LOC110503680 (LOC106612628)


Basic Information

Item Value
gene id LOC110503680
gene name LOC106612628
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9570867 ~ 9579939 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961834.1
TGCGTCTTTTATAACAAATTACTCACCCTCAACAAAACAAGAACAGACTGCACATCtgcctacctcacacacacagacacgccatGACTTAATAAAGTGATGAAAGGAGAAACACTTGGGGGCACTTTCACCGGATTTTAAACCTGAAATTGGTGGACTAAATATTTTGTTCTTGTGGGATTCTTTTACATTGTGGATGTATATAGACATATATTTTTGGTATTCGTAACAGAATTATGACTCAATCACTCTGGGGTGATACAGGCTTTTTTTATCTGTCACATTGAGCTTTCCTGCTGAAACGTTTCAAAGTCACCTTTTCTCCTTTCGCATTCCAACAAACATGTTGTTGATGAGCTCTTAACAACAACACTTGACTACACTGGAGTAGGTCTTAGGATGTGGGTGCTCAATGTTTCCCTGGAAGACTGAAACGGAACTTTAACCAAAGATGACAGACCTCACCGAAGTATCTGTTTACTCAGAATCCTCGGACATTTACAAGAATGTTTTCTGCAACCCTGCGTTTGAGCTTGATGGTGAGCGTGAGGAGAAAGTGGAAGGATTCAGTTCTGCCAGTACTGCCATGGCCCTAGAGCCAGTAAAGAGCCCAGCTGCAATCAtccgaggtgtgttcagtgtgtgtgtgatgcgtcTGCGGGGCCCGTGGTGTAGCTGGGGGGCCGTGGTGGTCTCTGTTGCAGCTGTGCTCCTGGTAGCAGCTCTGGGCCTGGCACTGGTGCTCATCTTCACACAGCTAAAGGGGCAGAGTGTGGATGGGGAAGTGGTGTCGACCAATCCCCTGGACTTGTTGACTGGAGATGGACTGCCTCGTGATCTACCCACAACCTCCACCAACCACAGTCAGAGGGACATTACAGTGGCCCCACAGCCAGCCAGATACCCTACCCCTGAAACTAGTTGTGGGGGTGTATTGACAGCCTCAGAGGGCAGCTTTAGCTCCCCCAACCACCCTGGATCGTATCCCCCGGACTCGCTGTGTGTCTGGGTGATACGGGCGTGCCCTCCATCCCTGGTCCAGATCCATGTGTCCTCTCTGACCATAGAAGGACCATCCCCCTGCCTCTTTGACTGGCTGGAGGTTCAGGAGGAGACGGAGCAGCCTTCTGTTGTCACCAGGTTCTGCGGCAACGTGGCACCCCCTACTGTGAACACCAACAGCAGCACTGTGTGGGTGACCTTCCGCTCTGACGGGAGCATCGGAGGCAGTGGCTTTATCGCCCAGTACCACGCCATCACACTTGAACAGAAGAGCTGCTCCAGGGAGGAGTTTATGTGTGACCACGGGCGCTGCATCCtgcctgtgtcagtgtgtgacGGTCAGCCCAACTGTcatgacctctctgatgaggcCAACTGCAGCCACAAGCACAAAGAGTGTGGGGGCCAAAAGACTGGACTCTACGGCTACCTGGCGAGTCCAAACCACCCAAAGCCTTACCCTCAACAACAGTTGTGCACATGGCAGATCTCTGTGGAGGAGGGTCATGTGATCAGGCTGAGTTTCCATAACTTCAGTCTGGAGACTCAGGACGTGTGTGAGTTTGACTATGTAGAGGTGCGTGACAGTGCTGATACCGGGGCCGGCAGAGTACTCGGACGGTACTGTGGCACCAGCCTGCCTCCTGAGCTGACCTCCTCTGGGCCTCAGATAACCGTGGTATTTGTGGCTGACGAGGGTGTGGCAGACAGTGGCTTCAACGCGTCCTACCAGGCCATCTCCCTCTCTGAgaGAACATGCAGTCCTACTCAGTTTGCCTGCAGTAGTGGAGAGTGCCTGCACCAGGAGTGGCTGTGTGATGGCTGGACTGACTGTGCAGACGGGACAGATGAGCACAACTGTGACAACTCGACCTATCCCACTTTCAGCTTGTCCTGTGAGCCCATCGAGGTGGAGATGtgtcagggcctgagctacaacCACACCTCCTTCCCCAACATTTGGCTGTCCATCGCTGACCAGAGAGAGGCAGCCACGCTGCTCCGTCAGTACATGGTGCTGATGGAGCTGGCGTGTTTCCAGCCCCTGCGCAGGCTGGTGTGTGGGATGTTCATGCCCCACTGCAGCCCTCAGGGTGGGGTGCTGCAGCCCTGCCGCTCAGTGTGCTCCTGGGCAGCGCAGCAGTGTAGTCAGGCCCTGGACGTCTTCACCTTCAGCTGGCCCTTCAACTGCCACCTGCTACCTGACTCCCAAGACCCTATGGAGTGCTCCAGCCCTTGAAGTATAGCACCTGCCCCATTCATTTGCTACAGTACAACCATAGTTATGAGATGAATCCAACACAGGACTATAAGAACTCTTAAGAATACCATCAAAGCTCCAATCTTTTCAAGGAGTCTTGCAGTCTCACTTGGACACTGATCATCATCTAAGGACCTTTACATGCAAAAATAATCACAATGTTGCACTTCTGCAGACGCTATGGTTCTAGCCTTGTACAGCATAATACAGATGTATGGAACAGAACCGGTTGGAGTTAACATGGGAATAGAAAATAAATGTACATATTAATAAAAACAATGCTGATT
>TU2174075
CAGTTGTGCACATGGCAGATCTCTGTGGAGGAGGGTCATGTGATCAGGCTGAGTTTCCATAACTTCAGTCTGGAGACTCAGGACGTGTGTGAGTTTGACTATGTAGAGGTGCGTGACAGTGCTGATACCGGGGCCGGCAGAGTACTCGGACGGTACTGTGGCACCAGCCTGCCTCCTGAGCTGACCTCCTCTGGGCCTCAGATAACCGTGGTATTTGTGGCTGACGAGGGTGTGGCAGACAGTGGCTTCAACGCGTCCTACCAGGCCATCTCCCTCTCTGAgaGAACATGCAGTCCTACTCAGTTTGCCTGCAGTAGTGGAGAGTGCCTGCACCAGGAGTGGCTGTGTGATGGCTGGACTGACTGTGCAGACGGGACAGATGAGCACAACTGTGACAACTCGACCTATCCCACTTTCAGCTTGTCCTGTGAGCCCATCGAGGTGGAGATGtgtcagggcctgagctacaacCACACCTCCTTCCCCAACATTTGGCTGTCCATCGCTGACCAGAGAGAGGCAGCCACGCTGCTCCGTCAGTACATGGTGCTGATGGAGCTGGCGTGTTTCCAGCCCCTGCGCAGGCTGGTGTGTGGGATGTTCATGCCCCACTGCAGCCCTCAGGGTGGGGTGCTGCAGCCCTGCCGCTCAGTGTGCTCCTGGGCAGCGCAGCAGTGTAGTCAGGCCCTGGACGTCTTCACCTTCAGCTGGCCCTTCAACTGCCACCTGCTACCTGACTCCCAAGACCCTATGGAGTGCTCCAGCCCTTGAAGTATAGCACCTGCCCCATTCATTTGCTACAGTACAACCATAGTTATGAGATGAATCCAACACAGGACTATAAGAACTCTTAAGAATACCATCAAAGCTCCAATCTTTTCAAGGAGTCTTGCAGTCTCACTTGGACACTGATCATCATCTAAGGACCTTTACATGCAAAAATAATCACAATGTTGCACTTCTGCAGACGCTATGGTTCTAGCCTTGTACAGCATAATACAGATGTATGGAACAGAACCGGTTGGAGTTAACATGGGAATAGAAAATAAATGTACATATTAATAAAAACAATGCT

