LOC110503654 (trad1)


Basic Information

Item Value
gene id LOC110503654
gene name trad1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7738453 ~ 7746131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582091.2
CATGTCACCAGTTGGGCTTAATGAATTTGGTTTCAATTGCTAGGTTGGGCGTAGCTACTTCTATTTTGGGGTTAGAATTTACATCTATCCCGCGATGGCAGACAAGGAAGAAGAGAGAACCCGTATCTGTGACCAGTGTCACAAGGAGGTGGCTGTGTCCAACTTTGCCTTGCACGAGTCCCACTGCCAGCGGTTCCTATGCCTGTGTCCAGACTGTGATGAGCCGGTTCCCAGAGAGCTATTAGAGCAGCACCATCAGAACCAGCACAGCCAGGTGAAGTGCACCAAGTGCGACAAAAAGGTGGAGAGTTGCCAGCTCCTGGACCATGAGTGTAAGGCAAGGCTGCAGCGCTGTGAGTTCTGCCCGGTGGAGCTGCCGCTGTCGGCCATGGCGGAGCACAGCTTGGCGTGTGGCAGTCGCACCGAGCGCTGCTCCGACTGCGGACGCTACATCACTCTGCGGGACCAGCCGGACCATGGTCAGAtctgccctgacctcaatgctCCCGATAACCCCTCCCCGCCGTCCTCCAACGGCAGGCGAACGGCAGTGGTTTGCAGGAGCTGCATGAGGTCCTTCCCATTGGAGGAGATGGCGGAACATCAGCTGGAGTGTAACCACACATCAGAGGAGTCTaaaggtgatgatgatgaggaagatGGCAGCCACAAACAGGAGCAGGCCAGTCCTCGTTTGACCAGTTCTATGAAATCTACATTGTTCTCAGCCCAAGGCAAGAGGCAGGAGGGGGAAGTTGACCAGATCAGCACCTGTCCCCACTGTCACCTGGCTCTCCCCGTAGTCACACTACGATGGCATGAGGTCAAATGTCAGATCCATGTCAACTTGAAATGAGAAACGTGCTCAGAACCTCTGAAGGAACACTCCATGGTGAATTGGCATAGTGGAGGACAAGTTAGTGATGACGTGATTTATTTGAGCAAATTGCAAGTTATTTTTCGCAGAAAATCTGTATTTCAGAGGCAGTTGAGTTATTTCTGGTGATTGGACGGGTTGGGTAACAGCAAGAGATGATGACTTATTACATTAGTCAGGATTCTTCTCTCTACAAGAGGACAAGAATCCTATTTTACCACTGTTGTACAATttagcaataaggcccgaggaggtgtggtaaatggccaatataccacggctaagggcataTATCACAAACCCATGAGGTTATTAGTGCAGGAAagatacatgttttgtcatacctgtggtgtACATTCTCATATGCCACGgctgtcagtcaatcagcattcagggctcgaaccacccagtttataatacattgtttacaacagaaatacagtgtttTCTCCATTAAAGTTGTACATTTTAATATTGGTTTACAAATGTACATAACTGAtttaccccccccaaaaaataattgCTGTAATGAACACACAAGGAGATTATATTTTTTCATAATAGTTCCAAATGCTGTGAGCGTTTTATCTTCTCCTATTGTGATGTCACAAGGTGTCCCTTTTGGTTTCACGGTAACAACAATAAAAGCTATGAAGGTTCCA
>XM_036961313.1
TTCGCTTGCGAAGAATGGGTGATTGTTGATGGCTGACAGGCAGTACAATGAATAGAAATCAATGATGGCTGACAGGCAGTACAATGAATAGAAATCAATCTCATTTGCCAACAAAAATAACGTGCAAAACAATTTCCAAATGTTTTTGAAAACAAGAGAAAGTGGACAATAAACAGTAACTTCGAATCAGCAAAGCATATGAGAATGTCAGAACAGTTCCCACAGCAGCGGCAGATCATCATGATTGAAGTGGTAGCAGGGAAGAAAGAATCAAGTCACAAGGAGGTGGCTGTGTCCAACTTTGCCTTGCACGAGTCCCACTGCCAGCGGTTCCTATGCCTGTGTCCAGACTGTGATGAGCCGGTTCCCAGAGAGCTATTAGAGCAGCACCATCAGAACCAGCACAGCCAGGTGAAGTGCACCAAGTGCGACAAAAAGGTGGAGAGTTGCCAGCTCCTGGACCATGAGTGTAAGGCAAGGCTGCAGCGCTGTGAGTTCTGCCCGGTGGAGCTGCCGCTGTCGGCCATGGCGGAGCACAGCTTGGCGTGTGGCAGTCGCACCGAGCGCTGCTCCGACTGCGGACGCTACATCACTCTGCGGGACCAGCCGGACCATGGTCAGAtctgccctgacctcaatgctCCCGATAACCCCTCCCCGCCGTCCTCCAACGGCAGGCGAACGGCAGTGGTTTGCAGGAGCTGCATGAGGTCCTTCCCATTGGAGGAGATGGCGGAACATCAGCTGGAGTGTAACCACACATCAGAGGAGTCTaaaggtgatgatgatgaggaagatGGCAGCCACAAACAGGAGCAGGCCAGTCCTCGTTTGACCAGTTCTATGAAATCTACATTGTTCTCAGCCCAAGGCAAGAGGCAGGAGGGGGAAGTTGACCAGATCAGCACCTGTCCCCACTGTCACCTGGCTCTCCCCGTAGTCACACTACGATGGCATGAGGTCAAATGTCAGATCCATGTCAACTTGAAATGAGAAACGTGCTCAGAACCTCTGAAGGAACACTCCATGGTGAATTGGCATAGTGGAGGACAAGTTAGTGATGACGTGATTTATTTGAGCAAATTGCAAGTTATTTTTCGCAGAAAATCTGTATTTCAGAGGCAGTTGAGTTATTTCTGGTGATTGGACGGGTTGGGTAACAGCAAGAGATGATGACTTATTACATTAGTCAGGATTCTTCTCTCTACAAGAGGACAAGAATCCTATTTTACCACTGTTGTACAATttagcaataaggcccgaggaggtgtggtaaatggccaatataccacggctaagggcataTATCACAAACCCATGAGGTTATTAGTGCAGGAAagatacatgttttgtcatacctgtggtgtACATTCTCATATGCCACGgctgtcagtcaatcagcattcagggctcgaaccacccagtttataatacattgtttacaacagaaatacagtgtttTCTCCATTAAAGTTGTACATTTTAATATTGGTTTACAAATGTACATAACTGAtttaccccccccaaaaaataattgCTGTAATGAACACACAAGGAGATTATATTTTTTCATAATAGTTCCAAATGCTGTGAGCGTTTTATCTTCTCCTATTGTGATGTCACAAGGTGTCCCTTTTGGTTTCACGGTAACAACAATAAAAGCTATGAAGGTTCCA

