LOC110503696 (LOC106612616)


Basic Information

Item Value
gene id LOC110503696
gene name LOC106612616
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9979013 ~ 9984042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582157.2
ATTAGCCAACTACTTTCTTGGTTCGCTCAGTTCCGCGTTCTCACCCCAGCTTATCGCCACTCACGGGAAGCACGACTCGATCCTCTTTGCTTCAACAGACAGGCTCTAGCTCAGTCCAGGGACGCTAGATCTGACACCGGAAGAATAAGGACCCATACCTTCCGTTCTTGACGCCGATGCGCACTTCGAAAGCGCACGTCTTGGATTGAAAGGTTCATCACAATTAGAACGGTGATCATACCACTGGCTAGTGTGTTTAATTGTTGGTTTCAGCCTACTTTGTAAGTGAAATTGAAAGAATACACCGGCACCACAATACCTATTGAATAGATGTGCTTTGAAAGAGCTTGATCAACAGGTGTGAAGGCAGCAGAACAAGAAGGCGCCCTGCACCTGCACTCTTTACCAGCGAGTAGAGTGGTACTATTGTAGCCTCAAAAGTTGGCAAAATACTGCAAGAGGGTCAGAGACAAAGGAGGAAAACAAAAAGCCGATTGGCATTTATAAAGAAAAACaagtgatagagagaaagagagagggagggacagagagagagaggaagagagaaagcggGACAACCCTTGGAGAATAGCAGAAGACCCGGCCCCCGGCCtgagtgtaagagagagagagggcgagggagcgTTTTAAAGCCGGCACAGGCATGATGTCCTACATTAAGCAGCCTCATTACGCCGTGAACGGGTTAACTCTGTCTGGTCCTGGCATGGATCTACTACACTCTGCCGTCGGATACCCAAacATCCCCAGAAAGCAGCGTCGGGAAAGGACCACGTTTACGCGCGCGCAGTTAGACATCTTGGAGGCACTGTTTTCCAAAACGCGCTACCCCGACATCTTCATGAGGGAAGAAGTGGCCCTCAAGATCAACCTACCAGAGTCTCGTGTACAGGTATGGTTCAAGAACCGCCGTGCTAAATGCCGCCAGCAGGCACAGCAGAGCACAGGCCAGTCTAAACCTCGTCCACCCAAGAAGAAGGCCTCTCCAGCCCGGGAGGCCAACTCTGAGGCCAGTGTCAACACCAACGGGTCCTACAGTCCAGTACCCCCTCCCCTTGGCCCCGCCATCACCCCCAGCTCCAGCAGTGCCAACGCGACCGTGTCCATTTGGAGCCCTGCCTCCATCTCCCCGCTGCCAGACCCCCTGTCAGCTTCCACCACGCCCTGCATGCAGCGCTCCTCTGCCTACCCCATGACCTACACCCAGGCCCCGGCCTACACCCAGAGCTACGCAGGCTCGTCCTCCTACTTCACTGGCCTGGACTGCAGCTCCTACCTGTCTCCCATGCACTCACAGCTCTCCGCCACCGGGGGCGCCCTCAGCCCCATCACCTCCATGGGCGGGCACCTCGGCCAGTCCCCTGCCTCTCTGTCTTCGCAGGGCTACACAGCCGCCTCGCTGGGCTTCGGGGCCGTCGACTGCCTGGACTACAAGGACCAAGCTGCCTCCTGGAAACTCAACTTCAACGCAGCTGACTGCCTGGACTACAAAGACCAGAACTCCTGGAAGTTCCAGGTCTTGTAGGTGGGATGAGGTAAGGAAGGGACCAGCCAGGAGAAGCTCCCATTCCATTCAGTGTTAAAGACTTGGACACATAGATGGTCAACTAATCATTTCAGTCCACGAACTCAATGACTGAGAAAATGTcattatttttttgtgttatgGAAAGCAATGTGGATAGCAGATCCACTGATGTTGGGCTTTGTGATTTTTGGGAAGGTGACAAGAATCAATATTGTTAAATCAATGATATTCAATCAATACAGTATTATCAACGTGAGGATGCACAATCAATGGGACATTGAGGTAATAAAGCTAGTCATATAGAAGTGATGACAAACAAATCGACATGTAAGAAGATAATTGAGATACTAAAATTGAGAACTGATTTTAAAAAGGAATACATACCACACGATTGAAAGCAATACCTGTAGAATGAAATtaatttgatgattacatttcgaAAAACAGCATAATTAACAAAGGTCCATTCTTGTATGCCATAATCAGGGTTTTGAGGACCAAATGAATAGAGATTTGCAATTTGAAGGCTGGATGAAGTATTATTTTGATGGAGAGAACAAACaattgataaaataaaaaaaaggataTTAAATATTGGTTGCAATGAATCCCATTAGTCAGGTAGCTGATAGTTAATTTCTGAACAAGATCTGTCACTCCTTTAGTGGTCTTGTTGTGCTTAATAGTAACCTAGAATTAGAAAGGAAAAGTGGAATTCCACCCCCAAGATGGGTGGGCTGGCCTTGACTTTAGACCAAATTGGATTCAGTGGTTATTTTTGACATTACTTCAGGACAATTGAAAGTTGTGTACATTGTAAGGAAGAAAATGACTCTGCCTTGAATTTGATATTGAACAAACAGAGGGAGTTCCAGCCAGAGGTGGAGACTGACTCCAATGGGGACAACGTTGCTTTCTTTTTCCCTCTGTCATTTGTTTTATGGTTTATTTTTGTTATGAAGCTGCTTTACATATTTGGTGAATTGAGAGATCCTGGagccaaacagacagacacacggacgTGCATGGGTTTCTCAATAAGCAAGAGGGGATGGGTAAAGCAAGGATAACCTTTGGTACTGTCAAGAAGAGATCATAGGCTATTGTTGTATCCTTTTACCCAGTAGCTTTGAAGGGAGGGGATCCTCGGCGGACAGTGTGTTAGAGTGAAGTGGGGTAAAGGGGTAAAGGAGGGGGGCTGGGTTAGGGTGATAGGGTTAGTAACAAACCTCTTGTCTTTGAGCACCAATCGTGGAATGAATCACATCTGGGCACAAGGCATTCTGGGATATGCAAGGATGACAAACGTGCAGCCTTTGCGTTTCTATCCAACTGTGTTTGTTGGgcggatgggggggggggggggggggggggggggctttgacgATTACTTCACCAGTACTTAAATACTAAATTTCCCCTTAATGACTAAACTAACCCTGTTGCCGAATATACTGTTACAATGAGATATTTGCAGGAGAGAAGACTCAACAGTAGAAAGGGAAGGGTCTGGCCATGACTGCGCTACCCTTGCACTGAAAGCACGGACCATCTCTCAGTTGTTACCTGTAAAGAAGCGAGGGGTACCATTTTGTGTTGATGTATCGTTTCCTCTTTTTGTATTAGAGTATAACATATTATGTTTCTTAAATTTGTGAGTCCTTTGAAGTAAAATTGTGGTAATTTGTTTGAAGTtaatattatcattattactataattattattattattaattctaAAGCTATTATGAATATTGCTATTATTCTGTTTATGTCGTTCTTTTTGTAAATATTAAACTTCACTTGAAAATGCAATCACGTCTGGTACCAACAATGTGTTACAGACACACCACGCAAATTTCTAGAAGACTGGCaattttaattgtaatttttttctGTTTTCTGGTCTCTTCTTTTCTGAACAACGTTTTTCAAACTCAGGGGTTTATCCAATAAAGTTAGTGGTGAGAGCATACAACGCTTTGTATACTTCCTGATCATCCACATTCATTATTCGCATTCTAATCTATGCTTTTTTTTCTGACACGAATGACTCCCCCTCTTTAGTATTAGTATATCGGACATATCTCCTGTGTGTTTGCCCACCCCCCACTTCTACATGGGATAGCTATTGAGTTTTAAGACATTAAACAACTG

