dpf1 (dpf1)


Basic Information

Item Value
gene id dpf1
gene name dpf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9657971 ~ 9730313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961761.1
ATGAAATTGAAATTGCTGGTATATTACATGTGCAATACGGGGATCTGCAGTGTTACATTGTATCTATCATACTATATCAAAATGGCCACAGTGGTACAGAACCCCCTGAAATCGCAATCTGGAGGAACAGTCATTAAGaacagTCTGGGCGAGGAGTTCTACAGAGAGGCCATCGAGCACTGCCGCAGCTACAATGCCCGCCTGTGTGCTGAGCGCTCCATGCGCCTGCCCTTCCTGGACTCCCAGACCGGCGTGGCACAGAGCAACTGCTACATCTGGATGGAGAAGAACCACCGCGGCccagGTTTGGCCCCAGGACAGCTGTATACTTACCCTGCGCGCTGCTGGCGCAAGAAGAGGCGGCTAAACATTCTGGAGGACCCGCGCCTCGGACCCATTGAGTTTAAGATCGactacGAGGCGTCTCTGAAGAAGGAAGGGGGCTTGCCGGAGGGGCCGGTGTTGGAATCACTGCTCAGTGGAGAGACTCTGGACAAGAAGGTGGAGACCAAGGAAGAGGAACCTATGAGCGAGTGCCAGAAGTTGCTGGTCGGTGATTTCCCCCATGAACTGGAAGcggaggagatggaagaggacGTCCCCAAACGCAAGAACCGCAAGAACCGCGAAGGACGGGCCTGTGGTGTAGGGGGTATGAGGAAGAGACAAGAACCCAGCACCATTGAGGACAGGGACAAGCCGTACGTCTGTGACAtctgTGGGAAGCGCTATAAAAACCGCCCGGGCCTGAGCTAccactacactcacacacacctagcggacgaggagggagaggaggactctGAGCGACACACCCTGCCCTTCCAGCGCAAGAACAACCACAAGCCTAAGAAAGCTGCAGATGGGTCGGTCATCCCTAACGGCTACTGTGACTTCTGCCTGGGCGGCTCCAAGAAGACCGGCTGTCCCGAGGACCTCATCTCCTGTGCCGACTGTGGACGCTCAGGCCACCCGTCCTGCCTGCAGTTCACAGTCAACATGACGGCAGCAGTACGGACCTACCGCTGGCAGTGTATCGAGTGCAAGTCCTGCAGCTTGTGTGGCACCTCCGAGAATGACGATCAGTTACTATTCTGTGATGACTGTGACAGAGGCTACCATATGTATTGCCTGAGCCCCCCTATGGCGGAGCCCCCAGAGGGGAGCTGGAGTTGCCATCTGTGTCTGCGGCAGCTTAAAGAGAAGGCCTCGGCCTACATCACCCTGACCTAATCTACCacgctacaccccccccccccccccaaacatggCAAACGGACCTACTACAATATGAGAAGACTCCCCCAAGCCCCTGCAGTTTTTCCTCCTCTTTGAAACAACAACAGATGTCCGTCCATCTCTCCTGTCGTCAGGTCTCCCAGCCCCAGCTGTTTTAACGTCAATGGAAGCATGTACTTCCCAGGGTGCACCATGCTCCATCCaggtctgtccctgtctgtccctgctgAGTCCCAGCCACCTGCCGCTGGAGTCCCCTCCACCTCGGGCCCAGGATGAACCACCTTTTACCCCAGCAGCATCAGGGAGAGCATCTGATCATCAATAGTCTAACTGGCCCTTCACCTTCTGTCTCCGAAGAGCCGTTTATCAACAGCCCACAAGGGCACTTTCTCTCCTGTGAAGGGTCCTTAGAGGAGCCTTAATGAGCATCAGCTGCCACTGTGGCCCTATACTACCATAGCTCGGCTGTGGCCCTGGCAGTGGAGTACacacggagagggagaggcaggccGTAGTGACGCCTAGACTCCTCGTTAGGTTTAAACAGCTGCAGCCCCGCCCCCTTCCTCCCACATGGTGCCTCCACTCACTCTACTTCAGCCTTTGACAGTGAAGTACTCTGGGATTGATACCATCGCCCGGAGCTATTGTGGCTTGATGACATTTGCagaggagagggagtggagaggttgTCACTCTGCCATCAGCCACTTAGATCAAATTGTGTGTCCAAAAAAAGAATGAATTAGAGCAAATGTTTTCCCCAACTATGAACTTCTTGTTACCTTCatttccttaaaaaaaaaactgaaaaagcCAACATGAGACTGCTATGACTTTGGTGGAGCTTGGTGTATTTTGGCTGTGTGTGTAGCAAGAATGTAGGTATGTTTTAAGTGTGGACAATGCAGATTTTAATGTCTGGCCTTGTCAAAAATACAGGGCCcaaatttcttttttttttaaactttatttgcATGGTGTTAACATTATAGTTTTTAAAGATATTTTAAGGATAAAATGTATTTAAGAAAGCACACTTAATTCGCAATAATGTGTTTGTTGACCCATTTGGGTaaagttgagtgtgtgtgtgtgtccatctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggtaaaTGTGCCCTCCTAAAACTGTGTGGAAGTGAGAGCCAACCGTAGCCAACCAGGTGCTAGGCAGGACCTATGGCAGGGTCGGGGAGCAGGAAGGGGAGGGGCTTCTGATTCCTAGAAACACCACCATGACTTACTGTATTATGTTTTCTGTTGGACCAAACGAATTCAAGCCAGCTTGCGCCGTTTCTCTCTTCCGAGCCCTTGTTTTTTCTCGAAGGATAACTCATTTTTGTGAAAAGTCATCAAAACTAGTAGAATGAGCGCTTTACTATCTGCAAGACTGCTTTGCGTGCTAGGACCTTGTAATATAATGTGCTTTCAAAGAGTAAGCTAAAAGCAGAGGACTTCTACTAACTGGGACGCCAGCATGTGTTTGTGAGCTTGTACTGAGACAAGTCTTTTTTTCAACCCAAAGTCCCCTCCCCCAGTGGCCTATCTGACTGGACTATTGCATCACGCTGCAACTTTGATTGGTCCAATGATTCCTCTTCCTAGAGCTTTAAGTTGGGAGGCATTTTGCTGTAAATAGATTGtcactctctccatctatcaAAAAGACTAATTGCAATTTCATAATTCACCGTCTCTCAGTGCACATCGAAATATGAACTCAAAAATACTATTTCTGTCTATTTTAATGCACTTAAAAGTGgttatcatatttgcctccataTTTGTAATGTCTCTACTCCTCAAATGTATGTGTTTATATTCTACTATGGTATGATCCAGCACACACAGCCATGTTGGGGAAAAGGTCACTACTTGCGCTACCCAAAATGTATGTACCATCATTTTAGCCATGTGATACCAGAAATGATCTTGATTTCATATTTTGatatttactttatttatttttccttcgAATAACTAGGGATGTTTTTACCTCTTCTCTCTCAGAATTGTTCTCTTATTTGTTTTTGTTGGTGTTTTTGTACTTCAAACATTTTGCACAGTGTGTTTGTTTggcatgtgtgtgtacgtgtgtgtgtctatgtgtgtgacagagagagagagagggggtgggggagtggTGGGGAGACACAGGCAGACTTAAAGGCGTTGTCTGTCAGTGGTTCTGTTCCAAATTACACCCTTTCCtctttgtagtgcactattttgaaCAGTGGCCAAAGGGCTCTGGTAGAAAAatagtgcaccacatagggaatagggtcccatttggggtGCACACATTCTCTTTAATCTAATAATGAggtcatagaaaaacaaacagtcaGTCGATGGTTATTATTTTTCAAACTTCCTCTCCATGACACAAGCTGCATGCCGATACATCCAAGACTACAGTTAACACTAGTGTACtgtgttagaatgggtactgctGAGGCCTCAGTCCTTGCTACTGTAGTTGGCCCTGAGTGAcagtagcctgatcccagatctgtttgtgctgtcacaTGACAATGACCCTTAGAGTTGGTAAGACAGCACACAGATCTAGGATCggccagagagacagaatgtcATTCTACCGACTGTAGTGTCAGTAGAATGTGTCATGATAGATTGTCTTTTGAGGAGTCTGTCCATtaaaaggacaatgtgaaaaccTTCACAACATTACGGTTTCATCCTTTTATTTAAGTTTCCCACCAATATCCAATCAGAGTTGTGTTCAGAGCCGGTACTGAGGTAATAGCCAGGGGATGACGTGATTCTGAGTGGGTGAGGTGAACTGATCTCACTGATAATAAGCCTTTACTTCTGAATTTATTCCTGGCACTTAAGAGGATGTGGTGGAGTCAAACTACTTTGATTGTACTCTCTGAGAGGATGCAGTTGCAGAAAGAGGGGTGACTCTAGCTCAGATATGACCTTTGAcacccccccaggagactgagcTGAAAGATAGGGGGTCACCCAGTGATCTATCCTGTTCCGTCTCAGCATCCTTCACTCCCTCCCCATCTTTAGACTGGGGGTGGGATTAGAATGGAAAGATTGTTGGCCAGTCCTCAAAAGAAGCAGGATTTTGGCCCTCTTGTAAATTATCGTGCTGTGATCTTGCTTGCACTTTTTATTACCAAAATAAGAAAttcctgtgtgagtgtgtgcacatTTTCCTTTCTTGTAACTGTCTGTTGGAAAAAAAGAAACATTGGATAAAATGAATTTGTTCGTATTTACCCTGATGGAGATCAAATCTTCCTGGACACGTGGGTTGTTTTTTCCTTCTCTACCTGGGAACACTTTGACATATTGACTACAACTGCATAGCTGTCATTCATTCACTGTAAATTCATCTGTCTTTCTCCAGGCACACAATTTTCCCACATTTTTCTCTCCTGACTTCTTTTTTCATTTACAAACAATCATAAATAAAAGTTGTAACTCCTGAAAA

