTCCTTGTGGTGGCCTGGCTCTTTGTCAATAAGAGGGGTTTTATTTCACCACTTTTTTTTCTCTTGTCTTCTTCCTCTGAAAAAGGTGTGGGACCCAACTGTGAAATGGGAGACGGCTGTTTGACATGTGAAGCCCGCCTGGAGAAAATGTCTGCTTTCAGGCCTGGATATAAGGAATTACTCAACAAGAAGGAAACGTCACTGTACGGAATGTCGTTTTCCCTCTTCCCTTCTCATTAACAACAACATGTCGGATTGTCCTGACCCTGCAAATGCTTAGTGTCAAAATAACAATGCACCTACAGAATATGAGGACAATGTGCAACATTTCTTTCTGCAATGTGGACTCAAAGATCGACCAGTACTTCCAGCCTACGCTGTACATCATTGTCATCGTCCTGGGCCTGCCCACCAACTGCATGGCTCTTTGGGCGGCTTACTTGCAGGTGAAGCAGAAAAATGAGCTGGGCATCTACTTGATCAACCTCTCCGTGGCTGACCTCCTCTACATCGGCACCCTGCCCCTATGGATCGACTACTTCCTCCAGCACGACGACTGGATTCACGGCCAGAATTCCTGCAAGCTGTTCGGATTCATTTTCTACACCAACATCTACGTCAGCATCGCCTTCCTCTGCTGCATCTCCATCGACCGATACCTGGCCGTGGCCTACCCGCTCAAGTTCGCCAAGGTCCGGAGGGTCAAAACCGCCGTGCTGGTCAGTTCCGTGGTGTGGACCATCGAGATAGTGGCCAACTCTGCACCCCTCTTCCACGACGAGCTCTTCCAGGACCGTTTCAACCACACCTTCTGCTTCGAGAAGTACCCCATGCAAGACTGGGTGGCGGGCATGAACCTTTACCGGACCTTTCTGGGTTTCCTGGTTCCCTGGCTGCTCATGCTGGGTGCGTACCGGGGCATTCTGCGGGCGGTGCGTGGCAATGTGTCCACGGAGTGCCACGAGAAGGCCAAGATTAAGCGCCTGGCGCTGAGCCTAATCCTGATCGTATTGCTATGCTTCGGGCCATACCACGTGCTCCTGCTGTGTCGCAGCATCCTCTTCCTCCAGAAGCCCTGCGACTGTGGCGCAGAGGAGGACCTGTTTGCAGCCTACCATGTGGCACTGGCGCTCACCAGCCTGAACTGTGTGGCTGACCCCATCCTCTACTGTTTTGTTAACGAGGGCGCACGCCATGACGTCGGTCACGCGCTCACCACCCTGCTGGGGGTCTTCAAGCGGAACTCGCCCGCGCCAGCTGATGCACTGACAGCTGGCTCTGTCACCTTGGAGACACCACTGTCCATCAAGAAGCAGCTGGGCCTGTACAGCGAGGTCAAGGCCAGCACCTACAAGACAGAGCTGGTGGCCCTCAAAGAGGAGTGTCTTCAGATGACCATACTCGGTGTTAAGAAATGAACAGCCATCCTGATCCGCAATGGGCGGATATGAGAAAACACAAGACTATGTGGAAGTGGGGGATGATTCCGTTTATGTAGAATAGAACGTGGGGGAGATTTTAGAATTCTCATGTGAAATGTTTTATCAGTTTTGGGGATGACACCTCATTATGTACCTCAAATGGTAAACTGCGATTGAAATGTGTTTGATACAGATGAAAATAATCATATCATGATTGACCACGAGTACATTGTGACGACAGTAAGAAAGACCACACTAAGTTCAGTCGCATAGATGTGATGCAACGTGAAACTAAGGATGTTTGCCATCAAACTGTGTCTTTCGCCACCTCGTCATCTATTGTAGGTATGTGTTCTGGGTGGGACAGAGTTATCTAACAATGGATTTGACATGTTTACATTTCTCTTTCAATGAGCCTCCAGATGCATTGTAACAGCTCCAAAAATCCTAAATGTGTTCTGTCAGCCGGAGAGTGAAGCACAATGCTACGTGTTTGTGTTCGACAATTTCACTGGGAAATAAATTAAGTGTATCA

Function

NR:

description
G-protein coupled receptor 4-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04312 GPR4; G protein-coupled receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582017.2 False 2680 mRNA 0.50 2 6698987 6735315
XM_021582018.2 True 2858 mRNA 0.50 3 6698987 6735315

Neighbor

gene id symbol gene type direction distance location
LOC110503601 LOC106612696 coding downstream 12150 6623545 ~ 6686837 (-)
LOC110503599 LOC106612697 coding downstream 97158 6596697 ~ 6601829 (-)
LOC110503598 LOC106612699 coding downstream 109986 6584749 ~ 6589001 (-)
LOC110503597 LOC106612700 coding downstream 154175 6537798 ~ 6544812 (-)
LOC110503595 LOC106612701 coding downstream 187966 6490652 ~ 6511021 (-)
LOC110503603 LOC106612693 coding upstream 22159 6757474 ~ 6795108 (-)
LOC110503307 LOC106612692 coding upstream 166149 6901464 ~ 6908734 (-)
zgc:162698 LOC106612685 coding upstream 239443 6974758 ~ 6986323 (-)
LOC110503623 LOC106612682 coding upstream 385331 7120646 ~ 7123814 (-)
LOC110503619 LOC106580766 coding upstream 393594 7128909 ~ 7150382 (-)
G1899160 NA non-coding downstream 1354 6695396 ~ 6697633 (-)
G1899158 NA non-coding downstream 3870 6694626 ~ 6695117 (-)
G1899093 NA non-coding downstream 126906 6567369 ~ 6572081 (-)
G1899085 NA non-coding downstream 139240 6559063 ~ 6559747 (-)
G1899083 NA non-coding downstream 143071 6555697 ~ 6555916 (-)
G1899187 NA non-coding upstream 5857 6741172 ~ 6791865 (-)
G1899231 NA non-coding upstream 83406 6818721 ~ 6820879 (-)
G1899262 NA non-coding upstream 127052 6862367 ~ 6862566 (-)
G1899263 NA non-coding upstream 127404 6862719 ~ 6863078 (-)
G1899277 NA non-coding upstream 142522 6877837 ~ 6878047 (-)
LOC110503590 LOC106612705 other downstream 238922 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 467179 6181377 ~ 6231808 (-)
G1896030 NA other downstream 829769 5868896 ~ 5869218 (-)
G1894611 NA other downstream 2345051 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 2404509 4289886 ~ 4294714 (-)
G1899875 NA other upstream 1311464 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 2835556 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 3270057 10005372 ~ 10012354 (-)
G1901206 NA other upstream 3469905 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 3663727 10399042 ~ 10399857 (-)

Expression


Co-expression Network