LOC118944073 (LOC106612646)


Basic Information

Item Value
gene id LOC118944073
gene name LOC106612646
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 8076117 ~ 8080686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039380.1
CACAACACAACACTCACACCTTGGCCGATGGCCATATAGAAGGAGTTACTATCCTTGTAACTCAGTCAGCTCATCATTTCACAGCAAACGAGGAGGTGTAACTGGAGCGGCTGTTGAGTTGAATGGAGTTCAACAGACCCAAAGTTCCAGGGCCTGTAGATGGagcggggggagagggaggacgaGTGGTCCTGAGCCCACTGGATGAGATCCAGCCTGGGAGGAGTGAATGTGTGCTTGCAGAGCATGGAGGGTTAGGAGGGCTGTCTGCAACAGACACCACTAGCGCAGCCAAGACAGAGCCCGAAGACCCTGCAGGAGGATCTGGAAAGgttGCCCTGTACTCATTTGACAGCTCCCAGACAGCGAGAATGAGGACAAAGGCAAGAAGGAAAAGAAGAAGCTAAGGAAGGATTCCagttcatcctcctcctcctctgacagCAGCTCTTCAGACAGTGAAGTAAGCTAGGCAAATCTCTTAACATGTGACCTAATGTTCATCAGCATCACATCAAgatctgggcttgattgagcgTGTATTGTGCAATGGAACAAATAGAAAAGTCACAGAAGTGTgaaccccgcccatctggcagTCCAGCCTAAAGCTGCCTGTTTGGAATGAGTCACtgatcaaacagagagagagagagagagagagtacgttTTGGTTGGATTGGGCTGTGCGTTTAGTCTTAGGCAAATATCTTGTTCATGCGAAGCCAAAAGGAGACTTGAATCCCCCAAGGAAACCATTAAAGTGAAAGGAAGCCAAATTGCTTTATAGAGGGTGTTTTGACAAAGCTGGTATCTAACCTGAAACCAATCCAATGTTGCTTTAATCCTGGGAATACTCTTGTCAAGCGTATCCAAATGAGGTTCCTTGCCATGACACACAGCTTTATAAAGTGGATGTAGTCTCGTCTTACTACATTGGGCTCGGCAGTTTTTATTTGATAAAAATGTGACTAATGAAATTGCGTTATTTAATCTTACTCTTCTCACTTTTAGATGTCCAATCATTTAGATTTGTCTTTCATACAAGGATAAAAACGTGAAACACATTTTTGGGAAATTTGTCTTGGGAAATGAGTGCACCTGTTTATTTGAATAGGAAATCAGTTAATTTGTTAAGATTCTTGATTATCGATTGCAGGTACTTTGACGCCACAATAGAAACTCAACCCGCCAGCACTGTATGCTGGTCTGGAACAACGGCACCATGTTCTGTCGGCGTTAGTAAGCAGGAGAAACAGGTTTGCATGCTTGAGATATGTGGGGTTGAAAGACTAGCTGAAAGACTGAAAGCCACAATGAAACCCATACGGTAGGCATGCTGTGACCCTCGGGACCCATATCTAAGATAGGCATAGGACACCCAGTCATAACCTGTGGAGCTGGTGCCCACATGATCAGGGATCCTTACCGCTCTTGTGCTTACTCTCTGGAATATGCACCGATATGATCTGTCAAAACACTCAAACTAACAATTATGCATGAATAATAAAACGAGGATGGATACCACTGGGCTGGTTGGAACCTGAGAACCCATTCTTGTAGATGCTGACTCGTCATGCTTGTTTATTTCTGTTGAAGGACCCTTTTTTTTTTGTCACGGCAGGTCCTGGAATAAATCTGTGTTAACTACCCAATATGTCTTGAAAGGAAAGTACCCCCAGTGATCTAAAAGGAGATGTAGCCAATGTTCCTGCAGGCACTTTTGTCCAACctgtcagggtattgttttgTTCTGATATGTTAACGTTTAGGTGAAGGAGTCAAACTCGCTAGTGTAGTGACTTCTGTCTgcaggaagagaagaagaaaaggaagaaggAAAAGAAAGAAGATGCTGGGGATATCATAGTACACGGTGTAACCTTCATATCTGAGCCTGgcttcgtgccatgggtcatcactgcaggcttcgtgccatgggtcatcactg
>XR_005039381.1
CACAACACAACACTCACACCTTGGCCGATGGCCATATAGAAGGAGTTACTATCCTTGTAACTCAGTCAGCTCATCATTTCACAGCAAACGAGGAGGTGTAACTGGAGCGGCTGTTGAGTTGAATGGAGTTCAACAGACCCAAAGTTCCAGGGCCTGTAGATGGagcggggggagagggaggacgaGTGGTCCTGAGCCCACTGGATGAGATCCAGCCTGGGAGGAGTGAATGTGTGCTTGCAGAGCATGGAGGGTTAGGAGGGCTGTCTGCAACAGACACCACTAGCGCAGCCAAGACAGAGCCCGAAGACCCTGCAGGAGGATCTGGAAAGgttGCCCTGTACTCATTTGACAGCTCCCAGACAGCGAGAATGAGGACAAAGGCAAGAAGGAAAAGAAGAAGCTAAGGAAGGATTCCagttcatcctcctcctcctctgacagCAGCTCTTCAGACAGTGAAGTACTTTGACGCCACAATAGAAACTCAACCCGCCAGCACTGTATGCTGGTCTGGAACAACGGCACCATGTTCTGTCGGCGTTAGTAAGCAGGAGAAACAGGTTTGCATGCTTGAGATATGTGGGGTTGAAAGACTAGCTGAAAGACTGAAAGCCACAATGAAACCCATACGGTAGGCATGCTGTGACCCTCGGGACCCATATCTAAGATAGGCATAGGACACCCAGTCATAACCTGTGGAGCTGGTGCCCACATGATCAGGGATCCTTACCGCTCTTGTGCTTACTCTCTGGAATATGCACCGATATGATCTGTCAAAACACTCAAACTAACAATTATGCATGAATAATAAAACGAGGATGGATACCACTGGGCTGGTTGGAACCTGAGAACCCATTCTTGTAGATGCTGACTCGTCATGCTTGTTTATTTCTGTTGAAGGACCCTTTTTTTTTTGTCACGGCAGGTCCTGGAATAAATCTGTGTTAACTACCCAATATGTCTTGAAAGGAAAGTACCCCCAGTGATCTAAAAGGAGATGTAGCCAATGTTCCTGCAGGCACTTTTGTCCAACctgtcagggtattgttttgTTCTGATATGTTAACGTTTAGGTGAAGGAGTCAAACTCGCTAGTGTAGTGACTTCTGTCTgcaggaagagaagaagaaaaggaagaaggAAAAGAAAGAAGATGCTGGGGATATCATAGTACACGGTGTAACCTTCATATCTGAGCCTGgcttcgtgccatgggtcatcactgcaggcttcgtgccatgggtcatcactg
>TU2170319
GAGGAGGTGTAACTGGAGCGGCTGTTGAGTTGAATGGAGTTCAACAGACCCAAAGTTCCAGGGCCTGTAGATGGagcggggggagagggaggacgaGTGGTCCTGAGCCCACTGGATGAGATCCAGCCTGGGAGGAGTGAATGTGTGCTTGCAGAGCATGGAGGGTTAGGAGGGCTGTCTGCAACAGACACCACTAGCGCAGCCAAGACAGAGCCCGAAGACCCTGCAGGAGGATCTGGAAAGgttGCCCTGTACTCATTTGACAGCTCCCAGACAGCGAGAATGAGGACAAAGGCAAGAAGGAAAAGAAGAAGCTAAGGAAGGATTCCagttcatcctcctcctcctctgacagCAGCTCTTCAGACAGTGAAGTAAGCTAGGCAAATCTCTTAACATGTGACCTAATGTTCATCAGCATCACATCAAgatctgggcttgattgagcgTGTATTGTGCAATGGAACAAATAGAAAAGTCACAGAAGTGTgaaccccgcccatctggcagTCCAGCCTAAAGCTGCCTGTTTGGAATGAGTCACtgatcaaacagagagagagagagagagagagtacgttTTGGTTGGATTGGGCTGTGCGTTTAGTCTTAGGCAAATATCTTGTTCATGCGAAGCCAAAAGGAGACTTGAATCCCCCAAGGAAACCATTAAAGTGAAAGGAAGCCAAATTGCTTTATAGAGGGTGTTTTGACAAAGCTGGTATCTAACCTGAAACCAATCCAATGTTGCTTTAATCCTGGGAATACTCTTGTCAAGCGTATCCAAATGAGGTTCCTTGCCATGACACACAGCTTTATAAAGTGGATGTAGTCTCGTCTTACTACATTGGGCTCGGCAGTTTTTATTTGATAAAAATGTGACTAATGAAATTGCGTTATTTAATCTTACTCTTCTCACTTTTAGATGTCCAATCATTTAGATTTGTCTTTCATACAAGGATAAAAACGTGAAACACATTTTTGGGAAATTTGTCTTGGGAAATGAGTGCACCTGTTTATTTGAATAGGAAATCAGTTAATTTGTTAAGATTCTTGATTATCGATTGCAGGTACTTTGACGCCACAATAGAAACTCAACCCGCCAGCACTGTATGCTGGTCTGGAACAACGGCACCATGTTCTGTCGGCGTTAGTAAGCAGGAGAAACAGGTTTGCATGCTTGAGATATGTGGGGTTGAAAGACTAGCTGAAAGACTGAAAGCCACAATGAAACCCATACGGTAGGCATGCTGTGACCCTCGGGACCCATATCTAAGATAGGCATAGGACACCCAGTCATAACCTGTGGAGCTGGTGCCCACATGATCAGGGATCCTTACCGCTCTTGTGCTTACTCTCTGGAATATGCACCGATATGATCTGTCAAAACACTCAAACTAACAATTATGCATGAATAATAAAACGAGGATGGATACCACTGGGCTGGTTGGAACCTGAGAACCCATTCTTGTAGATGCTGACTCGTCATGCTTGTTTATTTCTGTTGAAGGACCCTTTTTTTTTTGTCACGGCAGGTCCTGGAATAAATCTGTGTTAACTACCCAATATGTCTTGAAAGGAAAGTACCCCCAGTGATCTAAAAGGAGATGTAGCCAATGTTCCTGCAGGCACTTTTGTCCAACctgtcagggtattgttttgTTCTGATATGTTAACGTTTAGGTGAAGGAGTCAAACTCGCTAGTGTAGTGACTTCTGTCTgcaggaagagaagaagaaaaggaagaaggAAAAGAAAGAAGATGCTGGGGATATCATAGTACACGGTGTAACCTTCATATCTGAGCCTGGTGAGTGATGCCTGtgtttatttgaccttttatttaactaggcaagacagttaagaacaaattcttattttcaatgacgtcctagagaacagtgggttatctgccttgttcaggggcagaacgacagatttttaccttgtcagcttggggattcgaagtccaacgctctaaccactaggttacctgccgccccatgtgtGTTCGTGATTGTGTACTGAAAGCTACGCACTGTAGTAAATGACTGTCTTTATACACAAATGACCCACCTtgtaacca