Function

NR:

description
membrane frizzled-related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961834.1 False 2550 mRNA 0.52 13 9570867 9579939
TU2174075 True 1075 TUCP 0.53 5 9570871 9574149

Neighbor

gene id symbol gene type direction distance location
cbln20 LOC106612736 coding downstream 24795 9544805 ~ 9546072 (-)
cbln18 LOC106612737 coding downstream 34401 9533602 ~ 9536466 (-)
LOC110503678 LOC106612633 coding downstream 45311 9519930 ~ 9525556 (-)
LOC110503673 cep164 coding downstream 113010 9439390 ~ 9457857 (-)
LOC110503671 LOC106612637 coding downstream 169478 9357011 ~ 9401389 (-)
LOC110503681 LOC106612627 coding upstream 7258 9587197 ~ 9593083 (-)
LOC110503684 LOC106592295 coding upstream 26386 9606325 ~ 9608246 (-)
LOC110503686 LOC106592295 coding upstream 72631 9652570 ~ 9654648 (-)
dpf1 dpf1 coding upstream 78032 9657971 ~ 9730313 (-)
LOC110503314 LOC106612624 coding upstream 191485 9771424 ~ 9846389 (-)
G1900875 NA non-coding downstream 4116 9566346 ~ 9566751 (-)
G1900872 NA non-coding downstream 11462 9559166 ~ 9559405 (-)
G1900855 NA non-coding downstream 41971 9528680 ~ 9528896 (-)
G1900844 NA non-coding downstream 51736 9516559 ~ 9519131 (-)
G1900807 NA non-coding downstream 62578 9507692 ~ 9508289 (-)
G1900884 NA non-coding upstream 15643 9595582 ~ 9595911 (-)
G1900901 NA non-coding upstream 34119 9614058 ~ 9614979 (-)
G1900903 NA non-coding upstream 37609 9617548 ~ 9629252 (-)
G1900922 NA non-coding upstream 102489 9682428 ~ 9697449 (-)
G1900945 NA non-coding upstream 151755 9731694 ~ 9731937 (-)
G1899875 NA other downstream 1522893 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3110802 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3339059 6181377 ~ 6231808 (-)
G1896030 NA other downstream 3701649 5868896 ~ 5869218 (-)
G1894611 NA other downstream 5216931 4353578 ~ 4353936 (-)
G1901072 LOC107388308 other upstream 425433 10005372 ~ 10012354 (-)
G1901206 NA other upstream 625281 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 819103 10399042 ~ 10399857 (-)
G1901405 NA other upstream 1036985 10616924 ~ 10617481 (-)
G1901516 NA other upstream 1273892 10853831 ~ 10856437 (-)

Expression


Co-expression Network