XLOC_037925 (zic5)


Basic Information

Item Value
gene id XLOC_037925
gene name zic5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31274108 ~ 31314324 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074445
GTGGGAAAAGGAGCAAGCAGAGTTAGAGGCAGGACAAAAGAAGTTCTATAGACGgccatatacatatattttaatggtTTCAGAAGGCCCGTAGTTGGCGAAAACAATAGCGTTGAGCGTGGACATGACAGCGTAGTGATGGAGCCCCCTTTAAGCAAGAGGAATTCGGCGATAAGATTAGCGGATTTGGCATCGACTCAAGCCCTTCCTCATCAGAATATGACAGGCTTCCCGGGGATAGGGGGGCATCACCCGCACTCCCACCATGCCCACCTCCACCCTGGGGAGATGGGCAACGACCCCGGAGTGGCTCTCACTCCATTTGGACCCGAGCACATGGCACAGACCAATGCTCTCAAACTTAGTCCATCTCAGCCTGTTCAAAGCCATCCCGAAGCCCAGACCGCGGCATCTTTCACGTCTTCTCAGACTACAGTTGGTTTCCCCGTGGCTCACCCCCACACAGGCTACACCACCAGCAGGGACTTCATCCTCAGGAGAGAGCTCTCAGCCTCTGCTATGCATGCACTTGGCGACCAGCATAGTTCCGCCTCCTCCCCTCATCACCATGGCATGTTCATTTCCCCAACAGGTGCTTATGGGCACGCGGAAGGTGGTGCCCATCCACTTTTCTCTGGACTGCACGAGCAAGCGGCCCCAGGtgcccaccaccaccaccatgcCCTCAACGGGCAGATGCGCCTGGGTCTACCGGGGGACATCTACGGCAGGCCAGAGCACTTCGGCCACAGGCCCGAGCACTATGGATCTTCTTCTCTGCACAGCTACAACTCCATGAACTTAAATGTGAACCTCGCCACGGCTCCTCACGGAGCCACGGGGGCGTTTTTGCGATACATGCGGCAGCCCATCAAGCAGGAGCTCATCTGCAAGTGGATAGACCAGGAACAGACTGCCAAGAAGCCCTGCTCGAAAACTTTCAGCACCATGCATGAGCTCGTCAACCATGTCACAGTGGAGCACGTTGGCGGACCGGAGCAGAGCACTCACGTTTGCTTCTGGGAAGAGTGTCCGCGCGAGGGAAAAGCGTTTAAAGCCAAGTACAAACTGATCAATCACATCCGCGTGCACACTGGCGAGAAGCCGTTCCCGTGTCCTTTTCCAGGTTGTGGCAAGGTATTCGCGCGTTCGGAAAATCTCAAGATTCACAAGAGGACGCACACAGGTGAGAAGCCATTCAAATGCGAGTTTGATGGCTGCGACAGGAAATTCGCCAACAGCAGTGACAGGAAGAAGCACTCGCACGTCCACACAAGTGATAAGCCTTACTTCTGTAAAGTGAGGGGCTGTGACAAGTCGTACACACACCCGAGCTCTCTGCGCAAACACATGAAGGTTCACTGCAAGTCTCCTCCGCCCCCTTCCGCCAACACGGGCTCTTCTTACCATCCCTCATCTACTACGATCGGTGATGCCCTTTCACCAAACCTAGATCCCCACAGGAACCGTTCGTCGAACCTTTCTCCTCAGGTGACCAACCTAAACGAATGGTACGTGTGCCAAGGGAGTGCTGGACCAAATAATCTACACACCCCCTCCAGTGATGTGCCAACGTCGGAATCCGACGACGAGGACTCTTtcagacacacagatccaagggCAATGCTCTGATGTGTACAGCAAGGAATATATTCAATATGAATGGTCCACGTAAAAAAAGTCAGTTCGTAAAAGTGGAACACCTATGGATGTCAGTGGGTGAAAAGTTTTGCCCCCCAGTTTGCCCTTAAAACATGCTCAGAGCATTGATGCAATTTATGTTCCATATAATAATCACATCCATTATCAGTTGCAACTTGCTAGATATGAAACCGACTTGTCCATGTTTTTAAGATTTTACCTGACTTGTCATCAAATATCATGAGCTCAAAAGATGTGTCATGTTTAGGTCGTTTTTGTAATAATACATACCCTTTGTTGCACAAAAACCTTTTTATAGATAATTTTACACGTTAAATGTCTGAGGGGCAAAAATTGCTGTGACAataattttgagtttttacttGTATATTGTCAGTGTCAAAAATGAATGGGTGGAGTTTTTGTTAAAGTTTATACAATAACTGTGGTCAGGACGGTTtttgtgatatttaaaatatttaaacctatattttatgcaaataattGTAACTCTGATTAAGGAGTACGAAATATGTCCACTGAGACCCTAAATAATGTATCGTTGATAGGCCTATCTCTGACTGATTTGTAAATATTATATGGTATTGATGCTTGTGAATGTTTTCGTAGCGTCTCAACGAGTTTTGTACATTGTAATTTATTTGCTGTTATTAATGTTGGTCTGGAAGTACAGATACACCAAAGAATAATATAATTTTGGTGAAAAGAAGTGATGCTTTTTATCGTGTTCTGTAAAAAAGGTCTTACTTGAATAGGTTGTATAATGTGAAGAATCGTTCGCATGAACCGTGTAGTTTTCTGTTGAGGTGCATGATGGTATTGATGGAAAAAAGTAAGAAGGTCGTGAAGaaatgtgatgtttgtgtataGATATATAAACTTGAATAAAAGGCAGGACGTGTAAATATGGTCTTTTCAGTAAAAA
>TCONS_00074446
GGCTCATGATTCAGTTTGAGTCATTTGAATCATGATGAGTCGTTACAAAAACATTCTATGCTCTTTTTTCGTTTATTCTGTGACGCACAGACAGAAACCGTTGACTTTCTCAAATTCTCATCGTTAAACAGTAGCGAGATTCTTTTGGACTCAAACGACAGGATGAACAACATTAATATCCTTAAAACTGAAATAACAAAAGCGTTCTGTCAGCGAAGAGGAAGCTTCAACGCTTGGGCACGCTATTTACCGCCATTGTTCTGCAGGTGTCACCAGTCAAGCCATTGACTTCATTAGCACAAGAATTGAGGAGTCATTCTCACTTTGAAAAAAGTCCCTGAGAACAGTCAAGCTCTGTAAACTGCTCGGGTTTTCTATACGGATCAATATCAGAGCAGCATGCGCTGAGAAGGAAACGCCATCCAAGCTCGGCAGGACGCTGACCTTTCACTCTACCTACAGGTCACATCATCCTCCCCTAAACAgGTGAGAAGCCATTCAAATGCGAGTTTGATGGCTGCGACAGGAAATTCGCCAACAGCAGTGACAGGAAGAAGCACTCGCACGTCCACACAAGTGATAAGCCTTACTTCTGTAAAGTGAGGGGCTGTGACAAGTCGTACACACACCCGAGCTCTCTGCGCAAACACATGAAGGTTCACTGCAAGTCTCCTCCGCCCCCTTCCGCCAACACGGGCTCTTCTTACCATCCCTCATCTACTACGATCGGTGATGCCCTTTCACCAAACCTAGATCCCCACAGGAACCGTTCGTCGAACCTTTCTCCTCAGGTGACCAACCTAAACGAATGGTACGTGTGCCAAGGGAGTGCTGGACCAAATAATCTACACACCCCCTCCAGTGATGTGCCAACGTCGGAATCCGACGACGAGGACTCTTtcagacacacagatccaagggCAATGCTCTGATGTGTACAGCAAGGAATATATTCAATATGAATGGTCCACGTAAAAAAAGTCAGTTCGTAAAAGTGGAACACCTATGGATGTCAGTGGGTGAAAAGTTTTGCCCCCCAGTTTGCCCTTAAAACATGCTCAGAGCATTGATGCAATTTATGTTCCATATAATAATCACATCCATTATCAGTTGCAACTTGCTAGATATGAAACCGACTTGTCCATGTTTTTAAGATTTTACCTGACTTGTCATCAAATATCATGAGCTCAAAAGATGTGTCATGTTTAGGTCGTTTTTGTAATAATACATACCCTTTGTTGCACAAAAACCTTTTTATAGATAATTTTACACGTTAAATGTCTGAGGGGCAAAAATTGCTGTGACAataattttgagtttttacttGTATATTGTCAGTGTCAAAAATGAATGGGTGGAGTTTTTGTTAAAGTTTATACAATAACTGTGGTCAGGACGGTTtttgtgatatttaaaatatttaaacctatattttatgcaaataattGTAACTCTGATTAAGGAGTACGAAATATGTCCACTGAGACCCTAAATAATGTATCGTTGATAGGCCTATCTCTGACTGATTTGTAAATATTATATGGTATTGATGCTTGTGAATGTTTTCGTAGCGTCTCAACGAGTTTTGTACATTGTAATTTATTTGCTGTTATTAATGTTGGTCTGGAAGTACAGATACACCAAAGAATAATATAATTTTGGTGAAAAGAAGTGATGCTTTTTATCGTGTTCTGTAAAAAAGGTCTTACTTGAATAGGTTGTATAATGTGAAGAATCGTTCGCATGAACCGTGTAGTTTTCTGTTGAGGTGCATGATGGTATTGATGGAAAAAAGTAAGAAGGTCGTGAAGaaatgtgatgtttgtgtataGATATATAAACTTGAATAAAAGGCAGGACGTGTAAATATGGTCTTTTCAGTAAAAA