Function

NR:

description
homeobox protein otx5-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09326 OTX1; homeobox protein OTX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582157.2 True 3706 mRNA 0.45 3 9979013 9984042

Neighbor

gene id symbol gene type direction distance location
LOC110503694 NA coding downstream 37245 9924311 ~ 9941768 (-)
LOC110503691 LOC106612619 coding downstream 81075 9892221 ~ 9897938 (-)
LOC110503315 NA coding downstream 91952 9880097 ~ 9887061 (-)
LOC110503688 LOC106612623 coding downstream 116432 9848222 ~ 9862581 (-)
LOC110503314 LOC106612624 coding downstream 132624 9771424 ~ 9846389 (-)
LOC110503700 LOC107388308 coding upstream 21298 10005340 ~ 10008987 (-)
LOC110503698 LOC107388308 coding upstream 25319 10009361 ~ 10012404 (-)
LOC110503704 LOC106612609 coding upstream 120524 10104566 ~ 10114248 (-)
LOC110503316 prss16 coding upstream 145850 10129892 ~ 10139994 (-)
LOC110503705 hnrnpl coding upstream 158986 10143028 ~ 10153094 (-)
G1901082 NA non-coding downstream 5587 9972794 ~ 9973426 (-)
G1901047 NA non-coding downstream 35576 9888883 ~ 9943437 (-)
G1901071 NA non-coding downstream 41561 9932534 ~ 9937452 (-)
G1900968 NA non-coding downstream 56335 9921871 ~ 9922678 (-)
G1900970 NA non-coding downstream 155980 9757960 ~ 9823033 (-)
G1901087 NA non-coding upstream 266 9984308 ~ 9985894 (-)
G1901088 NA non-coding upstream 2100 9986142 ~ 9986610 (-)
G1901100 NA non-coding upstream 42811 10026853 ~ 10027069 (-)
G1901126 NA non-coding upstream 88196 10072238 ~ 10072472 (-)
G1901128 NA non-coding upstream 94849 10078891 ~ 10079273 (-)
LOC110503680 LOC106612628 other downstream 404864 9570867 ~ 9579939 (-)
G1899875 NA other downstream 1931039 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3518948 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3747205 6181377 ~ 6231808 (-)
G1896030 NA other downstream 4109795 5868896 ~ 5869218 (-)
G1901072 LOC107388308 other upstream 21330 10005372 ~ 10012354 (-)
G1901206 NA other upstream 221178 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 415000 10399042 ~ 10399857 (-)
G1901405 NA other upstream 632882 10616924 ~ 10617481 (-)
G1901516 NA other upstream 869789 10853831 ~ 10856437 (-)

Expression


Co-expression Network