LOC110503656 (LOC106612654)


Basic Information

Item Value
gene id LOC110503656
gene name LOC106612654
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7872362 ~ 7875185 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582094.2
gagtgaaagtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagctcgtgTACTTCCTTCCTTATTTCCAACTCGACTGAGGCAGCTACTGGAAACCATTTCACAATTGTGGAGGGTAcactccaaaaaaaaaaaatgtcatgagAAAGTGAGAGAACAATTTAGAAACTAAGAGGAACCATAAAAACACAGTAGTTTTTGCGCTAATAATGTTGGGTCCAGCTTCCTGAGGCACCAGGACATTGTGTTGGGGCTGCTCTATGGAACCCGTCCTACTATTCTATGGGGAAGAAAGAAATGTAcaactgtctgtttctctcatgGACCTGTCTATGTTTTCTCCCGGGTTATGATTCAGAGGAATGTGTGACTTCTGTCTTGGCAAAGAGAGGTTCTGTTGACGTACCAAAGGGGGGCACTCTTTCCCTATCCTGTGATGTTCAGCATTGTGGAAATGATGGCTGGACAGGGGGATGGGGGCTGTCAACAGAGGGACAGTTCCTTCTCTTTAGTCACACTCCAAGGCATCATCTCTCCAAAGTCACATTGACAACCAATAGTACCCGTCTGCTCATGGACATCCTCAACGTCAACCAATCAGATCATGGAATGTACCAATGCCAGATCACCTGGGTTGAGGGATACACCAGTGTTGGACATATGACATatgtgaacatcactgcagCCATACCACCCACATCCGTGAGGAAGGTCTATTCCAGGGTGGTGGTGTATGTAAGTACCTGTTTGGTAATCACCCTGGTTTTGGGTCTGGCTTACCATATAAGGTCAAAGGTCCCATCTCAGCCCCCACCAATACCAccgcccaagcccccaccacGCTCCCAAAGTGCATGCAAGGACAAGCCCCCCACACCCAAGCCTAAACCAAAGACAGAGTTGGTCTATGCATCTCTTTCAAAGGACTGCCTTGAACAGCAGAATCATAATCCTCAACGAAAAGCCGCACAGCTCACAGTCTACTCCTCACCCCGCTTCTCCTGACTCACAATGTATGGCCAGTCAGACTTTTATATTGTAGAGACCTCAACCCAACTCCTATCCACTGAGCACACactagttgaatcaacgttgtttccacgaaagtacgttgaaccaacgtggaataaacGTTGCATTGACACCTGTGCCCAGTAGGCAGTGACCTCGTCAAATGGCTCGGATCTCTCGTCGTAAAGGCTAATGCGTTGAGTTGATAGTCACTGGACCGAGGTTCGAGTTCTGGCCGAGGCTATCCCCTGAATTCACGTCAATATTCACCTCCGCATGTAACAGACTTGTGTTGATCGAGTGGTCACATTTCAGAGATCTGGAATGAATGACTTCAGATGCTTTCTGATTTTGTATGTGTCGTGCAGTAACTTCCATCCTCGCGCTCAGCTAGATCGTGGTGCCATGTAAAAATCATCTGAAAATATAATCTGTGTTCAGTGTTCTAAATTGTGTTTTATGCAACTGTCTTTTATTTGTTAAACACTGTCATTATTATTTGTGGGAATTACTTTCTCTGCCGTGTGTTTGAATCAACAGACTAGAACTGATGTTCCATACCAAAATATTGCCACTGCTAAGAAAAGTTGAGCAAATTCTATTAAATGTAGCCCCCTCAAAACAATGTTCCATGTAAAGCAAACCTGGGTTCGGACActatttgaaatatttcaaatactttgagtgtttgCTCTAGCCTGCCTGGGGGACCTGAGGGGTGAGGTTTGCCATTTTtggactattctattggtccattatgccaggcaagctcaatcaagcacatatACATTATTTAAGAGGatttcaaatattatttgaaccCATGTCTAAAGCATGCTCTCTCCCTTTTATAATAAACAGACAAAAACAATC
>XM_021582095.2
agtgagtgagtgagtgaaagtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagctcgtgTACTTCCTTCCTTATTTCCAACTCGACTGAGGCAGCTACTGGAAACCATTTCACAATTGTGGAGGGTAcactccaaaaaaaaaaaatgtcatgagAAAGTGAGAGAACAATTTAGAAACTAAGAGGAACCATAAAAACACAGTAGTTTTTGCGCTAATAATGTTGGGTCCAGCTTCCTGAGGCACCAGGACATTGTGTTGGGGCTGCTCTATGGAACCCGTCCTACTATTCTATGGGGAAGAAAGAAATGTAcaactgtctgtttctctcatgGACCTGTCTATGTTTTCTCCCGGGTTATGATTCAGAGGAATGTGTGACTTCTGTCTTGGCAAAGAGAGGTTCTGTTGACGTACCAAAGGGGGGCACTCTTTCCCTATCCTGTGATGTTCAGCATTGTGGAAATGATGGCTGGACAGGGGGATGGGGGCTGTCAACAGAGGGACAGTTCCTTCTCTTTAGTCACACTCCAAGGCATCATCTCTCCAAAGTCACATTGACAACCAATAGTACCCGTCTGCTCATGGACATCCTCAACGTCAACCAATCAGATCATGGAATGTACCAATGCCAGATCACCTGGGTTGAGGGATACACCAGTGTTGGACATATGACATatgtgaacatcactgcagCCATACCACCCACATCCGTGAGGAAGGTCTATTCCAGGGTGGTGGTGTATCCACACCCAAGCCTAAACCAAAGACAGAGTTGGTCTATGCATCTCTTTCAAAGGACTGCCTTGAACAGCAGAATCATAATCCTCAACGAAAAGCCGCACAGCTCACAGTCTACTCCTCACCCCGCTTCTCCTGACTCACAATGTATGGCCAGTCAGACTTTTATATTGTAGAGACCTCAACCCAACTCCTATCCACTGAGCACACactagttgaatcaacgttgtttccacgaaagtacgttgaaccaacgtggaataaacGTTGCATTGACACCTGTGCCCAGTAGGCAGTGACCTCGTCAAATGGCTCGGATCTCTCGTCGTAAAGGCTAATGCGTTGAGTTGATAGTCACTGGACCGAGGTTCGAGTTCTGGCCGAGGCTATCCCCTGAATTCACGTCAATATTCACCTCCGCATGTAACAGACTTGTGTTGATCGAGTGGTCACATTTCAGAGATCTGGAATGAATGACTTCAGATGCTTTCTGATTTTGTATGTGTCGTGCAGTAACTTCCATCCTCGCGCTCAGCTAGATCGTGGTGCCATGTAAAAATCATCTGAAAATATAATCTGTGTTCAGTGTTCTAAATTGTGTTTTATGCAACTGTCTTTTATTTGTTAAACACTGTCATTATTATTTGTGGGAATTACTTTCTCTGCCGTGTGTTTGAATCAACAGACTAGAACTGATGTTCCATACCAAAATATTGCCACTGCTAAGAAAAGTTGAGCAAATTCTATTAAATGTAGCCCCCTCAAAACAATGTTCCATGTAAAGCAAACCTGGGTTCGGACActatttgaaatatttcaaatactttgagtgtttgCTCTAGCCTGCCTGGGGGACCTGAGGGGTGAGGTTTGCCATTTTtggactattctattggtccattatgccaggcaagctcaatcaagcacatatACATTATTTAAGAGGatttcaaatattatttgaaccCATGTCTAAAGCATGCTCTCTCCCTTTTATAATAAACAGACAAAAACAATC

