LOC110503705 (hnrnpl)


Basic Information

Item Value
gene id LOC110503705
gene name hnrnpl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10143028 ~ 10153094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582172.2
accagggttgttctcttgataagtgtgtgaagtgtgtgacCATTCTTCTGTCCtcctaagcattcaaaatgtaatgagtactctTTGGCGTCAGGTAAAATGTAGTAAAAAGTACTTTTTATTTGGGAATAAAGtgaaagttgtcaaatataaatagtgaagtacagataccacttaagtagtatttttacttaagtactttacaccactgattatGTGCCAGCAGGGTTGGAGCTGTGATTGGTTCTGAGATGGGTGCTGGGCTAGTTGAGTGGACATGCTGGGACAAGATGGGTGCCGGCCGGGCTGCCTGTTGATTGGACATGCTGTGTCTGCCCTGTTCTTACACCATTCTCTGTCTGTTTCAGTCGTTCCAGATCTCCAAGCCAGAAAAAGAGCCCCACCCCAGGGGAAGATTGATTTGAAGACTAAACTCGTCCCCATCCCCCTCCGACCAACTGGCTTTAGCCTTGCagctatttgttttgtctttgttccCTGCATTGATTAGAATCTACCCCTACCTTTCTGATGCTGTATAATTACACTCTACAGGATTAGTTTCATATCTAACCATGCATCCCTTACATGATGTCACATTCCTAAAATGGCTCTTGTGTGTGTCAAAACAGTTCAAATAGCTAATTTCAGAAGTGGGATTTGTGAACCACAACTTTGTATTTGTTATTATTTCTTATCTACTATATTCAGCGTGGCATTGCGTTAAAGAGCTGTAAGATACTTTAAATGTTGCTTTCCCTTTTTTATGACACTGGCAGATTTTGGAATAAATCGACACATTAATTCAGTATTATTCTTTTGAACATTGGGAACATCTACAGAATGTGTCTTACATGGAGACGTTTTATAGTGAAAAAGGAAATGACATGGTATGTTTGCCATGAGAAATGGTTTGCAGTCAATAAGTTTTCGTTTTCAAACTTACACCCCACCTAATGCGTCGTACAtaaaaacagcccttagctgtggcaTATTTGTAATCTTGGCTCTTTTCAACCTTGCTGATTAAAGTCCATTCTCAAAAAGCTGTAACCACCTAGATCATTCGCCTggattgaaaatgtatttattgtagAAATAAAGATGATCTTCACTTTATTTTTTACAGATAACAGATCAATACAGTAGTAGTGGTTTGAGCTCTGACTATAAGATAAATTGGTGATGGCGTTATTGACGTGCCTTTTAGGCCAATTGGAAACCGCAGCGGACTCTTCAAGGCGGGCCCATGTGTGTGTCTCAATACTTTCCCGTCCATTTCATACGGTCGCTGCTACCAACCTTATTAACTGGGACAACATGGCTATGGCAGGCCGTTATTACGAAGGCGGCAGGGCAACGAAAAGACTAAAAACCAACGACGGAATGACAACGGAGGGCTATGATGACCCACATAAGACGCTTCCCTCTCCAGTTGTGCATGTGCGGGGCTTGGTGGACGGCATTACGGAGGCTGACCTTGTGGAGGCTCTGCAGGAGTTTGGAGCTATTAGCTATGTGGTGGTTATGCCCAAGAAGCGTCAAGCCCTGGTTGAGTACGAGGATCTGAATGGGTCGTGTACTGCTGTGACGTATGCCAATGACAACCAGATCTACATTTCCGGGCACCCAGCCTTTGTCAACTACTCCACCAGCCAGAAGATCTCCCGGCCAGGCGACCCGGATGATTCTAGAAGTGTCAACAATGTGCTACTTCTCACCATCATGAACCCAATCTACCCCGTTACCACGGATGTGCTCTACACGGTCTGCAATAACTGCGGCCCTGTCCACAGGATTGTCATCTTCCGGAAGAATGGTGTTCAGGCCATGGTGGAGTTTGATTCGGTGCAGAGTGCACAGAGGGCGAAGGCCTCCCTCAACGGGGCAGACATCTACTCTGGCTGCTGCACCCTGAAGATCGAATATGCCAAGCCAACTCGTCTCAATGTGTTCAAGAATGACCAGGACACTTGGGACTACACCAACCCCAACCTGGGTGGTCAAGATGCAGAAGCTGATGGCAATGGGAGCaatgctggagAAGATGGGAGTGCCAACCCCAACAAGCGTGTGAGAGCGCCGGCTCTGCTGGGAGACCACCCTCCAGAGTACGCTGGTGGTTACCATGGATATGACGAAAGCGGTTATGGTCCCCCGCCCCCCCCACACTACAGCGAGGGCCGTCGCATGGGTCCTCCCATGAGGGGACGAGGGGGGGCACACAGCTACGGTGGGGGACCTGGCTACggccctccccctccaccccccggCGAGTACAGTGCCCACGCAGACTCCCCTGTAGTCATGGTCTACGGTCTGGAGCCTGCCAAGATGAATGCAGATAAGGTGTTCAACGTTTTCTGTCTCTACGGCAATGTGGAGCGGGTGAAGTTTATGAAGAGTAAGCCAGGAGCAGCCATGGTGGAGATGGGAGACTGTTACGCTGTGGATCGGGCCATCACTCACCTCAACAACAACTTCCTGTTTGGACAGAAGCTCAACGTCTGTGTGTCTAAGCAGCAGGCCATCATGCCCGGACAGTCTTACGAGCTGGAGGACGGCAGCACCAGCTTTAAGGACTTCCACGGCTCCCGCAACAACCGCTTCACCTCCCCAGAACAGGCTGCCAAGAACCGCATTCAGCACCCCAGCAGCGTCCTGCACTTCTTCAACGCCCAGCCAGACTCGTCCGTAGAGATTTTCACTCAGATCTGTGAAGAGGTTTGTGTCAAAGCCCCTGCAAACATCAAACTTTTCACGGGAAAGAGTGCAGGTCCAGGTGAGCGCAGCTCTTCAGGGCTGTTGGAGTGGGAGTCGATCAACGACGCCATGGAAGCCTTGTCCATGATAAACCACTACCAGATGAAGAACGCAACTGGCCCGTACCCATACACCCTCAAGCTGTGCTTTTCTACAGCTCAGCATGCAACCTAAACAGCCACCACAATCATGGACAATGTTCCACATCAAACCATCGTCCCTACAGTCTTCACCCCTATTTTGACCATGTCTGTTTTAGGCAGTTAATGAGTTTGTCCGCAGTCATATCGGTTTGTCCTTATTTGATATTGAGCTCATAAAATCGAGTTGTGTGAACTGGTAAAGTAGATTGTTTTTATTCCTGATGGATGAAATAAGGAAAGGCTTTTGTATAAGTATTGTTTTGCATCTTTTATTACTCcgtgtgttttttgttttatcTCTTCCTGCTCAGTACCATGCCTCTACAAGTCTGTATTTGGAGGAAGGAGTGTTTTATTTGGTTGGAAAACATCAATTTCAAGTAATGTATCTTTTGAGAGCCCTCAATAAAGGAACTTTATTCCAGATTGCCAGTTAA
>XM_021582174.2
gaccagggttgttctcttgataagtgtgtgaagtgtgtgacCATTCTTCTGTCCtcctaagcattcaaaatgtaatgagtactctTTGGCGTCAGGTAAAATGTAGTAAAAAGTACTTTTTATTTGGGAATAAAGtgaaagttgtcaaatataaatagtgaagtacagataccacttaagtagtatttttacttaagtactttacaccactgattatGTGCCAGCAGGGTTGGAGCTGTGATTGGTTCTGAGATGGGTGCTGGGCTAGTTGAGTGGACATGCTGGGACAAGATGGGTGCCGGCCGGGCTGCCTGTTGATTGGACATGCTGTGTCTGCCCTGTTCTTACACCATTCTCTGTCTGTTTCAGTCGTTCCAGATCTCCAAGCCAGAAAAAGAGCCCCACCCCAGGGGAAGATTGATTTGAAGACTAAACTCGTCCCCATCCCCCTCCGACCAACTGGCTTTAGCCTTGCagctatttgttttgtctttgttccCTGCATTGATTAGAATCTACCCCTACCTTTCTGATGCTGTATAATTACACTCTACAGGATTAGTTTCATATCTAACCATGCATCCCTTACATGATGTCACATTCCTAAAATGGCTCTTGTGTGTGTCAAAACAGTTCAAATAGCTAATTTCAGAAGTGGGATTTGTGAACCACAACTTTGTATTTGTTATTATTTCTTATCTACTATATTCAGCGTGGCATTGCGTTAAAGAGCTGTAAGATACTTTAAATGTTGCTTTCCCTTTTTTATGACACTGGCAGATTTTGGAATAAATCGACACATTAATTCAGTATTATTCTTTTGAACATTGGGAACATCTACAGAATGTGTCTTACATGGAGACGTTTTATAGTGAAAAAGGAAATGACATGGTATGTTTGCCATGAGAAATGGTTTGCAGTCAATAAGTTTTCGTTTTCAAACTTACACCCCACCTAATGCGTCGTACAtaaaaacagcccttagctgtggcaTATTTGTAATCTTGGCTCTTTTCAACCTTGCTGATTAAAGTCCATTCTCAAAAAGCTGTAACCACCTAGATCATTCGCCTggattgaaaatgtatttattgtagAAATAAAGATGATCTTCACTTTATTTTTTACAGATAACAGATCAATACAGTAGTAGTGGTTTGAGCTCTGACTATAAGATAAATTGGTGATGGCGTTATTGACGTGCCTTTTAGGCCAATTGGAAACCGCAGCGGACTCTTCAAGGCGGGCCCATGTGTGTGTCTCAATACTTTCCCGTCCATTTCATACGGTCGCTGCTACCAACCTTATTAACTGGGACAACATGGCTATGGCAGGCCGTTATTACGAAGGCGGCAGGGCAACGAAAAGACTAAAAACCAACGACGGAATGACAACGGAGGGCTATGATGACCCACATAAGACGCTTCCCTCTCCAGTTGTGCATGTGCGGGGCTTGGTGGACGGCATTACGGAGGCTGACCTTGTGGAGGCTCTGCAGGAGTTTGGAGCTATTAGCTATGTGGTGGTTATGCCCAAGAAGCGTCAAGCCCTGGTTGAGTACGAGGATCTGAATGGGTCGTGTACTGCTGTGACGTATGCCAATGACAACCAGATCTACATTTCCGGGCACCCAGCCTTTGTCAACTACTCCACCAGCCAGAAGATCTCCCGGCCAGGCGACCCGGATGATTCTAGAAGTGTCAACAATGTGCTACTTCTCACCATCATGAACCCAATCTACCCCGTTACCACGGATGTGCTCTACACGGTCTGCAATAACTGCGGCCCTGTCCACAGGATTGTCATCTTCCGGAAGAATGGTGTTCAGGCCATGGTGGAGTTTGATTCGGTGCAGAGTGCACAGAGGGCGAAGGCCTCCCTCAACGGGGCAGACATCTACTCTGGCTGCTGCACCCTGAAGATCGAATATGCCAAGCCAACTCGTCTCAATGTGTTCAAGAATGACCAGGACACTTGGGACTACACCAACCCCAACCTGGGTGGTCAAGAAGATGGGAGTGCCAACCCCAACAAGCGTGTGAGAGCGCCGGCTCTGCTGGGAGACCACCCTCCAGAGTACGCTGGTGGTTACCATGGATATGACGAAAGCGGTTATGGTCCCCCGCCCCCCCCACACTACAGCGAGGGCCGTCGCATGGGTCCTCCCATGAGGGGACGAGGGGGGGCACACAGCTACGGTGGGGGACCTGGCTACggccctccccctccaccccccggCGAGTACAGTGCCCACGCAGACTCCCCTGTAGTCATGGTCTACGGTCTGGAGCCTGCCAAGATGAATGCAGATAAGGTGTTCAACGTTTTCTGTCTCTACGGCAATGTGGAGCGGGTGAAGTTTATGAAGAGTAAGCCAGGAGCAGCCATGGTGGAGATGGGAGACTGTTACGCTGTGGATCGGGCCATCACTCACCTCAACAACAACTTCCTGTTTGGACAGAAGCTCAACGTCTGTGTGTCTAAGCAGCAGGCCATCATGCCCGGACAGTCTTACGAGCTGGAGGACGGCAGCACCAGCTTTAAGGACTTCCACGGCTCCCGCAACAACCGCTTCACCTCCCCAGAACAGGCTGCCAAGAACCGCATTCAGCACCCCAGCAGCGTCCTGCACTTCTTCAACGCCCAGCCAGACTCGTCCGTAGAGATTTTCACTCAGATCTGTGAAGAGGTTTGTGTCAAAGCCCCTGCAAACATCAAACTTTTCACGGGAAAGAGTGCAGGTCCAGGTGAGCGCAGCTCTTCAGGGCTGTTGGAGTGGGAGTCGATCAACGACGCCATGGAAGCCTTGTCCATGATAAACCACTACCAGATGAAGAACGCAACTGGCCCGTACCCATACACCCTCAAGCTGTGCTTTTCTACAGCTCAGCATGCAACCTAAACAGCCACCACAATCATGGACAATGTTCCACATCAAACCATCGTCCCTACAGTCTTCACCCCTATTTTGACCATGTCTGTTTTAGGCAGTTAATGAGTTTGTCCGCAGTCATATCGGTTTGTCCTTATTTGATATTGAGCTCATAAAATCGAGTTGTGTGAACTGGTAAAGTAGATTGTTTTTATTCCTGATGGATGAAATAAGGAAAGGCTTTTGTATAAGTATTGTTTTGCATCTTTTATTACTCcgtgtgttttttgttttatcTCTTCCTGCTCAGTACCATGCCTCTACAAGTCTGTATTTGGAGGAAGGAGTGTTTTATTTGGTTGGAAAACATCAATTTCAAGTAATGTATCTTTTGAGAGCCCTCAATAAAGGAACTTTATTCCAGATTGCCAGTTAA
>XM_036961151.1
gaccagggttgttctcttgataagtgtgtgaagtgtgtgacCATTCTTCTGTCCtcctaagcattcaaaatgtaatgagtactctTTGGCGTCAGGTAAAATGTAGTAAAAAGTACTTTTTATTTGGGAATAAAGtgaaagttgtcaaatataaatagtgaagtacagataccacttaagtagtatttttacttaagtactttacaccactgattatGTGCCAGCAGGGTTGGAGCTGTGATTGGTTCTGAGATGGGTGCTGGGCTAGTTGAGTGGACATGCTGGGACAAGATGGGTGCCGGCCGGGCTGCCTGTTGATTGGACATGCTGTGTCTGCCCTGTTCTTACACCATTCTCTGTCTGTTTCAGTCGTTCCAGATCTCCAAGCCAGAAAAAGAGCCCCACCCCAGGGGAAGATTGATTTGAAGACTAAACTCGTCCCCATCCCCCTCCGACCAACTGGCTTTAGCCTTGCagctatttgttttgtctttgttccCTGCATTGATTAGAATCTACCCCTACCTTTCTGATGCTGTATAATTACACTCTACAGGATTAGTTTCATATCTAACCATGCATCCCTTACATGATGTCACATTCCTAAAATGGCTCTTGTGTGTGTCAAAACAGTTCAAATAGCTAATTTCAGAAGTGGGATTTGTGAACCACAACTTTGTATTTGTTATTATTTCTTATCTACTATATTCAGCGTGGCATTGCGTTAAAGAGCTGTAAGATACTTTAAATGTTGCTTTCCCTTTTTTATGACACTGGCAGATTTTGGAATAAATCGACACATTAATTCAGTATTATTCTTTTGAACATTGGGAACATCTACAGAATGTGTCTTACATGGAGACGTTTTATAGTGAAAAAGGAAATGACATGGTATGTTTGCCATGAGAAATGGTTTGCAGTCAATAAGTTTTCGTTTTCAAACTTACACCCCACCTAATGCGTCGTACAtaaaaacagcccttagctgtggcaTATTTGTAATCTTGGCTCTTTTCAACCTTGCTGATTAAAGTCCATTCTCAAAAAGCTGTAACCACCTAGATCATTCGCCTggattgaaaatgtatttattgtagAAATAAAGATGATCTTCACTTTATTTTTTACAGATAACAGATCAATACAGTAGTAGTGGTTTGAGCTCTGACTATAAGATAAATTGGTGATGGCGTTATTGACGTGCCTTTTAGGCCAATTGGAAACCGCAGCGGACTCTTCAAGGCGGGCCCATGTGTGTGTCTCAATACTTTCCCGTCCATTTCATACGGTCGCTGCTACCAACCTTATTAACTGGGACAACATGGCTATGGCAGGCCGTTATTACGAAGGCGGCAGGGCAACGAAAAGACTAAAAACCAACGACGGAATGACAACGGAGGGCTATGATGACCCACATAAGACGCTTCCCTCTCCAGTTGTGCATGTGCGGGGCTTGGTGGACGGCATTACGGAGGCTGACCTTGTGGAGGCTCTGCAGGAGTTTGGAGCTATTAGCTATGTGGTGGTTATGCCCAAGAAGCGTCAAGCCCTGGTTGAGTACGAGGATCTGAATGGGTCGTGTACTGCTGTGACGTATGCCAATGACAACCAGATCTACATTTCCGGGCACCCAGCCTTTGTCAACTACTCCACCAGCCAGAAGATCTCCCGGCCAGGCGACCCGGATGATTCTAGAAGTGTCAACAATGTGCTACTTCTCACCATCATGAACCCAATCTACCCCGTTACCACGGATGTGCTCTACACGGTCTGCAATAACTGCGGCCCTGTCCACAGGATTGTCATCTTCCGGAAGAATGGTGTTCAGGCCATGGTGGAGTTTGATTCGGTGCAGAGTGCACAGAGGGCGAAGGCCTCCCTCAACGGGGCAGACATCTACTCTGGCTGCTGCACCCTGAAGATCGAATATGCCAAGCCAACTCGTCTCAATGTGTTCAAGAATGACCAGGACACTTGGGACTACACCAACCCCAACCTGGGTGGTCAAGCTGGTGGTTACCATGGATATGACGAAAGCGGTTATGGTCCCCCGCCCCCCCCACACTACAGCGAGGGCCGTCGCATGGGTCCTCCCATGAGGGGACGAGGGGGGGCACACAGCTACGGTGGGGGACCTGGCTACggccctccccctccaccccccggCGAGTACAGTGCCCACGCAGACTCCCCTGTAGTCATGGTCTACGGTCTGGAGCCTGCCAAGATGAATGCAGATAAGGTGTTCAACGTTTTCTGTCTCTACGGCAATGTGGAGCGGGTGAAGTTTATGAAGAGTAAGCCAGGAGCAGCCATGGTGGAGATGGGAGACTGTTACGCTGTGGATCGGGCCATCACTCACCTCAACAACAACTTCCTGTTTGGACAGAAGCTCAACGTCTGTGTGTCTAAGCAGCAGGCCATCATGCCCGGACAGTCTTACGAGCTGGAGGACGGCAGCACCAGCTTTAAGGACTTCCACGGCTCCCGCAACAACCGCTTCACCTCCCCAGAACAGGCTGCCAAGAACCGCATTCAGCACCCCAGCAGCGTCCTGCACTTCTTCAACGCCCAGCCAGACTCGTCCGTAGAGATTTTCACTCAGATCTGTGAAGAGGTTTGTGTCAAAGCCCCTGCAAACATCAAACTTTTCACGGGAAAGAGTGCAGGTCCAGGTGAGCGCAGCTCTTCAGGGCTGTTGGAGTGGGAGTCGATCAACGACGCCATGGAAGCCTTGTCCATGATAAACCACTACCAGATGAAGAACGCAACTGGCCCGTACCCATACACCCTCAAGCTGTGCTTTTCTACAGCTCAGCATGCAACCTAAACAGCCACCACAATCATGGACAATGTTCCACATCAAACCATCGTCCCTACAGTCTTCACCCCTATTTTGACCATGTCTGTTTTAGGCAGTTAATGAGTTTGTCCGCAGTCATATCGGTTTGTCCTTATTTGATATTGAGCTCATAAAATCGAGTTGTGTGAACTGGTAAAGTAGATTGTTTTTATTCCTGATGGATGAAATAAGGAAAGGCTTTTGTATAAGTATTGTTTTGCATCTTTTATTACTCcgtgtgttttttgttttatcTCTTCCTGCTCAGTACCATGCCTCTACAAGTCTGTATTTGGAGGAAGGAGTGTTTTATTTGGTTGGAAAACATCAATTTCAAGTAATGTATCTTTTGAGAGCCCTCAATAAAGGAACTTTATTCCAGATTGCCAGTTAA

