LOC110503659


Basic Information

Item Value
gene id LOC110503659
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 7937991 ~ 7947837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039419.1
ATGCTTGATAaggtcctcctccccttctcatcatccacctctcaaTTCCATCCCCCTCCTTTCTGACCGAGAAGAGGCAGAGGCAGCCCAGTACCGCCTGGGGGCTGGAGCTCAGCCTGCAACTGCTACAGCTTGTCTGAGCTGAAGAGGCAGATGAGGCAGTGCAGGGTGGAGCTGCAGAGGGGATAGGAGATCCAGAGGCATACcgtggagagacggagggagtgtCTGGCACTACACTTCACTGACTGGAGGCTCCAAGCCGACCACACCCTCTCTCTGCGCCTGGATGCAGAGGTGAATGTGGAGGGGAAGCTGCTGAGTGTCTCTGTAGCCCTgctggaggaagaggaagagagctCTAGGCAGCGTGAGGATGCCTGGCTGGTTCTCAACAAGATGCCCCAGCCACCCCAGGCCCCTGTCAGGTCAGTGTCTGGAGATAGTGCTGCCCTTGTCAACGAcacatcaaccaatcaatcaatcacaccTGCAGCCTCTCTAtgccctcactcactcactaatgcCATTTCAGTTTCAACCATATGCGGATCTGAAATGTTACAGTTTCTTATGGTTTTTGGGAGCACAGGAAATTCTTTCAGAACTCCGTTACCCGTTATTTTagctatcatctctctctctcccattataGGATCTCTGACTATCTCTTGTACTGTTGCTCCCTGCTGTAGTTTCTCAGCCATAGAGCGCTGTAGTCCAGTACACGTGCCCAGAGTAGGCGTTCACGGAGGGGTCTACATTTTCAACAAGTCTCGAACCTCTTCACAGTGTTATGGCTCGTTTATCGCCATTCCCATATCGGACCCCCGAGAGCAGGGATGAGCTTTTGGAGCGCTGGGTCTCGACACACTCTGAGATTCAAACGACACTCACCTGTTCTCACGCCATGAGATAGACTTCAACCAGGCGAGAGGAATGGCtgctcccagatctgtttgtgctgtcttaccAACTTACCAACATTTGGCTGACAATGACCGCAGGAGTTAGCAAGACAGCACAAAGAGATCTGGGATTATGCAGTATAAAATTCAGGTCGATATTTCCATAAAGCTCAAGGAGTATTCAATGAGGAAGAAAATATCCTAAAAACACCATTCAATAGCTCATTGGCTTTGAATCAGTAATGATATCCTATTTTTGCCCAGGGGGTGAGCAGTGAATTCAGCAGAGCTCTCCAGTATGTAGGGATTCGCTGCAGCATACTGCACATTGTGGAGAGCGCCTCACTCTGGCTACACAGCAGAGTCTCTGCCATTCACAGTACCACCACCTATCTGATGGAGCCTTCAGATGGACAGAATACGGTGACATCAATCCAATACAGGCTACTTTGTATACACAGCATCCATACACTAAATGAACCATTTAAACAGACCCCAACATTACCCCAACATTAGCTTAACCACAAGTTCAGGTACACAGAAGTTACCAAATAGGATATCAAACCAACTTTAAGTAGGCTAATGATCGCCATTTACAGGGCAATGACTACTCTCTGAGGAAGATGATGGTGATGGAGGGTGGTTCTAGTCGCTCCCATAggctctcccctcctccttccttatGCCGCTCAGATCACTTCTCCAGACTGGTGCTCCCTGTGAGGGACACAGCTGGATGGGCCCTGGGAGTGCTGGGCATGGAGTTAGAAACCATCTCACCGGGCCACCAGGGGGGGCTGCAGCCTCACGAGCGCATGGACCTGTCTGCTGCTGGGGCTGCCTGTGTTCAGCTGCACAGAGCGAGCACTGAGTGGAGCAGGCAACACACACTGCTGGAGGCGGAGGCCCTGGGAGGGGAGTGGCGGGCGTCCATCTTGTACCTATGT
>XR_002470502.2
aatgtaaaaaaaacttaacttacccctctctcccctattgtGAAAAGGCCTCCCAATTAAGTGTCAAAATTAAAGGGAGGCAATCTATCATATGAACCACACACTGCTCTGCAGTGCAGCTGAGCTGAGCGATGAGGTCATGTTTCAGTGGCTgtgacccctccctccctttgccTCTTCTCATTTACAACAAGTGATCTTTTTCCTTCCCTTAGTGACCATCAAATAGAGACCTGTGCCTAGCAACAAGCAGACGCCACCCCTACACACACTGGGGAGGGTGCTGTTGGCTACAGGGGTAGATCGAGATTTGAAGTGAAGAGATTCATTTCCATAGGGTTGTTTATTGACTGCTTGCATTGCCACCATCCTTTGGGAATTGTACtcaaggggagagaaaggggaggattGGAATGTTGTCAATCCATTTGACACACAAGGAGAACGGGAAAAGCTTGTCTGAGCTGAAGAGGCAGATGAGGCAGTGCAGGGTGGAGCTGCAGAGGGGATAGGAGATCCAGAGGCATACcgtggagagacggagggagtgtCTGGCACTACACTTCACTGACTGGAGGCTCCAAGCCGACCACACCCTCTCTCTGCGCCTGGATGCAGAGGTGAATGTGGAGGGGAAGCTGCTGAGTGTCTCTGTAGCCCTgctggaggaagaggaagagagctCTAGGCAGCGTGAGGATGCCTGGCTGGTTCTCAACAAGATGCCCCAGCCACCCCAGGCCCCTGTCAGGTCAGTGTCTGGAGATAGTGCTGCCCTTGTCAACGAcacatcaaccaatcaatcaatcacaccTGCAGCCTCTCTAtgccctcactcactcactaatgcCATTTCAGTTTCAACCATATGCGGATCTGAAATGTTACAGTTTCTTATGGTTTTTGGGAGCACAGGAAATTCTTTCAGAACTCCGTTACCCGTTATTTTagctatcatctctctctctcccattataGGATCTCTGACTATCTCTTGTACTGTTGCTCCCTGCTGTAGTTTCTCAGCCATAGAGCGCTGTAGTCCAGTACACGTGCCCAGAGTAGGCGTTCACGGAGGGGTCTACATTTTCAACAAGTCTCGAACCTCTTCACAGTGTTATGGCTCGTTTATCGCCATTCCCATATCGGACCCCCGAGAGCAGGGATGAGCTTTTGGAGCGCTGGGTCTCGACACACTCTGAGATTCAAACGACACTCACCTGTTCTCACGCCATGAGATAGACTTCAACCAGGCGAGAGGAATGGCtgctcccagatctgtttgtgctgtcttaccAACTTACCAACATTTGGCTGACAATGACCGCAGGAGTTAGCAAGACAGCACAAAGAGATCTGGGATTATGCAGTATAAAATTCAGGTCGATATTTCCATAAAGCTCAAGGAGTATTCAATGAGGAAGAAAATATCCTAAAAACACCATTCAATAGCTCATTGGCTTTGAATCAGTAATGATATCCTATTTTTGCCCAGGGGGTGAGCAGTGAATTCAGCAGAGCTCTCCAGTATGTAGGGATTCGCTGCAGCATACTGCACATTGTGGAGAGCGCCTCACTCTGGCTACACAGCAGAGTCTCTGCCATTCACAGTACCACCACCTATCTGATGGAGCCTTCAGATGGACAGAATACGGTGACATCAATCCAATACAGGCTACTTTGTATACACAGCATCCATACACTAAATGAACCATTTAAACAGACCCCAACATTACCCCAACATTAGCTTAACCACAAGTTCAGGTACACAGAAGTTACCAAATAGGATATCAAACCAACTTTAAGTAGGCTAATGATCGCCATTTACAGGGCAATGACTACTCTCTGAGGAAGATGATGGTGATGGAGGGTGGTTCTAGTCGCTCCCATAggctctcccctcctccttccttatGCCGCTCAGATCACTTCTCCAGACTGGTGCTCCCTGTGAGGGACACAGCTGGATGGGCCCTGGGAGTGCTGGGCATGGAGTTAGAAACCATCTCACCGGGCCACCAGGGGGGGCTGCAGCCTCACGAGCGCATGGACCTGTCTGCTGCTGGGGCTGCCTGTGTTCAGCTGCACAGAGCGAGCACTGAGTGGAGCAGGCAACACACACTGCTGGAGGCGGAGGCCCTGGGAGGGGAGTGGCGGGCGTCCATCTTGTACCTATGT
>XR_002470503.2
aatgtaaaaaaaacttaacttacccctctctcccctattgtGAAAAGGCCTCCCAATTAAGTGTCAAAATTAAAGGGAGGCAATCTATCATATGAACCACACACTGCTCTGCAGTGCAGCTGAGCTGAGCGATGAGGTCATGTTTCAGTGGCTgtgacccctccctccctttgccTCTTCTCATTTACAACAAGTGATCTTTTTCCTTCCCTTAGTGACCATCAAATAGAGACCTGTGCCTAGCAACAAGCAGACGCCACCCCTACACACACTGGGGAGGGTGCTGTTGGCTACAGGGGTAGATCGAGATTTGAAGTGAAGAGATTCATTTCCATAGGGTTGTTTATTGACTGCTTGCATTGCCACCATCCTTTGGGAATTGTACtcaaggggagagaaaggggaggattGGAATGTTGTCAATCCATTTGACACACAAGGAGAACGGGAAAAGCTTGTCTGAGCTGAAGAGGCAGATGAGGCAGTGCAGGGTGGAGCTGCAGAGGGGATAGGAGATCCAGAGGCATACcgtggagagacggagggagtgtCTGGCACTACACTTCACTGACTGGAGGCTCCAAGCCGACCACACCCTCTCTCTGCGCCTGGATGCAGAGGTGAATGTGGAGGGGAAGCTGCTGAGTGTCTCTGTAGCCCTgctggaggaagaggaagagagctCTAGGCAGCGTGAGGATGCCTGGCTGGTTCTCAACAAGATGCCCCAGCCACCCCAGGCCCCTGTCAGGGGGTGAGCAGTGAATTCAGCAGAGCTCTCCAGTATGTAGGGATTCGCTGCAGCATACTGCACATTGTGGAGAGCGCCTCACTCTGGCTACACAGCAGAGTCTCTGCCATTCACAGTACCACCACCTATCTGATGGAGCCTTCAGATGGACAGAATACGGTGACATCAATCCAATACAGGCTACTTTGTATACACAGCATCCATACACTAAATGAACCATTTAAACAGACCCCAACATTACCCCAACATTAGCTTAACCACAAGTTCAGGTACACAGAAGTTACCAAATAGGATATCAAACCAACTTTAAGTAGGCTAATGATCGCCATTTACAGGGCAATGACTACTCTCTGAGGAAGATGATGGTGATGGAGGGTGGTTCTAGTCGCTCCCATAggctctcccctcctccttccttatGCCGCTCAGATCACTTCTCCAGACTGGTGCTCCCTGTGAGGGACACAGCTGGATGGGCCCTGGGAGTGCTGGGCATGGAGTTAGAAACCATCTCACCGGGCCACCAGGGGGGGCTGCAGCCTCACGAGCGCATGGACCTGTCTGCTGCTGGGGCTGCCTGTGTTCAGCTGCACAGAGCGAGCACTGAGTGGAGCAGGCAACACACACTGCTGGAGGCGGAGGCCCTGGGAGGGGAGTGGCGGGCGTCCATCTTGTACCTATGT