Function

symbol description
zic5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within nervous system development and regulation of cell population proliferation. Predicted to be active in nucleus. Is expressed in several structures, including apical ectodermal ridge pectoral fin bud; central nervous system; lateral plate mesoderm; neural plate; and optic vesicle. Orthologous to human ZIC5 (Zic family member 5).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0001841 neural tube formation biological_process
GO:0033278 cell proliferation in midbrain biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0007417 central nervous system development biological_process
GO:0030901 midbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040622-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within nervous system development and regulation of cell population proliferation. Predicted to be active in nucleus. Is expressed in several structures, including apical ectodermal ridge pectoral fin bud; central nervous system; lateral plate mesoderm; neural plate; and optic vesicle. Orthologous to human ZIC5 (Zic family member 5).

Ensembl:

ensembl_id ENSDARG00000016022

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074445 False 2587 mRNA 0.47 2 31274108 31278048
TCONS_00074446 True 1887 processed_transcript 0.40 5 31274108 31314324

Neighbor

gene id symbol gene type direction distance location
XLOC_037924 NA coding downstream 2182 31264412 ~ 31271926 (-)
XLOC_037923 BX469902.1 coding downstream 86249 31187738 ~ 31187859 (-)
XLOC_037922 si:ch211-184m13.4 coding downstream 138100 31134907 ~ 31136008 (-)
XLOC_037921 gpr183a coding downstream 165823 31105389 ~ 31108285 (-)
XLOC_037920 gpr18 coding downstream 183515 31089649 ~ 31090593 (-)
XLOC_037926 tmtc4 coding upstream 180617 31494941 ~ 31525126 (-)
XLOC_037927 nalcn coding upstream 275101 31589425 ~ 31747106 (-)
XLOC_037928 BX571786.1 coding upstream 440757 31755081 ~ 31780466 (-)
XLOC_037929 NA coding upstream 444309 31758633 ~ 31763256 (-)
XLOC_037930 NA coding upstream 483521 31797845 ~ 31810047 (-)
XLOC_037918 NA non-coding downstream 383613 30865653 ~ 30890495 (-)
XLOC_037919 NA non-coding downstream 395892 30876643 ~ 30878216 (-)
XLOC_037916 BX571809.2 non-coding downstream 566154 30707839 ~ 30707954 (-)
XLOC_037932 NA non-coding upstream 743382 32057706 ~ 32058334 (-)
XLOC_037933 BX530407.2 non-coding upstream 782007 32096331 ~ 32105780 (-)

Expression


Co-expression Network