Function

symbol description
hnrnpl Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in central nervous system and neural keel. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; lung cancer; and systemic scleroderma. Orthologous to human HNRNPL (heterogeneous nuclear ribonucleoprotein L).

NR:

description
heterogeneous nuclear ribonucleoprotein L-like isoform X4

GO: NA

KEGG:

id description
K13159 HNRNPL; heterogeneous nuclear ribonucleoprotein L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582172.2 False 3343 mRNA 0.47 14 10143028 10153093
XM_021582174.2 False 3308 mRNA 0.47 13 10143028 10153094
XM_036961151.1 True 3236 mRNA 0.47 12 10143028 10153094

Neighbor

gene id symbol gene type direction distance location
LOC110503316 prss16 coding downstream 3034 10129892 ~ 10139994 (-)
LOC110503704 LOC106612609 coding downstream 28780 10104566 ~ 10114248 (-)
LOC110503698 LOC107388308 coding downstream 130624 10009361 ~ 10012404 (-)
LOC110503700 LOC107388308 coding downstream 134041 10005340 ~ 10008987 (-)
LOC110503696 LOC106612616 coding downstream 158986 9979013 ~ 9984042 (-)
LOC110503317 LOC106612604 coding upstream 7800 10160894 ~ 10263430 (-)
LOC118944110 NA coding upstream 134014 10287108 ~ 10301655 (-)
LOC110503707 LOC106612603 coding upstream 149948 10303042 ~ 10351767 (-)
zgc:85932 LOC106612602 coding upstream 199506 10352600 ~ 10363236 (-)
if3c LOC106612601 coding upstream 213945 10367039 ~ 10370494 (-)
G1901162 NA non-coding downstream 13622 10128930 ~ 10129406 (-)
G1901147 LOC106612610 non-coding downstream 42462 10096286 ~ 10100566 (-)
G1901146 NA non-coding downstream 50131 10092560 ~ 10092897 (-)
G1901212 NA non-coding upstream 66329 10219423 ~ 10223013 (-)
G1901251 NA non-coding upstream 122747 10275841 ~ 10276160 (-)
G1901258 NA non-coding upstream 130094 10283188 ~ 10283398 (-)
G1901072 LOC107388308 other downstream 130674 10005372 ~ 10012354 (-)
LOC110503680 LOC106612628 other downstream 568879 9570867 ~ 9579939 (-)
G1899875 NA other downstream 2095054 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3682963 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3911220 6181377 ~ 6231808 (-)
G1901206 NA other upstream 52126 10205220 ~ 10205948 (-)
G1901302 LOC106612600 other upstream 245948 10399042 ~ 10399857 (-)
G1901405 NA other upstream 463830 10616924 ~ 10617481 (-)
G1901516 NA other upstream 700737 10853831 ~ 10856437 (-)
LOC110503734 rnf7 other upstream 762460 10915471 ~ 10918092 (-)

Expression


Co-expression Network