LOC110503678 (LOC106612633)


Basic Information

Item Value
gene id LOC110503678
gene name LOC106612633
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9519930 ~ 9525556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961787.1
CATTTCAGCTTGTCTGGTCCTTTTAAGCCAGCACTTTTCCGAGGGAGGACTTTGCTGGAGCTAGAAGTATACaaacagtcagtcacacacacacggacacacacacacctcctgacCCAGCGCTTGTACAGAGGAAAGACTCTTCGCTACATACTTTAACACAGGTCCCCAGGTAGGCATGGCCAACAAAGGTCCATCTTATGGCATGAGCCGTGTGGTGCAGGACAAGATTGACAAGAAGTACGACGCTGAGGTGGAGGAGCTTTTGGTGCAGTGGATTGTGGCCCAGTGTGGATCTGGAGTTGGGAAGCCCGAATCTGGCAAACTGGGCTTCCAGGACTGGCTTAAGGACGGATGTGTCCTGAGTGAGCTCATTAACAGCCTGCATAAGGACAACAAGCCCATCAAGAAGATAGCCAGCTCAAGCATGGCCTTCAAACAGATGGAGCAGATCTCACAGTTCCTAACTGCTGCCGAGAGCTTCGGTGTCATCAAGACCGACATGTTCCAGACCGTGGACCTCTGGGAAGGGAAGGATTTGGCTGCAGTCCAGAGGACACTGATGTCCCTCGGCAGCGTGGCTGTCACCAAGGATGACGGCAATTACCGCGGCGACCCCAACTGGTTCTTCAAGAAAGCCCAGGAGAACCGGAGGGAGTTCACAGACGACCAGTTGAAGGCGGGGAAGGGTGTGATTGGCCTGCAGATGGGCTCCAACAAAGGGGCGAGCCAGACTGGCATGTCGTACGGGGCCACCCGACAGATCCAATAATAACAACCAAACCACTGACCCTTGTCctttcccctcccttctccaccACACCCTGCACTGCCCTCTCAATCCCCCTTCGCCCTCTCACTGCAGCTACGACAGGCCCCATAGATGAAGTCTTAATGCCTCAAATCAACTTTATCCCAGTGTAGTAGGAACAGTCTCACTAGTATCACACAACACTATGACCAGCCCAATATTACAACCCAAATCTACACTGCAAATACCATATGTGAAATGTGAGTCTTAAGGTGAAAGGGGCAACATACATATACAGCTGTCAATCACTCATCGTCAAACGCAATTCTCATGTTTACATGAGACTGATATCTGAATCATAGAGAAGGCGCTGAAGTGACCAAACTACGCCTTCTTAGTACAAGGACATTCTATCCAAATGTAGAAactgagagattgagagattgcTTGAGGTCGTTTGAAAAATGCCAAATAAAAGGAAGGAAATGAGGTTGAAGTTCA
>XM_021582131.2
TCATTTCAGCTTGTCTGGTCCTTTTAAGCCAGCACTTTTCCGAGGGAGGACTTTGCTGGAGCTAGAAGTATACaaacagtcagtcacacacacacggacacacacacacctcctgacCCAGCGCTTGTACAGAGGAAAGACTCTTCGCTACATACTTTAACACAGCACAACGTGGTATCCTGACATCAAGATGGCCAACAAGGGTCCCCAGGTAGGCATGGCCAACAAAGGTCCATCTTATGGCATGAGCCGTGTGGTGCAGGACAAGATTGACAAGAAGTACGACGCTGAGGTGGAGGAGCTTTTGGTGCAGTGGATTGTGGCCCAGTGTGGATCTGGAGTTGGGAAGCCCGAATCTGGCAAACTGGGCTTCCAGGACTGGCTTAAGGACGGATGTGTCCTGAGTGAGCTCATTAACAGCCTGCATAAGGACAACAAGCCCATCAAGAAGATAGCCAGCTCAAGCATGGCCTTCAAACAGATGGAGCAGATCTCACAGTTCCTAACTGCTGCCGAGAGCTTCGGTGTCATCAAGACCGACATGTTCCAGACCGTGGACCTCTGGGAAGGGAAGGATTTGGCTGCAGTCCAGAGGACACTGATGTCCCTCGGCAGCGTGGCTGTCACCAAGGATGACGGCAATTACCGCGGCGACCCCAACTGGTTCTTCAAGAAAGCCCAGGAGAACCGGAGGGAGTTCACAGACGACCAGTTGAAGGCGGGGAAGGGTGTGATTGGCCTGCAGATGGGCTCCAACAAAGGGGCGAGCCAGACTGGCATGTCGTACGGGGCCACCCGACAGATCCAATAATAACAACCAAACCACTGACCCTTGTCctttcccctcccttctccaccACACCCTGCACTGCCCTCTCAATCCCCCTTCGCCCTCTCACTGCAGCTACGACAGGCCCCATAGATGAAGTCTTAATGCCTCAAATCAACTTTATCCCAGTGTAGTAGGAACAGTCTCACTAGTATCACACAACACTATGACCAGCCCAATATTACAACCCAAATCTACACTGCAAATACCATATGTGAAATGTGAGTCTTAAGGTGAAAGGGGCAACATACATATACAGCTGTCAATCACTCATCGTCAAACGCAATTCTCATGTTTACATGAGACTGATATCTGAATCATAGAGAAGGCGCTGAAGTGACCAAACTACGCCTTCTTAGTACAAGGACATTCTATCCAAATGTAGAAactgagagattgagagattgcTTGAGGTCGTTTGAAAAATGCCAAATAAAAGGAAGGAAATGAGGTTGAAGTTCA
>XM_036961788.1
GTCATTTCAGCTTGTCTGGTCCTTTTAAGCCAGCACTTTTCCGAGGGAGGACTTTGCTGGAGCTAGAAGTATACaaacagtcagtcacacacacacggacacacacacacctcctgacCCAGCGCTTGTACAGAGGAAAGACTCTTCGCTACATACTTTAACACAGTGGGAAAGGGTCCCCAGGTAGGCATGGCCAACAAAGGTCCATCTTATGGCATGAGCCGTGTGGTGCAGGACAAGATTGACAAGAAGTACGACGCTGAGGTGGAGGAGCTTTTGGTGCAGTGGATTGTGGCCCAGTGTGGATCTGGAGTTGGGAAGCCCGAATCTGGCAAACTGGGCTTCCAGGACTGGCTTAAGGACGGATGTGTCCTGAGTGAGCTCATTAACAGCCTGCATAAGGACAACAAGCCCATCAAGAAGATAGCCAGCTCAAGCATGGCCTTCAAACAGATGGAGCAGATCTCACAGTTCCTAACTGCTGCCGAGAGCTTCGGTGTCATCAAGACCGACATGTTCCAGACCGTGGACCTCTGGGAAGGGAAGGATTTGGCTGCAGTCCAGAGGACACTGATGTCCCTCGGCAGCGTGGCTGTCACCAAGGATGACGGCAATTACCGCGGCGACCCCAACTGGTTCTTCAAGAAAGCCCAGGAGAACCGGAGGGAGTTCACAGACGACCAGTTGAAGGCGGGGAAGGGTGTGATTGGCCTGCAGATGGGCTCCAACAAAGGGGCGAGCCAGACTGGCATGTCGTACGGGGCCACCCGACAGATCCAATAATAACAACCAAACCACTGACCCTTGTCctttcccctcccttctccaccACACCCTGCACTGCCCTCTCAATCCCCCTTCGCCCTCTCACTGCAGCTACGACAGGCCCCATAGATGAAGTCTTAATGCCTCAAATCAACTTTATCCCAGTGTAGTAGGAACAGTCTCACTAGTATCACACAACACTATGACCAGCCCAATATTACAACCCAAATCTACACTGCAAATACCATATGTGAAATGTGAGTCTTAAGGTGAAAGGGGCAACATACATATACAGCTGTCAATCACTCATCGTCAAACGCAATTCTCATGTTTACATGAGACTGATATCTGAATCATAGAGAAGGCGCTGAAGTGACCAAACTACGCCTTCTTAGTACAAGGACATTCTATCCAAATGTAGAAactgagagattgagagattgcTTGAGGTCGTTTGAAAAATGCCAAATAAAAGGAAGGAAATGAGGTTGAAGTTCA

