cbln18 (LOC106612737)


Basic Information

Item Value
gene id cbln18
gene name LOC106612737
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9533602 ~ 9536466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581792.2
GTTATCTAATGACATAAACCATCACAATACTTTGACCTCCATTCTCTGATTCGCCTCAAAGGAAATGGATAGCATCTGAAGAACCGGGTCGCTCAACAGGGGACATGTGACAGTCAGCAAAGCTGACAAAACAACAATCAATACTGTATATGATGGTCAACAATAAGTGGAGAACAGAAACTCTCTCCACCACCTCCGCCCACACCCAGGTGTGAGAACCAGGTGACACTATATCTGGGTCTCCTGATCCACTGATAATGCCTCTCAATGAGACAGCAATAAACCCACGTATATTTGGGAAACGCCATTCAAAATCCTCGATAACAATCTATTCAATAGTAGCACGAAACACTGTGTCCACTGGGAGTTTTAGGGAAACCAGACACCGGTGTCCTTTTAAAAACCTACCATTTTCACACAACGGCAAAGATGAGCTGGCTTCTTACAGGACCTCTCATTCACACCCAAGGAAGAAACACTGACATGGCATTGTCTTTAACTTGTCACAATGGGAGACTATTGAATGTGTTCTAGGTGCCCTCCGTTAGGAACCCTACTTCAGCCTGCATTTTTGGGGTTGGGGTTTGTGTACATGGAATGGCCGTGGAGCTTTTCTCATCCATCTGCGGAAGGGTGGGACCTCAGACAGGGAACCAATAGCACGGCAGCACCACCCCGCCTGCATTAAGCTCCTACATAGTCTTAGGAGGATTCCCAAGTCTGCTCACCTACTGTAAGAACAAGGTAACAAGACGTGGGCTTCTTACAGCGATACAATAATGAAGTTTGTTGCAGTGTCCGCTCTGTGCCTGTGGGGGTTGCTGTGCCTCTGTGCCAGTGTGAAGGCCGTGGGGACTTTAGAGCTGATGCGAGATGCAGCGGTGGGCTGGACTGGGGTCCTGCCCTGTGGGAAGTGGGACTGTGAGTGTGCTTTCAACAGCCAGCGGGGCTGCTGCTGTGTGGCCAATGAGATGAGTATGCTGGAGGACCACACCTTCATGCGCATGGTGGACATGTGGGAGCAGCTCACCCGATTGGACAACGACATCAAGGAAGTCACAGGCAACAATAAGATTGCGTTCACCGCGGCAATGAGATCTCGAAGCGACTGCTTCGGCCCCTTCACTAGCAACGTGCCAATCCGCTACTACGCCATCTCTCTCAACCAGGGTAACGGATACAATGACGCTCTGGGTACCTTCACCGCCCCCCGCGCCGGCCTCTACTCCTTCTCCTTCACGGCCTACTCCAACGTGGGCTTGGATGGCGAGCGTCTTTACCACAAGGTGCAGCTGATAAAGAACAACGAGGTGGTGGCCTCTGTGTGGGAGGACAACCGGGAGGACACGGAGGACAGCGCCACCCATTCTGTGCTGGTGTCTCTGCGCCAGGGCGACCAGGTGTACGTGGAGCTGCTCTCCGGCAGGAGTCTGTGTGGCAACACCAAGGAGTACAACAGGTTCAGCGGATACCTGGTCTACCCCTTCACACAGGAGTAGAGGACAGAgttacacacacatgaacacacacatgcacaaacaaatGTGAAAACACACGTACATGCATGAATGCACACAAGCACATACATGCATGCACAAAGACATACTGATatggcactcacacacacatgacgTTCcaagtgtgtgtattgtgtgtgtgtgtgtttgtgcacaatTGTAACCAATGATATTCCATGTACAGTTAAATTTAGACAGTCTGCCTGTGAAATAGTATTGCTTTGAACAAAATAAAAGCTGATTCGTTACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581792.2 True 1767 mRNA 0.50 5 9533602 9536466

Neighbor

gene id symbol gene type direction distance location
LOC110503678 LOC106612633 coding downstream 8046 9519930 ~ 9525556 (-)
LOC110503673 cep164 coding downstream 75745 9439390 ~ 9457857 (-)
LOC110503671 LOC106612637 coding downstream 132213 9357011 ~ 9401389 (-)
LOC110503672 tmm25 coding downstream 177601 9347752 ~ 9356001 (-)
LOC110503669 LOC100136515 coding downstream 186837 9338732 ~ 9346765 (-)
cbln20 LOC106612736 coding upstream 8339 9544805 ~ 9546072 (-)
LOC110503680 LOC106612628 coding upstream 34401 9570867 ~ 9579939 (-)
LOC110503681 LOC106612627 coding upstream 50731 9587197 ~ 9593083 (-)
LOC110503684 LOC106592295 coding upstream 69859 9606325 ~ 9608246 (-)
LOC110503686 LOC106592295 coding upstream 116104 9652570 ~ 9654648 (-)
G1900855 NA non-coding downstream 4706 9528680 ~ 9528896 (-)
G1900844 NA non-coding downstream 14471 9516559 ~ 9519131 (-)
G1900807 NA non-coding downstream 25313 9507692 ~ 9508289 (-)
G1900818 NA non-coding downstream 58024 9475367 ~ 9475578 (-)
G1900816 NA non-coding downstream 61128 9471700 ~ 9472474 (-)
G1900872 NA non-coding upstream 22700 9559166 ~ 9559405 (-)
G1900875 NA non-coding upstream 29880 9566346 ~ 9566751 (-)
G1900884 NA non-coding upstream 59116 9595582 ~ 9595911 (-)
G1900901 NA non-coding upstream 77592 9614058 ~ 9614979 (-)
G1900903 NA non-coding upstream 81082 9617548 ~ 9629252 (-)
G1899875 NA other downstream 1485628 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3073537 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3301794 6181377 ~ 6231808 (-)
G1896030 NA other downstream 3664384 5868896 ~ 5869218 (-)
G1894611 NA other downstream 5179666 4353578 ~ 4353936 (-)
G1901072 LOC107388308 other upstream 468906 10005372 ~ 10012354 (-)
G1901206 NA other upstream 668754 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 862576 10399042 ~ 10399857 (-)
G1901405 NA other upstream 1080458 10616924 ~ 10617481 (-)

Expression


Co-expression Network