Function

NR:

description
XIAP-associated factor 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582091.2 False 1539 mRNA 0.48 7 7738453 7744427
XM_036961313.1 True 1676 mRNA 0.47 7 7738453 7746131

Neighbor

gene id symbol gene type direction distance location
LOC110503655 LOC106580791 coding downstream 147 7735133 ~ 7738306 (-)
LOC110503640 NA coding downstream 223447 7512805 ~ 7515006 (-)
LOC110503637 LOC106612664 coding downstream 231201 7504941 ~ 7507252 (-)
LOC110503632 LOC106612668 coding downstream 298989 7432304 ~ 7439464 (-)
spint2 LOC106612675 coding downstream 442981 7272344 ~ 7295472 (-)
LOC110503656 LOC106612654 coding upstream 126231 7872362 ~ 7875185 (-)
LOC110503659 NA coding upstream 191860 7937991 ~ 7947837 (-)
LOC110503311 LOC106612649 coding upstream 248410 7994541 ~ 8035329 (-)
LOC110503663 tp53i13 coding upstream 317613 8063744 ~ 8069386 (-)
LOC118944074 NA coding upstream 792891 8539022 ~ 8546999 (-)
G1899751 NA non-coding downstream 1544 7736338 ~ 7736909 (-)
G1899749 NA non-coding downstream 7333 7730899 ~ 7731120 (-)
G1899748 NA non-coding downstream 8164 7730072 ~ 7730289 (-)
G1899742 NA non-coding downstream 8880 7729004 ~ 7729573 (-)
G1899739 NA non-coding downstream 22307 7715839 ~ 7716146 (-)
G1899757 NA non-coding upstream 1819 7747950 ~ 7748261 (-)
G1899760 NA non-coding upstream 6443 7752574 ~ 7781875 (-)
G1899770 NA non-coding upstream 39667 7785798 ~ 7786242 (-)
G1899772 NA non-coding upstream 41037 7787168 ~ 7820573 (-)
G1899793 NA non-coding upstream 77828 7823959 ~ 7824305 (-)
LOC110503590 LOC106612705 other downstream 1278388 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 1506645 6181377 ~ 6231808 (-)
G1896030 NA other downstream 1869235 5868896 ~ 5869218 (-)
G1894611 NA other downstream 3384517 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 3443975 4289886 ~ 4294714 (-)
G1899875 NA other upstream 300648 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 1824740 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 2259241 10005372 ~ 10012354 (-)
G1901206 NA other upstream 2459089 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 2652911 10399042 ~ 10399857 (-)

Expression


Co-expression Network