Function

NR:

description
EF-hand calcium-binding domain-containing protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039419.1 False 1855 mRNA 0.51 5 7937991 7946478
XR_002470502.2 False 2178 mRNA 0.50 5 7937991 7947837
XR_002470503.2 True 1434 mRNA 0.52 6 7937991 7947837

Neighbor

gene id symbol gene type direction distance location
LOC110503656 LOC106612654 coding downstream 62806 7872362 ~ 7875185 (-)
LOC110503654 trad1 coding downstream 191860 7738453 ~ 7746131 (-)
LOC110503655 LOC106580791 coding downstream 199685 7735133 ~ 7738306 (-)
LOC110503640 NA coding downstream 422985 7512805 ~ 7515006 (-)
LOC110503637 LOC106612664 coding downstream 430739 7504941 ~ 7507252 (-)
LOC110503311 LOC106612649 coding upstream 46704 7994541 ~ 8035329 (-)
LOC110503663 tp53i13 coding upstream 115907 8063744 ~ 8069386 (-)
LOC118944074 NA coding upstream 591185 8539022 ~ 8546999 (-)
LOC110503666 neum coding upstream 1326118 9273955 ~ 9283929 (-)
mpzl3 LOC106612639 coding upstream 1338139 9285976 ~ 9292964 (-)
G1899843 NA non-coding downstream 20594 7916978 ~ 7917397 (-)
G1899822 NA non-coding downstream 65695 7869603 ~ 7872296 (-)
G1899799 NA non-coding downstream 106787 7830874 ~ 7831204 (-)
G1899793 NA non-coding downstream 113686 7823959 ~ 7824305 (-)
G1899772 NA non-coding downstream 117418 7787168 ~ 7820573 (-)
G1899917 NA non-coding upstream 137522 8085359 ~ 8086215 (-)
G1899977 NA non-coding upstream 211608 8159445 ~ 8199230 (-)
G1900056 NA non-coding upstream 338607 8286444 ~ 8292797 (-)
G1900130 NA non-coding upstream 442446 8390283 ~ 8395234 (-)
G1900191 NA non-coding upstream 540839 8488676 ~ 8488916 (-)
LOC110503590 LOC106612705 other downstream 1477926 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 1706183 6181377 ~ 6231808 (-)
G1896030 NA other downstream 2068773 5868896 ~ 5869218 (-)
G1894611 NA other downstream 3584055 4353578 ~ 4353936 (-)
si:dkey-202l22.3 LOC106612399 other downstream 3643513 4289886 ~ 4294714 (-)
G1899875 NA other upstream 98942 8046779 ~ 8047974 (-)
LOC110503680 LOC106612628 other upstream 1623034 9570867 ~ 9579939 (-)
G1901072 LOC107388308 other upstream 2057535 10005372 ~ 10012354 (-)
G1901206 NA other upstream 2257383 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 2451205 10399042 ~ 10399857 (-)

Expression


Co-expression Network