LOC110503655 (LOC106580791)


Basic Information

Item Value
gene id LOC110503655
gene name LOC106580791
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7735133 ~ 7738306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582093.2
ATTCATCTTTACATTTGGTGGATGAATATTGAGAGACGTTAGTGGTTTGGCAACACTTCTTCCCTGTCAATGGATTACCCCGAGGATCCAGGGGAACAGTTATCGGAGAATAAGAacgaagaagagggggaggataAAGGAATAGAGATAATGGATGAGGAAGAAGGCGAGGTGGAGGAAGATACAAAGCCTAAACTGGGCTGGGCTAATCTCCCGGACGTGTGTCTGCGGCAGGTGTTCTGGTGGCTGCGTGACCGCGACCGTGTCAAGGCGGCCCTGGTGTGTCGCCATTGGCACCACATTATGCGCTCGCCCTCCCTCTGGAGGGTTCGAAACTTCAACTTCTCCGGCCGCATCTCCAGGACCCGCCGTTCGGCGCTGGAGACGGCCGTGTGTTACGCCAAGACCTACGGCGCTTACCTGGAGGATCTGGAGATCCGCTTCTCCCACCCCCTCAACTCTCTGGTGGCCCGGCGCTTCCAGCAGACGCTGAGGACCTTCCTCGCCGCGCTGCGTAAAACCGGCGGCCAACTACGCCGCCTAACTGTCAACCACATGGCGCTGGACCGCGCCGCCTGGTGCCGCAGTGTACGCAACTCCCTGGTGCGCAGCCTCGCCTTCTACCTGCGCCGTGAGGGCTCCCGCCTTGGCTACTTGAGCCTGCGGGGGGCCCGCCTCAACCTGCCCCAGGGCCTGGAGGTACTGGAAGCCGTGGCTGCAGCTCAGCAGCACATCCACCTGGGACGCCGGCCCGGCATCACCCACCTCAACCTGGAGGACTTCTTCTCTCAGCCACTGGCCGTCTTCGTCAGCCCCGCCTTCCCCCAGGTCATGAACCGCTTCCAGGGCCTCTGCACCCTGACCCTTAACTACAGCTGCCTGTCGGACGAGCTGCTGGCGGCCCTGTCCGCGGCGTGTAGGAGCCTGGGCGGGGGAGGGTCCCTGCAGACGTTCACAGTACGATGCCATATCCACGAGCCCCACATCCAGGTGGTCTGGGGGGATGCCTGGTTCCATCTGGCTCAGCATTGTCCCGACCTTCGGGTGCAGATCACAGTGGAGCGGATCCTCGACGTGGACAAGCTGGGGAGGATTCTGCTCAGAGAGATCCCGCTGCGCTTGCTCAGTCTCACCAGCTGCTACTTCAGTGAACAGGACTGGAGTGCCAAGCCTGCCCTTACCAGCCTAGTGCCCTGCTACAGGAGCTGTTTACAGAAATTGACCCTGGACCTGAACAACAGCCACGAGTCTGTGGACGAGGAGCTGCTGGAGGTGGTGCTGCTGTGCAGCCGGCTGGTCTACCTGAAGGTCTGGGCCTTCCTGGACATCAGCTTCCTGGACCGGCTGCTGCAGAAACGCCTGGAAAAGAAGATCATCCTCAGGACCATCAAGGTGCGCATCTACACCAACAAATATGAGACTCAGGATGAGGATGGGCAACTGGAGGAGGTGTACTCTCGCTACAGACAACTCATCAACTCTGAGCTCCACTACCTCGCCATCTCTTACCCCATGCTCTGACTCCTGCCTAACAGACACATGGGCCCAAATAGACAGctttacaaaatatatatataaaataaataataacacaattTAAAGTAAGAGGAAGGAAACTTCAATTTGATACACAATCATGGATGGGTCTGGCAAATACAGCACACACACGGTGCCATCACTGTAGATATAAACACACGCTCCACAATCTGATCCTCCTTTTCTTCAAACCCAAATATTGTATTAAAATTGCTGCAAACAATACAAGCACTCCAGCTTTCCTTCATAATGTATACCTCATATTTTATTCATCAGTGAAAATGCTagccccggggg

Function

NR:

description
F-box only protein 39-like

GO: NA

KEGG:

id description
K10314 FBXO39; F-box protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582093.2 True 1833 mRNA 0.56 3 7735133 7738306

Neighbor

gene id symbol gene type direction distance location
LOC110503640 NA coding downstream 220127 7512805 ~ 7515006 (-)
LOC110503637 LOC106612664 coding downstream 227881 7504941 ~ 7507252 (-)
LOC110503632 LOC106612668 coding downstream 295669 7432304 ~ 7439464 (-)
spint2 LOC106612675 coding downstream 439661 7272344 ~ 7295472 (-)
LOC110503626 LOC106612677 coding downstream 478469 7193970 ~ 7256664 (-)
LOC110503654 trad1 coding upstream 147 7738453 ~ 7746131 (-)
LOC110503656 LOC106612654 coding upstream 134056 7872362 ~ 7875185 (-)
LOC110503659 NA coding upstream 199685 7937991 ~ 7947837 (-)
LOC110503311 LOC106612649 coding upstream 256235 7994541 ~ 8035329 (-)
LOC110503663 tp53i13 coding upstream 325438 8063744 ~ 8069386 (-)
G1899749 NA non-coding downstream 4013 7730899 ~ 7731120 (-)
G1899748 NA non-coding downstream 4844 7730072 ~ 7730289 (-)
G1899742 NA non-coding downstream 5560 7729004 ~ 7729573 (-)
G1899739 NA non-coding downstream 18987 7715839 ~ 7716146 (-)
G1899689 NA non-coding downstream 38777 7694150 ~ 7696356 (-)
G1899755 NA non-coding upstream 7281 7745587 ~ 7745798 (-)
G1899757 NA non-coding upstream 9644 7747950 ~ 7748261 (-)
G1899760 NA non-coding upstream 14268 7752574 ~ 7781875 (-)
G1899770 NA non-coding upstream 47492 7785798 ~ 7786242 (-)
G1899772 NA non-coding upstream 48862 7787168 ~ 7820573 (-)
LOC110503590 LOC106612705 other downstream 1275068 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 1503325 6181377 ~ 6231808 (-)
G1896030 NA other downstream 1865915 5868896 ~ 5869218 (-)
G1894611 NA other downstream 3381197 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 3440655 4289886 ~ 4294714 (-)
G1899875 NA other upstream 308473 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 1832565 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 2267066 10005372 ~ 10012354 (-)
G1901206 NA other upstream 2466914 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 2660736 10399042 ~ 10399857 (-)

Expression


Co-expression Network