LOC110503614 (LOC100194580)


Basic Information

Item Value
gene id LOC110503614
gene name LOC100194580
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7013086 ~ 7022523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582039.2
TTGGAGCAGAGCCAAGAGAATTAGAGAGTCCCTTGTCGGTGTGTAAAGTCGTAGACAGAGCCACCAATTGGGTGAGCGGATGGTAATCGGGGCGTGTCATCGGACTTACCTCCGGGCAGAGCCGACTTGGAAGGAAGGAACAAAAACCTCCGAGATGATGCTGAGGGACCTTGTAGATCAATGAACAAACAGGTGACGGATGTTCCAGTTGATTGTTGGGCAAATTCGAGGCCAACACGACCTCTCATTTAAGTGAAAGGTGTGACTCCCCAGAAAACCAGCTTTTCCTGTGGGTCTCCTTATACAACAACTTCTAGCCGTCATCATATATACAGACTGTTGTCAAAGCCACCTGATGCACTGGCCTTGCCTCTTGGGAAAGAGGCTACTGAGCAAACCAGACTGTGCTGTCCTCCCACGGCTGCTGTAGATGTCAGGCAAGATGGCTGCCGACTCACCCGTGAGGACAGAGCATGAGGAGCTGCAGAGGAGGGCCAACCAGGTGACAGATGAGTCCCTGGAGAGTACCCGTCGTATGATGCAGCTAGTAGAGGAGAGCAAAGATTCAGGAATCCGGGCCCTGGTCATGCTGGACGAACAAGGAGAGCAACTGGAGCGGATTGAGGAGGGCCTGGACCAGATCAACTCGGATATGAAGGAGGCTGAGAAGAACCTCACAGACCTGGGCCAATGCTGCGGTCTGTGCTCCTGTGATAAGCTAAAGGACTTTGAGGAGAGTGGGGCCTATAAGAAGGTGTGGGGGAACAACCAGGATGGGGTGGTGTCCGGCCAGCCGTCCTCACGCGTGGTGGATGAGAGAGAGCAGATGATCATGAGCGGAGGCTACATACGCAAggtGACAAATGATGCATGTGAGGATGAGATGGAGGAGAATCTGGGACATGTAGGCAGCATCATAGGCAACCTGAAGAGCATGGCACTGGACATGGGCAATGAGATCGACACGCAGAATGTCCAGATTAACCGCATTCAGGGCAAGGCCATCCACAATGTATACCGCATTGATGCTGCCAATCAGAAAGCTAACAATCTAATGAAAAGATAAAGAGGAAGATTGTCCTTCTCTGCTGTGTGATCTTATCTactccctgtctgtctttctgtgccaATATGCGTCCAGTGACCATCCACCCACATAGAAAACCTGCCAAATTATTGTGTATGACGTATCATAAATCCGGAGCAGCAGGGTACACATCATTATTCATACCTGGCTCTAGATTGACCCTAGCCTGTTTGCCAGTCTCTGCCACATGACGAAGAGTGCAAGGAGTGGAATGCTACCGAGACTTGTGCCCAGATAGCCTGGAGaccacactgctgccatctgttGGCTAGATTGTTTTCTGAAAACTAGAAGCACACCCTCTCCGCTCTTTCACCATCCTCCGCTATCCTTCCTCCTTCGATGCAGAATGGACCACCAGTGGAATTGGGTTGCTATGCTTGTTGTCACCAGGAAGACTAAAGTAAATAGGAAAGGAATCAACATTCGGTGTCTGCTTTGCTTTTAACACGTGAATGAGGTTTGCCTGTCAATGATGACTATAGTTTTTAAAATGCACTTTAGAACTCAGTTttcgtttttatttatttaactcaaCAGTTGCATGACGGTAAACATATTCTCCCATGTAGGCTGTGTTGAGATTGTGAACTGGATTTAACATCTACATGTGTCTAGCAATTGATATGTTTTAGTTTTGATTAGACTATATTAGCGCTTCAATATAGCTGATGTCAAACTTGGTTTCTATCACACAATTTCCTAATTGTCATAACATCAAGTAGAcacacacccccctccccctattACATCCCTCTGATGTTGTGGTGTTCAACTATATAATTTTGTATACACGATAAATATGGACTTCTATTGTAATTCTGTATATAAAATATTAAAATGCATAATTATTTACGTTAA

Function

NR:

description
synaptosomal-associated protein 25-like

GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component

KEGG:

id description
K18211 SNAP25; synaptosomal-associated protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582039.2 True 1948 mRNA 0.47 9 7013086 7022523

Neighbor

gene id symbol gene type direction distance location
LOC110503612 LOC106612687 coding upstream 22058 6986712 ~ 6991028 (+)
LOC110503611 LOC106612686 coding upstream 39129 6964365 ~ 6973957 (+)
LOC110503308 LOC106612688 coding upstream 60015 6947878 ~ 6953071 (+)
LOC110503608 LOC106612689 coding upstream 80191 6915343 ~ 6932895 (+)
LOC110503606 LOC106612691 coding upstream 116540 6859036 ~ 6896546 (+)
trnar-ucg-5 NA coding downstream 67 7022590 ~ 7022662 (+)
LOC110503613 LOC100194580 coding downstream 452 7022975 ~ 7026660 (+)
LOC110503615 LOC106580762 coding downstream 4152 7026675 ~ 7029192 (+)
LOC110503617 LOC106612684 coding downstream 7446 7029969 ~ 7063089 (+)
LOC110503618 LOC106612683 coding downstream 48467 7070990 ~ 7076958 (+)
G1896929 NA non-coding upstream 483 7012400 ~ 7012603 (+)
G1896888 NA non-coding upstream 79846 6932955 ~ 6933240 (+)
G1896879 NA non-coding upstream 98078 6914760 ~ 6915008 (+)
G1896878 NA non-coding upstream 98541 6914304 ~ 6914545 (+)
G1896875 NA non-coding upstream 103643 6909212 ~ 6909443 (+)
G1896985 NA non-coding downstream 75923 7098446 ~ 7160964 (+)
G1897010 NA non-coding downstream 171039 7193562 ~ 7193766 (+)
G1897050 NA non-coding downstream 240552 7263075 ~ 7286921 (+)
G1897090 NA non-coding downstream 310651 7333174 ~ 7335630 (+)
G1897093 NA non-coding downstream 315068 7337591 ~ 7337796 (+)
G1896894 NA other upstream 71530 6940416 ~ 6941556 (+)
G1895266 LOC106612719 other upstream 1490221 5521415 ~ 5522865 (+)
bl1s3 bl1s3 other upstream 1493054 5518991 ~ 5520163 (+)
G1894083 LOC106612398 other upstream 2568110 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 2671682 4336602 ~ 4341404 (+)
LOC110503629 LOC106612674 other downstream 294429 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 1053683 8076117 ~ 8080686 (+)
G1898300 NA other downstream 2334528 9357051 ~ 9359164 (+)
G1898315 cep164 other downstream 2420771 9443294 ~ 9444057 (+)
G1898293 LOC106612633 other downstream 2497409 9519932 ~ 9525546 (+)

Expression


Co-expression Network