LOC110503700 (LOC107388308)


Basic Information

Item Value
gene id LOC110503700
gene name LOC107388308
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10005340 ~ 10008987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961998.1
TGAGTGGAACACCCAATTACTGTACAGAAATAATCTTGGGGATTTTCACATTTTGTGAAAGTTTTGAATCAGCTAAGGTGATTTGTAGGAGCCATGGCCCGTACCAAGCAGACAGCCCGTAAATCTACTGGAGGCAAAGCCCCACGTAAGCAGCTGGCCACCAAAGCTGCCCGCAAGAGTGCCCCTTCTACTGGTGGGGTCAAGAAGCCCCATCGTTACAGACCTGGTACTGTGGCCCTGCGTGAGATCCGTCGTTACCagaagtccactgagctgctgatcCGCAAGCTGCCATTCCAGCGCCTGGTGAGAGAAATTGCTCAGGACTTCAAGACTGACCTGCGTTTCCAGAGTGCAGCCATTGGGGCCCTGCAGGAGGCCAGCGAGGCTTACCTGGTTGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGTCGTATCCGTGGGGAGCGTGCTTAGACGCCTACCTGAtttacctctcctcccctcaacagtctgccctccccttccctccccctctcctcttatgTTGGTAGTGATTTAGAGAAACAATGATTATGATAAGAATAATGTGTATAGTGGTGTTTTCTTAGTACTCTCGGCAGCAGACTATTATAGGGTACTCTTTTGTGCATGTACCTGCTTGTTGCTGGTCAGATCccccaccatcacaccatcaAATCAGATGTTCCATTGTCATGATGCCGTGTGGAGAGATCAGATAAAACAAGACAGGGAATCTGACATAGGTTGTGGTCGCAGGAGGATGGGGTTAGGTTTTTGTCTGCAGAGTGGAGTACCTCTTTCTCTGCAGGGTGCTAGAACAACTGCCCTAGTCCCCTTCCTCCTTCCCCACTCTTCCAGTGAAATAGAGACTGAGCTGGTATCTTTCATGGCAACACATGAACGAGagtccagcccccccccccccccccccccccccccccttgtgtgTGAGCGTGTAGATTCTGATCAGCACAGCAAATTGTATACAATTCAAAAACATCTCTGGAGCAATTGTTTATTACAATATTGATCATTATCATGGGTATTATTTTTTATGCTTACGCACATATTTCATAGTGGATAAAAGATTTGTGAATGAAATGGAGGTggattcaaataaaatgttgtACAGAAAACAAAATTGACGTAAGCTATCGTTTCTACTGGTGTTGAAGCTTGTGATTTGTTTTAGCTGTCAAAGGGGATTCTAGATTGTTCATTCTCATTTCATCGCCTCTTATATTGGCACTATTTTCCCTTTGTCTTTGAATTCTCAAATTTGGCTTCTGCGATAAATAATTGGAGACAGCATTTTAAGGCTTTTGCAAACAAATAGTGAATCCAGTGTTCTTTGTGATCACTCCTGTGGGGCCTTGTTGTGAGGTTTATGGAGCTGGTGGTCAATGCTCTCTTGCAAACCAAAAACAGTCTAATTGGTAAAGTGATCATGTATGTTAATGTTATGTGAGCTGTAATTGGAATGGTCACGGATATTTAGACCTCCCCCTTTGCTTCTCAGGTTGTGTCACCCTTTTAACTTAAAATCATTTTTGTTTCTTAATTGGAATTTGAAATGTTAAGATgtttaaataaaacaatgtttGTAATTTCTCATATGTGGTAATAAATGGATGTTACACGTC
>XM_021582161.2
ATAGCGGCCATTTTCCCGCTGGACGGTTGTTCCCATTGTGGATACGAGGAAGAAAATACTGACACcgccagacaagctaaacacttcTCACATTCTTTTTAACCACTTTTGGTGTGATTTGTAGGAGCCATGGCCCGTACCAAGCAGACAGCCCGTAAATCTACTGGAGGCAAAGCCCCACGTAAGCAGCTGGCCACCAAAGCTGCCCGCAAGAGTGCCCCTTCTACTGGTGGGGTCAAGAAGCCCCATCGTTACAGACCTGGTACTGTGGCCCTGCGTGAGATCCGTCGTTACCagaagtccactgagctgctgatcCGCAAGCTGCCATTCCAGCGCCTGGTGAGAGAAATTGCTCAGGACTTCAAGACTGACCTGCGTTTCCAGAGTGCAGCCATTGGGGCCCTGCAGGAGGCCAGCGAGGCTTACCTGGTTGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGTCGTATCCGTGGGGAGCGTGCTTAGACGCCTACCTGAtttacctctcctcccctcaacagtctgccctccccttccctccccctctcctcttatgTTGGTAGTGATTTAGAGAAACAATGATTATGATAAGAATAATGTGTATAGTGGTGTTTTCTTAGTACTCTCGGCAGCAGACTATTATAGGGTACTCTTTTGTGCATGTACCTGCTTGTTGCTGGTCAGATCccccaccatcacaccatcaAATCAGATGTTCCATTGTCATGATGCCGTGTGGAGAGATCAGATAAAACAAGACAGGGAATCTGACATAGGTTGTGGTCGCAGGAGGATGGGGTTAGGTTTTTGTCTGCAGAGTGGAGTACCTCTTTCTCTGCAGGGTGCTAGAACAACTGCCCTAGTCCCCTTCCTCCTTCCCCACTCTTCCAGTGAAATAGAGACTGAGCTGGTATCTTTCATGGCAACACATGAACGAGagtccagcccccccccccccccccccccccccccccttgtgtgTGAGCGTGTAGATTCTGATCAGCACAGCAAATTGTATACAATTCAAAAACATCTCTGGAGCAATTGTTTATTACAATATTGATCATTATCATGGGTATTATTTTTTATGCTTACGCACATATTTCATAGTGGATAAAAGATTTGTGAATGAAATGGAGGTggattcaaataaaatgttgtACAGAAAACAAAATTGACGTAAGCTATCGTTTCTACTGGTGTTGAAGCTTGTGATTTGTTTTAGCTGTCAAAGGGGATTCTAGATTGTTCATTCTCATTTCATCGCCTCTTATATTGGCACTATTTTCCCTTTGTCTTTGAATTCTCAAATTTGGCTTCTGCGATAAATAATTGGAGACAGCATTTTAAGGCTTTTGCAAACAAATAGTGAATCCAGTGTTCTTTGTGATCACTCCTGTGGGGCCTTGTTGTGAGGTTTATGGAGCTGGTGGTCAATGCTCTCTTGCAAACCAAAAACAGTCTAATTGGTAAAGTGATCATGTATGTTAATGTTATGTGAGCTGTAATTGGAATGGTCACGGATATTTAGACCTCCCCCTTTGCTTCTCAGGTTGTGTCACCCTTTTAACTTAAAATCATTTTTGTTTCTTAATTGGAATTTGAAATGTTAAGATgtttaaataaaacaatgtttGTAATTTCTCATATGTGGTAATAAATGGATGTTACACGTC
>XM_021582160.2
CACTATGGCATTCTGGGAGAAATGATTGACATAGCGGCCATTTTCCCGCTGGACGGTTGTTCCCATTGTGGATACGAGGAAGAAAATACTGACACcgccagacaagctaaacacttcTCACATTCTTTTTAACCACTTTTGGTGTAGGTGATTTGTAGGAGCCATGGCCCGTACCAAGCAGACAGCCCGTAAATCTACTGGAGGCAAAGCCCCACGTAAGCAGCTGGCCACCAAAGCTGCCCGCAAGAGTGCCCCTTCTACTGGTGGGGTCAAGAAGCCCCATCGTTACAGACCTGGTACTGTGGCCCTGCGTGAGATCCGTCGTTACCagaagtccactgagctgctgatcCGCAAGCTGCCATTCCAGCGCCTGGTGAGAGAAATTGCTCAGGACTTCAAGACTGACCTGCGTTTCCAGAGTGCAGCCATTGGGGCCCTGCAGGAGGCCAGCGAGGCTTACCTGGTTGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGTCGTATCCGTGGGGAGCGTGCTTAGACGCCTACCTGAtttacctctcctcccctcaacagtctgccctccccttccctccccctctcctcttatgTTGGTAGTGATTTAGAGAAACAATGATTATGATAAGAATAATGTGTATAGTGGTGTTTTCTTAGTACTCTCGGCAGCAGACTATTATAGGGTACTCTTTTGTGCATGTACCTGCTTGTTGCTGGTCAGATCccccaccatcacaccatcaAATCAGATGTTCCATTGTCATGATGCCGTGTGGAGAGATCAGATAAAACAAGACAGGGAATCTGACATAGGTTGTGGTCGCAGGAGGATGGGGTTAGGTTTTTGTCTGCAGAGTGGAGTACCTCTTTCTCTGCAGGGTGCTAGAACAACTGCCCTAGTCCCCTTCCTCCTTCCCCACTCTTCCAGTGAAATAGAGACTGAGCTGGTATCTTTCATGGCAACACATGAACGAGagtccagcccccccccccccccccccccccccccccttgtgtgTGAGCGTGTAGATTCTGATCAGCACAGCAAATTGTATACAATTCAAAAACATCTCTGGAGCAATTGTTTATTACAATATTGATCATTATCATGGGTATTATTTTTTATGCTTACGCACATATTTCATAGTGGATAAAAGATTTGTGAATGAAATGGAGGTggattcaaataaaatgttgtACAGAAAACAAAATTGACGTAAGCTATCGTTTCTACTGGTGTTGAAGCTTGTGATTTGTTTTAGCTGTCAAAGGGGATTCTAGATTGTTCATTCTCATTTCATCGCCTCTTATATTGGCACTATTTTCCCTTTGTCTTTGAATTCTCAAATTTGGCTTCTGCGATAAATAATTGGAGACAGCATTTTAAGGCTTTTGCAAACAAATAGTGAATCCAGTGTTCTTTGTGATCACTCCTGTGGGGCCTTGTTGTGAGGTTTATGGAGCTGGTGGTCAATGCTCTCTTGCAAACCAAAAACAGTCTAATTGGTAAAGTGATCATGTATGTTAATGTTATGTGAGCTGTAATTGGAATGGTCACGGATATTTAGACCTCCCCCTTTGCTTCTCAGGTTGTGTCACCCTTTTAACTTAAAATCATTTTTGTTTCTTAATTGGAATTTGAAATGTTAAGATgtttaaataaaacaatgtttGTAATTTCTCATATGTGGTAATAAATGGATGTTACACGTC
>XM_021582162.2
TGAATTGTTTAgctattactgcattgttggcgctaggaacacatttcgctacacccgcaacgacatctgctaaatatgtgaggAGTGAGTCTGCCTGATCAGAGGgcgtagggatgaccagggacgttctcttgGTGATTTGTAGGAGCCATGGCCCGTACCAAGCAGACAGCCCGTAAATCTACTGGAGGCAAAGCCCCACGTAAGCAGCTGGCCACCAAAGCTGCCCGCAAGAGTGCCCCTTCTACTGGTGGGGTCAAGAAGCCCCATCGTTACAGACCTGGTACTGTGGCCCTGCGTGAGATCCGTCGTTACCagaagtccactgagctgctgatcCGCAAGCTGCCATTCCAGCGCCTGGTGAGAGAAATTGCTCAGGACTTCAAGACTGACCTGCGTTTCCAGAGTGCAGCCATTGGGGCCCTGCAGGAGGCCAGCGAGGCTTACCTGGTTGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGTCGTATCCGTGGGGAGCGTGCTTAGACGCCTACCTGAtttacctctcctcccctcaacagtctgccctccccttccctccccctctcctcttatgTTGGTAGTGATTTAGAGAAACAATGATTATGATAAGAATAATGTGTATAGTGGTGTTTTCTTAGTACTCTCGGCAGCAGACTATTATAGGGTACTCTTTTGTGCATGTACCTGCTTGTTGCTGGTCAGATCccccaccatcacaccatcaAATCAGATGTTCCATTGTCATGATGCCGTGTGGAGAGATCAGATAAAACAAGACAGGGAATCTGACATAGGTTGTGGTCGCAGGAGGATGGGGTTAGGTTTTTGTCTGCAGAGTGGAGTACCTCTTTCTCTGCAGGGTGCTAGAACAACTGCCCTAGTCCCCTTCCTCCTTCCCCACTCTTCCAGTGAAATAGAGACTGAGCTGGTATCTTTCATGGCAACACATGAACGAGagtccagcccccccccccccccccccccccccccccttgtgtgTGAGCGTGTAGATTCTGATCAGCACAGCAAATTGTATACAATTCAAAAACATCTCTGGAGCAATTGTTTATTACAATATTGATCATTATCATGGGTATTATTTTTTATGCTTACGCACATATTTCATAGTGGATAAAAGATTTGTGAATGAAATGGAGGTggattcaaataaaatgttgtACAGAAAACAAAATTGACGTAAGCTATCGTTTCTACTGGTGTTGAAGCTTGTGATTTGTTTTAGCTGTCAAAGGGGATTCTAGATTGTTCATTCTCATTTCATCGCCTCTTATATTGGCACTATTTTCCCTTTGTCTTTGAATTCTCAAATTTGGCTTCTGCGATAAATAATTGGAGACAGCATTTTAAGGCTTTTGCAAACAAATAGTGAATCCAGTGTTCTTTGTGATCACTCCTGTGGGGCCTTGTTGTGAGGTTTATGGAGCTGGTGGTCAATGCTCTCTTGCAAACCAAAAACAGTCTAATTGGTAAAGTGATCATGTATGTTAATGTTATGTGAGCTGTAATTGGAATGGTCACGGATATTTAGACCTCCCCCTTTGCTTCTCAGGTTGTGTCACCCTTTTAACTTAAAATCATTTTTGTTTCTTAATTGGAATTTGAAATGTTAAGATgtttaaataaaacaatgtttGTAATTTCTCATATGTGGTAATAAATGGATGTTACACGTC

