LOC110503698 (LOC107388308)


Basic Information

Item Value
gene id LOC110503698
gene name LOC107388308
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10009361 ~ 10012404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582159.2
TGTAGAAAAGTTGGTATCTCTTGTCGCAGCAGATGCATTGTGGGTAACCTGCCATTTTAACCCAATATAGGACTCCATTCTGTTGTGGGAACAACGCAATAAATAAGGACACGAGACCAGTTTCACATTTAAACATTAGCTGTTGTATCAAAGGTAATTTGTAGGAGCCATGGCCCGTACCAAGCAGACAGCCCGTAAATCTACTGGAGGCAAAGCCCCACGTAAGCAGCTGGCCACCAAAGCTGCCCGCAAGAGTGCCCCTTCTACTGGTGGGGTCAAGAAGCCCCATCGCTACAGACCTGGTACTGTGGCCCTGCGTGAGATCCGTAGGTACCagaagtccactgagctgctgatcCGCAAGCTGCCCTTCCAGCGCCTGGTGAGAGAAATCGCTCAGGACTTCAAGACTGACCTGCGTTTCCAGAGTGCAGCTATTGGAGCCCTGCAGGAGGCCAGCGAGGCTTACCTGGTTGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGTCGTATCCGTGGGGAGCGTGCTTAGACGCCTCCCCTTTATTTTTATATACCTCAGTCTGTCTTTTCCTCCCTTCCCACTTATCCTTATAAGGAGCTTGATTTGAGTAATGATGTGACACAAGTAAACTGTAGTCTTGTCCCCCTTAGTTCTCTTAGCAGCAGACTTTTAGGGTACTTTGTATCTGTTTTGAAGCTGATCTGAGTCACACCTTTGTGTATGCAACTCGACACAGCAAAGGGTGCATGCATGAAGCATCTTGGGCAAGCATTTCCCCCTCctactattacattatgacagggTTGGTTTTCTAATTGATAAACATGTGGTGTTTTTACATGTACCctttatcatttttttttacaactagTGTTTCTACTGTTTACGTGATACATTTACAAATGGTTAATTGTGTTCTGAAATTGATCAATAAAAATATGACTTTGCATGATTCAAAATATTGCATAGGCCTATGTAGCACAATGTTTATGTATTTCTCCCATGTTTTTATCCTGGTAATATTTTAGTTTCTTTCTCAGGTTGTGATGCCCTTTTCACACtgatttcgtttttttttttttttttttacatttttaagcAGATATTTGTAAAAATCCAGAATTCTCATACAAAGGTGATAAACTACTGTTCCACAACT

Function

NR:

description
PREDICTED: histone H3.3 isoform X1

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006629 lipid metabolic process biological_process
GO:1902340 negative regulation of chromosome condensation biological_process
GO:0006997 nucleus organization biological_process
GO:0007596 blood coagulation biological_process
GO:0009725 response to hormone biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007155 cell adhesion biological_process
GO:0090230 regulation of centromere complex assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005700 polytene chromosome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K11253 H3; histone H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582159.2 True 1211 mRNA 0.44 4 10009361 10012404

Neighbor

gene id symbol gene type direction distance location
LOC110503700 LOC107388308 coding downstream 374 10005340 ~ 10008987 (-)
LOC110503696 LOC106612616 coding downstream 25319 9979013 ~ 9984042 (-)
LOC110503694 NA coding downstream 67593 9924311 ~ 9941768 (-)
LOC110503691 LOC106612619 coding downstream 111423 9892221 ~ 9897938 (-)
LOC110503315 NA coding downstream 122300 9880097 ~ 9887061 (-)
LOC110503704 LOC106612609 coding upstream 92162 10104566 ~ 10114248 (-)
LOC110503316 prss16 coding upstream 117488 10129892 ~ 10139994 (-)
LOC110503705 hnrnpl coding upstream 130624 10143028 ~ 10153094 (-)
LOC110503706 LOC105026808 coding upstream 139886 10152290 ~ 10159142 (-)
LOC110503317 LOC106612604 coding upstream 148490 10160894 ~ 10263430 (-)
G1901088 NA non-coding downstream 22751 9986142 ~ 9986610 (-)
G1901087 NA non-coding downstream 23467 9984308 ~ 9985894 (-)
G1901082 NA non-coding downstream 35935 9972794 ~ 9973426 (-)
G1901071 NA non-coding downstream 71909 9932534 ~ 9937452 (-)
G1900968 NA non-coding downstream 86683 9921871 ~ 9922678 (-)
G1901100 NA non-coding upstream 14449 10026853 ~ 10027069 (-)
G1901126 NA non-coding upstream 59834 10072238 ~ 10072472 (-)
G1901128 NA non-coding upstream 66487 10078891 ~ 10079273 (-)
G1901129 NA non-coding upstream 66938 10079342 ~ 10079572 (-)
G1901131 NA non-coding upstream 68269 10080673 ~ 10080949 (-)
LOC110503680 LOC106612628 other downstream 435212 9570867 ~ 9579939 (-)
G1899875 NA other downstream 1961387 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3549296 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3777553 6181377 ~ 6231808 (-)
G1896030 NA other downstream 4140143 5868896 ~ 5869218 (-)
G1901206 NA other upstream 192816 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 386638 10399042 ~ 10399857 (-)
G1901405 NA other upstream 604520 10616924 ~ 10617481 (-)
G1901516 NA other upstream 841427 10853831 ~ 10856437 (-)
LOC110503734 rnf7 other upstream 903150 10915471 ~ 10918092 (-)

Expression


Co-expression Network