LOC110503681 (LOC106612627)


Basic Information

Item Value
gene id LOC110503681
gene name LOC106612627
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9587197 ~ 9593083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582136.2
CCAAATATGAGATGGATGTTTCTAAACGAAAGTGTTTTTGTGACGGACCAATGAAAGTTGGAACGTGCTACCTTTAAAGTTTTCCGCCTATTTCTCGGCAATATTCAATTCCTCCTCTTGTCTGGTTGTGATTGTGAACTGAAAACATGCAGCAGTGCACATTAGTCAGTGCATCCGGCGCTCGTGTCCCACTAGCCGATGGCCGAGCCGTGATCCTAGGTCGTGGTCCAGAGACTGGAGTTATTGACAAGAAGTGCTCCAGACACCAGGTGAAGCTGGTGGCCTGTTATGCAGACAAGGAGGTACTTGTAACACAGCTTGGCCCCAACCCCTCATCCTTGGGAAGTGAGAGTCTTGGTAGAGGCCAGTCTGGCCGACTGACCCATGACAGCACCCTCTACCTGGTTAACCAGAGCCACCCCTTCAGAGTGCAGTTCTCTGCTTCCAACGAAACCTCCTCATCCTCTGCCCAGAAGGGGAAGGTTGTAGAAAGGTTGAAAGCATTGGATAAGACAAAAGGAGGAAAGAacgacagagggagggaggttcaAAGCACAGTTCCCAAACGCAGCATCCAAGACTTTTTTGCTTCCTCTCCCAAGAAGGCATCCAAGAGGCCACACAGTTCTGAGGAGCCCCTGCAGGAGAAGCGTAGGAGGACTACAGGCTCCGACAGTGGGGGCGAGGACGAGGCTGAGAAGCTTGTTGAGGAGAAGCTCCGACAGCTCCAGGAGATGTCAGAGAGTGCTTCAGGGGCTAGCAGAGACTGTGTCCAACAGCAGGCATCAGTCTCAGCCTGTTCTCGAAGCCACTGGCAGCAGATTGGAAACCTCATGATCTACACTGCTGTTGGCGTCACTGGAAGCACCAAGATTGCTGGATTCGACATTGACGGGTGTATCATCACCACCAATTCTGGCAAAGTGTTTCCCACCAGCCCAGATGACTGGAGGATTCTCTTTCCCGAGATCCAACCCAAACTGGCCAGCTTATTAAAGAAAGGCTACAAGGTTGTGTTTTTCACCAATCAGATGGGTATATCTAGGGGGAAACTGAAGCCTGAGGATTTCAAGTCTAAAGTGGAGACCATTCTGAAGACATTACAGCTCCCCGTACAGgTCTTTGTGGCGTCTGGTCCTGGGATCTACAGGAAGCCAGTGATGGGGATGTGGGAGCACCTGTGTGAGAAGGGTAATGGCGGCGTGGCTGTAGACAAAAGCCAGAGTCTCTATGTGGGAGATGCAGCGGGACGGCCTGTTAACTGGGCTCCTGGCAAGAAGAAGAAGGACTTCTCCTGCAGTGACCGACTGTTTGCTCTGAACCTTGGACTGCAGTTCCACACTCCAGAGGAGTTCTTCCTGGGCTGGAAGACCGCCCCCTTCAGTCTTCCTCCATTTGACCCTaggaaaTGTGACTCTAACGCCCGTCTATATGACCCGCCCAGTGCCTGCCTCACCTCCACCAAGCAGGAAGTAATCATTGCCGTGGGTTTCCCTGCTTCCGGGAAATCAACCTTTTTCCACACACACATCGTCCCCAAAGGTTACGTGTACGTGAACCGGGATACCCTGGGCTCTTGGCAGAGCTGTGTTTCGGCCTGTGAGCGGGCACTGAAGGAGGGGCGCAGCGTGGCGGTGGATAACACCAACCCAGACCTTGAGTCTCGCAAACGGTATGTTGACGTCAGCCAGAGTTTGGGCGTGTCCTGTCGGTGCTTCAACTTCTCTGCCTCCCTGGAGCAGGCCAAGCACAACAACAGATTCCGTGAGATGGCCCCCTCCACCACCAAGCACCTCAAAGTCAATGACATGATCTTCCACAGTTACAAGAAGAAGTTTGTGGCGCCCAGTCTCTCGGAAGGCTTTTCAGAAATCCTGCAAATTCATTTTGTCCCAACCTTTACAGACAGCCAATCAGAGGCCCTCTTCAGGCAGTTCTCTGAAGGCTGATTGGGTGGCTGGTATTCCAACCTAAAATTCATCAGATTGTTATTGGAAAATAATCTGGCAGTCGTACCAGTCCAACATTTTTCTATGCTGTGGCTGTATGTAGATAAACTATTTAGTTACCTGCTGCTAATCAACAAATCATTGCTATTACGCTACATACATTTTGAAGGTGCAGATGTTTTAACTAAATGTAACCACAGCAGACAGCACACATCAGTATTTTTGTTTGATTGGCTTGAGTTTCATATTTTCGTATCGTGTTTTctggtcagatataacagtacTTGTTTCCAGAAAGcctaaaaagtaaaaaaaaaaaaaaaaaaaacatgaacaatGTTTTATTAATTGTATATTTTAATAAATTGTTATTAATTGAA