Function

symbol description
dpf1 Predicted to enable histone binding activity and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated; nervous system development; and positive regulation of transcription by RNA polymerase II. Predicted to be part of nBAF complex. Is expressed in brain; olfactory placode; and telencephalon. Orthologous to human DPF1 (double PHD fingers 1).

NR:

description
zinc finger protein neuro-d4

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22198 BAF45B_C, DPF1_3; BRG1-associated factor 45B/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961761.1 True 4756 mRNA 0.47 12 9657971 9730313

Neighbor

gene id symbol gene type direction distance location
LOC110503686 LOC106592295 coding downstream 3323 9652570 ~ 9654648 (-)
LOC110503684 LOC106592295 coding downstream 49725 9606325 ~ 9608246 (-)
LOC110503681 LOC106612627 coding downstream 64888 9587197 ~ 9593083 (-)
LOC110503680 LOC106612628 coding downstream 78032 9570867 ~ 9579939 (-)
cbln20 LOC106612736 coding downstream 111899 9544805 ~ 9546072 (-)
LOC110503314 LOC106612624 coding upstream 41111 9771424 ~ 9846389 (-)
LOC110503688 LOC106612623 coding upstream 117909 9848222 ~ 9862581 (-)
LOC110503315 NA coding upstream 149784 9880097 ~ 9887061 (-)
LOC110503691 LOC106612619 coding upstream 161908 9892221 ~ 9897938 (-)
LOC110503694 NA coding upstream 193998 9924311 ~ 9941768 (-)
G1900903 NA non-coding downstream 28719 9617548 ~ 9629252 (-)
G1900901 NA non-coding downstream 42992 9614058 ~ 9614979 (-)
G1900884 NA non-coding downstream 62060 9595582 ~ 9595911 (-)
G1900875 NA non-coding downstream 91220 9566346 ~ 9566751 (-)
G1900872 NA non-coding downstream 98566 9559166 ~ 9559405 (-)
G1900945 NA non-coding upstream 1381 9731694 ~ 9731937 (-)
G1900949 NA non-coding upstream 4647 9734960 ~ 9735248 (-)
G1900970 NA non-coding upstream 27647 9757960 ~ 9823033 (-)
G1901047 NA non-coding upstream 158570 9888883 ~ 9943437 (-)
G1900968 NA non-coding upstream 191558 9921871 ~ 9922678 (-)
G1899875 NA other downstream 1609997 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3197906 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3426163 6181377 ~ 6231808 (-)
G1896030 NA other downstream 3788753 5868896 ~ 5869218 (-)
G1901072 LOC107388308 other upstream 275059 10005372 ~ 10012354 (-)
G1901206 NA other upstream 474907 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 668729 10399042 ~ 10399857 (-)
G1901405 NA other upstream 886611 10616924 ~ 10617481 (-)
G1901516 NA other upstream 1123518 10853831 ~ 10856437 (-)

Expression


Co-expression Network