Function

NR:

description
uncharacterized protein LOC110503656 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582094.2 False 1915 mRNA 0.45 5 7872362 7875174
XM_021582095.2 True 1790 mRNA 0.44 5 7872362 7875185

Neighbor

gene id symbol gene type direction distance location
LOC110503654 trad1 coding downstream 126231 7738453 ~ 7746131 (-)
LOC110503655 LOC106580791 coding downstream 134056 7735133 ~ 7738306 (-)
LOC110503640 NA coding downstream 357356 7512805 ~ 7515006 (-)
LOC110503637 LOC106612664 coding downstream 365110 7504941 ~ 7507252 (-)
LOC110503632 LOC106612668 coding downstream 432898 7432304 ~ 7439464 (-)
LOC110503659 NA coding upstream 62806 7937991 ~ 7947837 (-)
LOC110503311 LOC106612649 coding upstream 119356 7994541 ~ 8035329 (-)
LOC110503663 tp53i13 coding upstream 188559 8063744 ~ 8069386 (-)
LOC118944074 NA coding upstream 663837 8539022 ~ 8546999 (-)
LOC110503666 neum coding upstream 1398770 9273955 ~ 9283929 (-)
G1899822 NA non-coding downstream 66 7869603 ~ 7872296 (-)
G1899799 NA non-coding downstream 41158 7830874 ~ 7831204 (-)
G1899793 NA non-coding downstream 48057 7823959 ~ 7824305 (-)
G1899772 NA non-coding downstream 51789 7787168 ~ 7820573 (-)
G1899770 NA non-coding downstream 86120 7785798 ~ 7786242 (-)
G1899843 NA non-coding upstream 41793 7916978 ~ 7917397 (-)
G1899917 NA non-coding upstream 210174 8085359 ~ 8086215 (-)
G1899977 NA non-coding upstream 284260 8159445 ~ 8199230 (-)
G1900056 NA non-coding upstream 411259 8286444 ~ 8292797 (-)
G1900130 NA non-coding upstream 515098 8390283 ~ 8395234 (-)
LOC110503590 LOC106612705 other downstream 1412297 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 1640554 6181377 ~ 6231808 (-)
G1896030 NA other downstream 2003144 5868896 ~ 5869218 (-)
G1894611 NA other downstream 3518426 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 3577884 4289886 ~ 4294714 (-)
G1899875 NA other upstream 171594 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 1695686 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 2130187 10005372 ~ 10012354 (-)
G1901206 NA other upstream 2330035 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 2523857 10399042 ~ 10399857 (-)

Expression


Co-expression Network