Function

NR:

description
PREDICTED: cylicin-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039380.1 False 1951 mRNA 0.45 5 8076117 8080686
XR_005039381.1 False 1255 mRNA 0.48 6 8076117 8080686
TU2170319 True 2087 TUCP 0.44 4 8076206 8079986

Neighbor

gene id symbol gene type direction distance location
LOC110503662 LOC106612648 coding upstream 14882 8035977 ~ 8061235 (+)
LOC110503660 LOC106612650 coding upstream 87661 7953859 ~ 7988456 (+)
LOC110503657 LOC106612651 coding upstream 148675 7899888 ~ 7927442 (+)
LOC110503658 LOC106612652 coding upstream 174604 7875714 ~ 7901513 (+)
LOC110503310 LOC106580794 coding upstream 203815 7765942 ~ 7872302 (+)
LOC110503664 NA coding downstream 4190 8084876 ~ 8087118 (+)
LOC110503665 LOC106612643 coding downstream 9869 8090555 ~ 8196891 (+)
LOC110503312 LOC106612642 coding downstream 174708 8255380 ~ 9272888 (+)
LOC110503670 NA coding downstream 1252487 9333173 ~ 9336647 (+)
LOC110503674 LOC106612636 coding downstream 1327354 9408040 ~ 9439078 (+)
G1897370 NA non-coding upstream 64917 8010780 ~ 8011200 (+)
G1897329 NA non-coding upstream 164428 7910887 ~ 7911689 (+)
G1897306 NA non-coding upstream 248638 7827230 ~ 7827479 (+)
G1897299 NA non-coding upstream 254665 7821221 ~ 7821452 (+)
G1897516 NA non-coding downstream 205746 8286432 ~ 8292757 (+)
G1897682 NA non-coding downstream 419036 8499722 ~ 8555766 (+)
G1897832 NA non-coding downstream 630101 8710787 ~ 8739898 (+)
G1897849 NA non-coding downstream 648371 8729057 ~ 8729407 (+)
LOC110503629 LOC106612674 other upstream 747806 7316925 ~ 7350759 (+)
G1896931 NA other upstream 1057559 7017795 ~ 7018558 (+)
G1896894 NA other upstream 1134561 6940416 ~ 6941556 (+)
G1895266 LOC106612719 other upstream 2553252 5521415 ~ 5522865 (+)
bl1s3 bl1s3 other upstream 2556085 5518991 ~ 5520163 (+)
G1898300 NA other downstream 1276365 9357051 ~ 9359164 (+)
G1898315 cep164 other downstream 1362608 9443294 ~ 9444057 (+)
G1898293 LOC106612633 other downstream 1439246 9519932 ~ 9525546 (+)
G1898441 NA other downstream 1507354 9588040 ~ 9589691 (+)
G1898545 LOC106612623 other downstream 1767786 9848472 ~ 9849339 (+)

Expression


Co-expression Network