Function

NR:

description
PREDICTED: histone H3.3 isoform X1

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006629 lipid metabolic process biological_process
GO:1902340 negative regulation of chromosome condensation biological_process
GO:0006997 nucleus organization biological_process
GO:0007596 blood coagulation biological_process
GO:0009725 response to hormone biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007155 cell adhesion biological_process
GO:0090230 regulation of centromere complex assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005700 polytene chromosome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K11253 H3; histone H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961998.1 False 1694 mRNA 0.45 4 10005340 10007581
XM_021582161.2 False 1730 mRNA 0.46 4 10005340 10008350
XM_021582160.2 False 1764 mRNA 0.46 4 10005340 10008380
XM_021582162.2 True 1751 mRNA 0.46 4 10005340 10008987

Neighbor

gene id symbol gene type direction distance location
LOC110503696 LOC106612616 coding downstream 21298 9979013 ~ 9984042 (-)
LOC110503694 NA coding downstream 63572 9924311 ~ 9941768 (-)
LOC110503691 LOC106612619 coding downstream 107402 9892221 ~ 9897938 (-)
LOC110503315 NA coding downstream 118279 9880097 ~ 9887061 (-)
LOC110503688 LOC106612623 coding downstream 142759 9848222 ~ 9862581 (-)
LOC110503698 LOC107388308 coding upstream 374 10009361 ~ 10012404 (-)
LOC110503704 LOC106612609 coding upstream 95579 10104566 ~ 10114248 (-)
LOC110503316 prss16 coding upstream 120905 10129892 ~ 10139994 (-)
LOC110503705 hnrnpl coding upstream 134041 10143028 ~ 10153094 (-)
LOC110503706 LOC105026808 coding upstream 143303 10152290 ~ 10159142 (-)
G1901088 NA non-coding downstream 18730 9986142 ~ 9986610 (-)
G1901087 NA non-coding downstream 19446 9984308 ~ 9985894 (-)
G1901082 NA non-coding downstream 31914 9972794 ~ 9973426 (-)
G1901047 NA non-coding downstream 61903 9888883 ~ 9943437 (-)
G1901071 NA non-coding downstream 67888 9932534 ~ 9937452 (-)
G1901100 NA non-coding upstream 17866 10026853 ~ 10027069 (-)
G1901126 NA non-coding upstream 63251 10072238 ~ 10072472 (-)
G1901128 NA non-coding upstream 69904 10078891 ~ 10079273 (-)
G1901129 NA non-coding upstream 70355 10079342 ~ 10079572 (-)
G1901131 NA non-coding upstream 71686 10080673 ~ 10080949 (-)
LOC110503680 LOC106612628 other downstream 431191 9570867 ~ 9579939 (-)
G1899875 NA other downstream 1957366 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3545275 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3773532 6181377 ~ 6231808 (-)
G1896030 NA other downstream 4136122 5868896 ~ 5869218 (-)
G1901206 NA other upstream 196233 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 390055 10399042 ~ 10399857 (-)
G1901405 NA other upstream 607937 10616924 ~ 10617481 (-)
G1901516 NA other upstream 844844 10853831 ~ 10856437 (-)
LOC110503734 rnf7 other upstream 906567 10915471 ~ 10918092 (-)

Expression


Co-expression Network