Function

NR:

description
transgelin-like isoform X1

GO: NA

KEGG:

id description
K20526 TAGLN; transgelin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961787.1 False 1252 mRNA 0.50 5 9519930 9525554
XM_021582131.2 False 1291 mRNA 0.50 6 9519930 9525555
XM_036961788.1 True 1263 mRNA 0.50 5 9519930 9525556

Neighbor

gene id symbol gene type direction distance location
LOC110503673 cep164 coding downstream 62073 9439390 ~ 9457857 (-)
LOC110503671 LOC106612637 coding downstream 118541 9357011 ~ 9401389 (-)
LOC110503672 tmm25 coding downstream 163929 9347752 ~ 9356001 (-)
LOC110503669 LOC100136515 coding downstream 173165 9338732 ~ 9346765 (-)
LOC110503667 LOC106612638 coding downstream 189595 9309050 ~ 9330335 (-)
cbln18 LOC106612737 coding upstream 8046 9533602 ~ 9536466 (-)
cbln20 LOC106612736 coding upstream 19249 9544805 ~ 9546072 (-)
LOC110503680 LOC106612628 coding upstream 45311 9570867 ~ 9579939 (-)
LOC110503681 LOC106612627 coding upstream 61641 9587197 ~ 9593083 (-)
LOC110503684 LOC106592295 coding upstream 80769 9606325 ~ 9608246 (-)
G1900844 NA non-coding downstream 799 9516559 ~ 9519131 (-)
G1900807 NA non-coding downstream 11641 9507692 ~ 9508289 (-)
G1900818 NA non-coding downstream 44352 9475367 ~ 9475578 (-)
G1900816 NA non-coding downstream 47456 9471700 ~ 9472474 (-)
G1900715 NA non-coding downstream 48833 9468967 ~ 9471097 (-)
G1900855 NA non-coding upstream 3124 9528680 ~ 9528896 (-)
G1900872 NA non-coding upstream 33610 9559166 ~ 9559405 (-)
G1900875 NA non-coding upstream 40790 9566346 ~ 9566751 (-)
G1900884 NA non-coding upstream 70026 9595582 ~ 9595911 (-)
G1900901 NA non-coding upstream 88502 9614058 ~ 9614979 (-)
G1899875 NA other downstream 1471956 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3059865 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3288122 6181377 ~ 6231808 (-)
G1896030 NA other downstream 3650712 5868896 ~ 5869218 (-)
G1894611 NA other downstream 5165994 4353578 ~ 4353936 (-)
G1901072 LOC107388308 other upstream 479816 10005372 ~ 10012354 (-)
G1901206 NA other upstream 679664 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 873486 10399042 ~ 10399857 (-)
G1901405 NA other upstream 1091368 10616924 ~ 10617481 (-)

Expression


Co-expression Network