Function

NR:

description
bifunctional polynucleotide phosphatase/kinase

GO: NA

KEGG:

id description
K08073 PNKP; bifunctional polynucleotide phosphatase/kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582136.2 True 2329 mRNA 0.49 18 9587197 9593083

Neighbor

gene id symbol gene type direction distance location
LOC110503680 LOC106612628 coding downstream 7258 9570867 ~ 9579939 (-)
cbln20 LOC106612736 coding downstream 41125 9544805 ~ 9546072 (-)
cbln18 LOC106612737 coding downstream 50731 9533602 ~ 9536466 (-)
LOC110503678 LOC106612633 coding downstream 61641 9519930 ~ 9525556 (-)
LOC110503673 cep164 coding downstream 129340 9439390 ~ 9457857 (-)
LOC110503684 LOC106592295 coding upstream 13242 9606325 ~ 9608246 (-)
LOC110503686 LOC106592295 coding upstream 59487 9652570 ~ 9654648 (-)
dpf1 dpf1 coding upstream 64888 9657971 ~ 9730313 (-)
LOC110503314 LOC106612624 coding upstream 178341 9771424 ~ 9846389 (-)
LOC110503688 LOC106612623 coding upstream 255139 9848222 ~ 9862581 (-)
G1900875 NA non-coding downstream 20446 9566346 ~ 9566751 (-)
G1900872 NA non-coding downstream 27792 9559166 ~ 9559405 (-)
G1900855 NA non-coding downstream 58301 9528680 ~ 9528896 (-)
G1900844 NA non-coding downstream 68066 9516559 ~ 9519131 (-)
G1900807 NA non-coding downstream 78908 9507692 ~ 9508289 (-)
G1900884 NA non-coding upstream 2499 9595582 ~ 9595911 (-)
G1900901 NA non-coding upstream 20975 9614058 ~ 9614979 (-)
G1900903 NA non-coding upstream 24465 9617548 ~ 9629252 (-)
G1900922 NA non-coding upstream 89345 9682428 ~ 9697449 (-)
G1900945 NA non-coding upstream 138611 9731694 ~ 9731937 (-)
G1899875 NA other downstream 1539223 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3127132 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3355389 6181377 ~ 6231808 (-)
G1896030 NA other downstream 3717979 5868896 ~ 5869218 (-)
G1901072 LOC107388308 other upstream 412289 10005372 ~ 10012354 (-)
G1901206 NA other upstream 612137 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 805959 10399042 ~ 10399857 (-)
G1901405 NA other upstream 1023841 10616924 ~ 10617481 (-)
G1901516 NA other upstream 1260748 10853831 ~ 10856437 (-)

Expression


Co-expression Network