Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110503705 |
| gene name | hnrnpl |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 10143028 ~ 10153094 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| hnrnpl | Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in central nervous system and neural keel. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; lung cancer; and systemic scleroderma. Orthologous to human HNRNPL (heterogeneous nuclear ribonucleoprotein L). |
| description |
|---|
| heterogeneous nuclear ribonucleoprotein L-like isoform X4 |
| id | description |
|---|---|
| K13159 | HNRNPL; heterogeneous nuclear ribonucleoprotein L |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021582172.2 | False | 3343 | mRNA | 0.47 | 14 | 10143028 | 10153093 |
| XM_021582174.2 | False | 3308 | mRNA | 0.47 | 13 | 10143028 | 10153094 |
| XM_036961151.1 | True | 3236 | mRNA | 0.47 | 12 | 10143028 | 10153094 |
10,138,000
10,140,000
10,142,000
10,144,000
10,146,000
10,148,000
10,150,000
10,152,000
10,154,000
10,156,000
10,158,000
10,160,000
NC_048588.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110503316 | prss16 | coding | downstream | 3034 | 10129892 ~ 10139994 (-) |
| LOC110503704 | LOC106612609 | coding | downstream | 28780 | 10104566 ~ 10114248 (-) |
| LOC110503698 | LOC107388308 | coding | downstream | 130624 | 10009361 ~ 10012404 (-) |
| LOC110503700 | LOC107388308 | coding | downstream | 134041 | 10005340 ~ 10008987 (-) |
| LOC110503696 | LOC106612616 | coding | downstream | 158986 | 9979013 ~ 9984042 (-) |
| LOC110503317 | LOC106612604 | coding | upstream | 7800 | 10160894 ~ 10263430 (-) |
| LOC118944110 | NA | coding | upstream | 134014 | 10287108 ~ 10301655 (-) |
| LOC110503707 | LOC106612603 | coding | upstream | 149948 | 10303042 ~ 10351767 (-) |
| zgc:85932 | LOC106612602 | coding | upstream | 199506 | 10352600 ~ 10363236 (-) |
| if3c | LOC106612601 | coding | upstream | 213945 | 10367039 ~ 10370494 (-) |
| G1901162 | NA | non-coding | downstream | 13622 | 10128930 ~ 10129406 (-) |
| G1901147 | LOC106612610 | non-coding | downstream | 42462 | 10096286 ~ 10100566 (-) |
| G1901146 | NA | non-coding | downstream | 50131 | 10092560 ~ 10092897 (-) |
| G1901212 | NA | non-coding | upstream | 66329 | 10219423 ~ 10223013 (-) |
| G1901251 | NA | non-coding | upstream | 122747 | 10275841 ~ 10276160 (-) |
| G1901258 | NA | non-coding | upstream | 130094 | 10283188 ~ 10283398 (-) |
| G1901072 | LOC107388308 | other | downstream | 130674 | 10005372 ~ 10012354 (-) |
| LOC110503680 | LOC106612628 | other | downstream | 568879 | 9570867 ~ 9579939 (-) |
| G1899875 | NA | other | downstream | 2095054 | 8046779 ~ 8047974 (-) |
| LOC110503590 | LOC106612705 | other | downstream | 3682963 | 6371958 ~ 6472758 (-) |
| LOC118944082 | NA | other | downstream | 3911220 | 6181377 ~ 6231808 (-) |
| G1901206 | NA | other | upstream | 52126 | 10205220 ~ 10205948 (-) |
| G1901302 | LOC106612600 | other | upstream | 245948 | 10399042 ~ 10399857 (-) |
| G1901405 | NA | other | upstream | 463830 | 10616924 ~ 10617481 (-) |
| G1901516 | NA | other | upstream | 700737 | 10853831 ~ 10856437 (-) |
| LOC110503734 | rnf7 | other | upstream | 762460 | 10915471 ~ 10918092 (-) |
