cbln20 (LOC106612736)


Basic Information

Item Value
gene id cbln20
gene name LOC106612736
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9544805 ~ 9546072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581793.2
ATGAGAGCTATCGTACTGCTGTGCTTGTTGGGGGCCGCTCTGGCCAATGAATACAGCTGGAATAGCCCTGGAGAGACAACAAAGGACCCCAAAACAGAGAACTTGTGTCTGGCGGACCAGGCCTCCTGCGGCTGCTGCCTGATGCAGAAGCAGATGTGGAGGATGGAGCAATTTTTCAACATGAGTCTGAACGAGCTGCAGAAGGGCCTGGAGAAGGCAAAGGCTGTGGTCAACAATGTCCGCGCTAGCCGCAGTGCCTTCTCCGTGGCCCTGACCAACACACGCCGTTGCGAGGGCCCTTTCCGTGAAGCTAAGACCGTTGTCTACCAGTACATCTTCGTCAACCTAGGCGAGGGCTACAACAACCGCACCGGCATCTTCACTGTGCCCCGCTCCGGTGTCTACAGCCTGGCCCTGACCGTGTACAGCGACTCGGGCGCTCCCGGCGCCAACCTGGCCGCGTGCGCCAACCTGATGGTGAACGGGCGCCAGGTGGCGGGCTGCAGTGAGCAGAACCAGCAGGACCAAGAGGACAGCACCACCACGGTGATGGCCATCCAGCTGCAGGCCGGGGACAAGTTGTCCGTCACACTGCCCATCGGATGCTTCCTGTGCGACGAACAGAGCCACTACAACACCTTTTCTGGCTTCCTGCTCTACGCCACCGACTAAGTCTAAGCTGAGGCTGCTGAGGTTACCACACCCCACCACCTTCGCCCTGTCTTTAACTCCTTTGCCCAGTCCTGCTTCTGGAAGGGAACTTGG

Function

NR:

description
cerebellin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581793.2 True 765 mRNA 0.59 4 9544805 9546072

Neighbor

gene id symbol gene type direction distance location
cbln18 LOC106612737 coding downstream 8339 9533602 ~ 9536466 (-)
LOC110503678 LOC106612633 coding downstream 19249 9519930 ~ 9525556 (-)
LOC110503673 cep164 coding downstream 86948 9439390 ~ 9457857 (-)
LOC110503671 LOC106612637 coding downstream 143416 9357011 ~ 9401389 (-)
LOC110503672 tmm25 coding downstream 188804 9347752 ~ 9356001 (-)
LOC110503680 LOC106612628 coding upstream 24795 9570867 ~ 9579939 (-)
LOC110503681 LOC106612627 coding upstream 41125 9587197 ~ 9593083 (-)
LOC110503684 LOC106592295 coding upstream 60253 9606325 ~ 9608246 (-)
LOC110503686 LOC106592295 coding upstream 106498 9652570 ~ 9654648 (-)
dpf1 dpf1 coding upstream 111899 9657971 ~ 9730313 (-)
G1900855 NA non-coding downstream 15909 9528680 ~ 9528896 (-)
G1900844 NA non-coding downstream 25674 9516559 ~ 9519131 (-)
G1900807 NA non-coding downstream 36516 9507692 ~ 9508289 (-)
G1900818 NA non-coding downstream 69227 9475367 ~ 9475578 (-)
G1900816 NA non-coding downstream 72331 9471700 ~ 9472474 (-)
G1900872 NA non-coding upstream 13094 9559166 ~ 9559405 (-)
G1900875 NA non-coding upstream 20274 9566346 ~ 9566751 (-)
G1900884 NA non-coding upstream 49510 9595582 ~ 9595911 (-)
G1900901 NA non-coding upstream 67986 9614058 ~ 9614979 (-)
G1900903 NA non-coding upstream 71476 9617548 ~ 9629252 (-)
G1899875 NA other downstream 1496831 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3084740 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3312997 6181377 ~ 6231808 (-)
G1896030 NA other downstream 3675587 5868896 ~ 5869218 (-)
G1894611 NA other downstream 5190869 4353578 ~ 4353936 (-)
G1901072 LOC107388308 other upstream 459300 10005372 ~ 10012354 (-)
G1901206 NA other upstream 659148 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 852970 10399042 ~ 10399857 (-)
G1901405 NA other upstream 1070852 10616924 ~ 10617481 (-)

Expression


Co-expression Network