LOC110503317 (LOC106612604)


Basic Information

Item Value
gene id LOC110503317
gene name LOC106612604
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10160894 ~ 10263430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961149.1
GACTGACTGAGCGTGTTTGTGAGTGTTGTCTGAATGCGAGCCGATCCGCGGCTAGAACAGCAAAATTAACGGGAACAGTTTTTCATGTTAACAACAGCAATATGTGCCTTACGACCGCACCTGATTTGAGCTACTCTAAAAACTAAGATATAAGgtGAGCTAGTCCTACCCCTCCCAGCCACGCCCGGCATCTTCTCCCCGTGTCTCTCTTCGTCCGCCTCATCCATCTCTTCCCCCGGCATTCTCCGCCATGGcactcctctccaccactctctctgcctctgtccccttcctcctcttcctcctcctcccccttccttcgCCCTGCGCCCTGGAGTCtctacgaggaggaggaggagaggaagagaaccgCTCCATCTCCACCATGTCCTATCCCTCCATGTCTCCGGAGTTCTGGAGCAACAGCAGCACGGGGCTGGGCAGCAGTTCAAAGTGCTCGCAGCCGGTGGTGTGCAGGCCGGGCACCCTGCTGCCCGTGTGGAAGCCCCTGAGCCCCGGGCTGGGCGACCAGGTAGCCAGGGCCGTGGTCTACTTCACCTGTCTCATGTACATGTTCCTGGGAGTGTCCATCATCGCAGACCGCTTCATGGCCTCTATCGAGGTCATAACCTCACAGGAGAAGGAAGTGACCATCACCATGCCAGGTGGAGAGACGTCTGTTGCCACTGTACGTATCTGGAACGAGACGGTGTCCAACCTGACTCTGATGGCTCTAGGCTCCTCCGCCCCAGAGATCCTGCTGTCGGTCATAGAGGTGTGTGGGCACGGGTTTGAGGCGGGTGAGCTGGGCCCTGGCACCATTGTGGGCAGCGCCGCCTTCAACATGTTTGTGATCATCGCCATCTGTGTGTGGGTCATCCCTGAAGGAGAGACCAGGAAGATCAAACACCTGCGTGTGTTCTTCATCACAGCCTTCTGGAGTATCTTCGCCTATATCTggctcttcctcatcctctctgtCATCTCACCCGGAgtagtggagGTGTGGGAGGCCCTGGTCACCCTGCTCTACTTCCCAGTGTGTGTGATCCTGGCCTGGATCGCCGACCGACGCCTTCTTTTCTACAAGTACATGGCCAAGCGTTACCGCGCTGACAAGCACGGCATCGTCGTGGAGACGGAGGGGGACACAACTCCGAAAGGCTTCGAGATGATTATGGACGGAAAGTTCCCACCAAGGGGAGGGGCGGTGGGAATGATGCCCAGTGAGAACTGCCAGGATGGGGCCAACAATGCGGCGGGCACCGTGGCCTACCTGCCCCACTCCAACAGCACCATGGTGACCGTAGAGAATACCAAGGAGCTGGACGAGAGCCGCAAGGAGGTGATCCGCATCCTGAAGCAGCTGAAGCAGAAGTTTCCGGACAAGGAGCTGGATCAGCTGGTAGATCTAGCCAACTACTACGCCCTCCTCCATCAACAGAAGAGCCGCGCCTTCTACCGCATCCAGGCTACGCGCATGATGACCGGCGCCGGCAACGTGCTCAAGAGGCACGCCGCCGACCACTCTCGCCGCGCCGCCGCCGTGGACGAGGAAGTGGTCTGCGAGGACGATGACCTGGCTGAGTGCAGCCGCCTGGCGTTCGAGAGCACCCACAGCCAGTGTATGGAGAACTGCGGCGTACTGAGGTTGGCTGTGGTGTGTCAAGGGGGCCTGGGGGAGAGTACCTTCTACGTGGACTACCGGACCGAGGACGGCTCGGCCAACGCCGGGTCTGACTACGAGTACAGCGAGGGAACGCTGGTGTTCAAACCCGGAGATACCCGCAAGGAGATCAAGGTCGGCATCATCGATGATGACATCTTCGAGGAGGACGAGCACTTTTTCGTGCGGCTGCTCAACTTGCGCATCGGTGACGCCGAGGGGATGTTCGAGAGTGATGAGCCAGGTGCGAGACCCAAGGGTCGCCTGGTGGAGCCACTGGTCGCCACGGTGACCATCCTGGACGACGACCATGCTGGATTCTTCACATTCCGTAATCGGCTGGTGCGCGTCAGCGAGAGTGTTGGCACCATGGAGATCTCAGTGGTGCGGAACTCGGGCGCCCGCGGCACGGTGATCCTGCCCTATCACACGGAGGAGGGCACGGCGAAGGGGGGCGGCGTGGACTACGAGGACACCCAGGGAGAGCTGGAGTTCTCCAACGACCAGACAACtcAGACCCTGCAGGTGAGGATCATTGACGATGAGGAGTATGAGAAAAAGGAGAACTTCTTCATCGTACTAGAGGAACCACGCTGGCTGAAGAGGGGAATCTCAGCCCTTCTGCTCAACCAAGAGGATCCTGATGGCCAGATGagtgcagaggaggaggaggcgaggCGCATTGCAGAGATGGGAAAGCCCATCTTGGGGGAGCACAGCCGGCTGGAGGTGGTCATTGAGGAGTCTTATGAGTTCAAGAGCACCGTTGACAAGCTCATTAAGAAGACCAACTTGGCCCTTGTGATTGGCACTCACTCCTGGAGGGAGCAGTTCGTGGAAGCTGTGACTGTCAGCGCAGGGGATGGTGATGACGATGACGAGGAGGGGCGTGAAGAGCGTCTGCCATCCTGCTACGACTACGTCATGCACTTTCTGACGGTGTTCTGGAAGGTTCTGTTCGCCTTCGTTCCGCCCACCGAGTACTGGAATGGCTGGGCCTGCTTCTTCGTGTCCATCTCGGTCATCGGTATCTTGACTGCCATCATCGGGGACCTGGCCTCCCACTTTGGCTGCACTGTGGGCCTCAGGGACACTGTCACTGCTGTGGTGTTTGTGGCTCTTGGCACCTCTATTCCTGacACGTTTGCCAGCAAGGTGGCGGCCACGCAGGACCAGCACGCTGATGCGTCGGTGGGCAACGTGACTGGCAGCAATGCGGTCAACGTGTTCCTGGGCATCGGGGTGGCGTGGTCAGTGGCGGCCGTCTACTGGAAGGTGCAGGGCAAGGAGTTCCGCGTGGACCCAGGCTCCCTGGCCTTCTCCGTCACCCTCTTCACCAGCTTCGCCTTCATCTGCATGGGCGTGCTGCTGTTCCGCCGGCGGCCCTCTATCGGGGGGGAGCTGGGCGGGCCGCGGACAGCACGCATCAtcaccagcctcctcttcctGGGCCTCTGGTTCCTCTATGTCCTCTTCTCCAGCCTGGAGGCCTACTGCCACATAGAGGGCTTTTAGAGGACACATGAGAGCAGAGACAGGGCTACTAGTCAAAACACTGATATTCATTATAGTTATTATAATACACACATCTACAACAGGACAGGGCCCAGGCCAAAGGTTGGGACCTGGTCATTATCACTGGATCGCTAATACCTAAGGGATCTGTAAACATACCcgatatacacatacacacacacttacatacagacacatacacacacatactgaaacaTGAACTGTACATATAACTACATGCATGCACAAACAAATGCACACGTGGTCTCTCACcaagaccaacacacacatacagcactgTAACAAGGGCACCACACAGGTTACGTGTGGCCTGGATCCTGGATGACACCCAGTTAACATCAACCTCCTATTGCACACTCAAGGGTTATACACACTCACTGGACAAacgaggaagagaaggagagaaaagaaagtaTTGGTCAAGGAAGTGACAAAGGAAGTAAGACTGGAGAGATTTCAAAGGAAGCATGTTCAGAATGTAAACCAGCATGTCGTaaaagagggagagtgaaggagagaaagagacaggtgtGTAGAAACTAAGTGTTGCAGTGGCATTCTATTCATTCCGGCTGACTGCGTAACATGGTTTTGGGTCCAGACTGCTTTGATTGAAGCAGGGTAGAGTGCCGTGTGTTTTGCAGGGTGGGCCGTAGCTCCATCATCGTTGCAGGGAAGGCGAACCAGACTCGATCCACTCGACTCAATCCATGTCTGTGTGGCCTTAAAGCAGTATCAAGtatgacttgagtaaaagtaaaagtcacccagtaaaatactacttgttCTAAAAGTATCTgcttttaaatgtacttaatgTACAGTGGTGCAAAATGTACTCAATTGTCAGacttgagtaaaaataaaaaGTGAAAGTAAATGCTAGACATCAAATTccgtatattaagcaaaccagaccgcACAattttctttttatttatttttattttcggacagccaggggcacactccaaaactCCGACTTCGTTTAAAAAACgtagtatttgtgtttagtgagtccgccagatcagagcgAGTAGAGATGATAATgtgttatattgataggtgcgtgaattggaccatattaCTGTCctgcttttgggtgtcagggaaaatgtatgggagtaaaaagtaaaaaaaaaaaattggaatgTTGTGGAGtacaagtaaaagttgtcaaaaaatagtCATGTACAGATACCCCGAAAActagtagtacttcaaagtatttttacaaagttactttacaccactgcgtaGTAGTGGAATGGGTCCATCTTCAGTCGCTATGACAGAGCACCATGAAAATGGTTGATTAATGAGTAGGATGTTTACATTTAGCAATGGGagataaaacaacaacaacaacaaaactgaAAGCCCCAAGTTGCAGTTACTGTATGGTTTCCCATACAGAGGAAGTGGGTATTACGAATGACATTAAAACAAGCTCTCAATTCTGTGTTGGTGTAAATACAATAGGAGTGTATATGTATTTGTTAGAGGGGCTTCTCTACAGATATGGTGGGATGGGGTGGCCAATAATATATATAATGCATGGGGTTCAGAAACTAGTCACCACTGTCTTACTACACAGGAAAATGACTTTTGCAGGTAGCTTGTGTAAATTATGGCTCCGAGATGAGGTATCATCCTTTCTCATAACCACAATCCCCATCCATCGAACTTTAACATAGAGTCGATCCAGAGGGATTAAATATAAATGTGCCTCCTCATCTGTGGACTTCTGAATGAAGGGAAGACGGAGTTTCTGGAGGCACGACTCTGAATAACGAAAGTCTCACACCCAGCTCTTGAGGCTCTTACTGTTGTGTCTCACTGGACTTCAGATCATAGATCTGCATTCCACTCCAGCAGACAGTAGAGTCCTCCATCACCATCATGTTTGAGACGTTGTACATTTTGAATGACCTTTCGCAACCACAATGAGAGTGAAATGATGATTTAGCAATGCAGGCACGTTGATGGTGTAAATATTATTTTATGTTACTGTCCAAGGGTGAGTTACTATCCACTGAAGCACAGCACAAAGCGACACAATCTCCTAGAATGTAGAATGCTACGACAAGAGTGTATCGCTCGCTATCTGACGTATACTTTTCAAAAACAATCCTTTACCTGAATACAGGTATAAAGTCAAACCTTtacatctatatactgtatccctTTGGCTCCACGCTTGCTCAGTGGACAGTAACTATTCATCGTTCTTTGGTGGATGAAAAGGTAAAagcagagaggggtggagaggttgagggtagcaTTTGTTTGGTCCAAAAGTTATCCTATGTGAGGACATTGGCCACCTGTGTAGGACTTCAGGACCACCGAGTTCTGTACCGTgatgtttatattgttgttcattCAATCGAAATCTGTCAATATttgtgaaaaaaaacaaaaacacgtTGTTTGTTTGTGATACTTGTGATACTATAGCGGAGCACCTTTTTAGGTATGGAGGGCTTGTAAACCCTCTGCGGTGGAATACTGGGTAGAGATGCATGACATGACAGAATAATGGTGACAGCACAGCACCGGCATGGACAAAAAAATTATAATGCATGGGTGGTGACAAGAGAATAGTGTTTGTGTCTTTTTATGTGAGAAAGCAGAAGGTCCAGGCTGCAGCCAGACCTGTGAAGAGCATGCAGACTGCCTCTGCTCCTCACCTGTTTACAGTAAAGGCTGCCCTGAGATCAGCTCAACCCAACCCCAGCTAATTGGCCCCATATACAGCAACACTGGCCCACCATCAGCACTTAAGACCATGGCGTATAAATGATCTTATTTTGGAGTGAGGCTTACAGTACATCAATTTGTCCAACAGTTTTGGTTCAAATGCTCCTATTCTTCTGGGGTTTTTTTAACCTTTTGAAATCCAAACCTCCCCGTTTGCTTGACAGATTACATTTCAAACGGTGCGTTCTCATCAGCTACAGACTGTTATTCAGTAACTACTGATCGTCGCTACTGTAATTCTGCATCATACCCATTTAATGCCTTAAAGTCTAGTACTTACTATTTAGTCAAATTTGACTTGTCTTGTGTGTGCTTTGAGTGGGCATCAGAAACCTAATTGATTAGTGTGCAATATGTGGAACCAGTCAGCAATCTCTACTACTGAGTTAAGAAGAGTAGCAAGAGCTAATATGACTACATACAAACTGAAATGACATCTTCTTGAAAGATCAACTTAGCGATACTGTATTTACTCTGGATCTGACTCTACCATATAATATATTGTTACCCCTGCCCCAATCTCAATGAGATGAAAGTGCAATTAATAAGATAgtgggagatggggaggggtaGTGAACTGTTACAAGACTGTCCATGGTCCTTACATGTGGTTCAATCACCTGACTTACTGAGTCGCTAAGAAAACATGTTGAATAACAGAAGAGAACAAGGCTGACACAAAATGGAGGTGGGTTTATCTCAGTATTGCCAGGTGTTCTGAGGTGGATATGGAGAAAATAGGACACCGCAGTGAGACTCTTGAGTTAATATGCTGCACAATACTAGAGACGGATGTTATATCGTATGGGAGTTTTCCCCACTTATTTTAGAGTTCAGGATACTTGGAACTCTAGTTGAACTGTAGAGTGGTCAATCAGTACAACCAGTGAGTGATTAACATTTAAATATTACAATAGCAAACAATGGATTAAAAAGGTAATGACATTTTGGAAGTTAAGTGAGTAAAACAAATTGACCCCCTCAAAACTATAGATTTATTGATTCAAATAGTAAAGGATCTCTTGAGAATAGTCATGTATAAATATGCCCATTGTTGCTTGTATAACATATATAATATCAACAAAGATTTCAGTTACCTTGGCCCTCAGTGTTCCCCCAGTCTTtgtcaatttttttaaataaacgtCTCTTCAGATTATGTTGATAATGCTGGAAGCACCATAGATGTAGACCCAACGGTCTAGGAGGGTAATAAAGAGACATTTTGATACTTCTCTAATTGTCCAATTTGAAGACAAATTTCCCCATGAACTAGTCATTTGATGTAGCACAAACTACATGTACATTTCTGTTGcccagattatttaatttatttatatttattaagaATATTTTATTGTTCAACGGCTCCTTGAAGCAAACCATTTGAACCGTTCCAATGCTTCAAAGAGAGTGGGAGCAATGTGCAATATAAAGCTGACTCTTCTTTGCTTTCATCTTAATGAGCAGTCAACTGGGCTCACTCGGTGGGGAGTGAAACACTTATTTTCTCCAGTGTTTGTTGCGCCCTCGGCCAACCGACATACAGATTTATTTCATTCACTTGAGATTAGCATGTTTACATACAAATTTGTAATGGACATTCCAATGAACCTTGTCAGTTTGTTCAGGGTTGCTATACATAGGATGACATTTTACAGGGCCTTTACTGTGGTCATTGGGTTGGTTATGACATACTTTTTCCTGAATTGAACTGTCTACAATGTTCAGTGTTTCGATGACTTCTATTTACCTATCTGGCCTTTGCCATTGCTGTAGATGAGATATCACTCCAAGATGTTTTATGTGCTGTAAATGCCATCCTATGTGCAAATGCATGAACATTGTGTGTTAGCATGGTCTGTTAAGGACATGTAGGTTTACATTTGGATCGGGTTATCCCAAAACAGTTTTTGGCCTGTGTGGCTGCTTGCGTGGTCTGCTCACGCTTGCAACAAACTGAGCAATGTCGACTTGGTCGAGCAGCAGGTGAATTGTCATTCTTTGATTACGTGTTAACAGTCTACTTACTTATTCACCACCTATAAAAGCTGTGAAAAGAAAGCGACTTTTCCCGTCTATGTCTGAATGTCTCTGATCATTTGGTTGTCAGTTTGTTGGAGTTTGatatttctgtgtctgtgttcgtgCCCCTCAACTTTCTGTATTGGGGTGAACCACCCCAGGTCTTGCTCTTCAATGTGTCCTTGGTGCAGTTTTATCTGTGAACCTTTCTCTCTGCCTGACATTTGTATGGAATAGTGACTGACTTAAAAGAAGATATGTGATATTTACATTTATTCAATACTGTAATAAATTATTTGAAAATTATATTACTTTTTTTTATGAAAGGATAAACAAAGGAAAAGAACAATGAAACTTGTTTTGGAGAACCAATGGCATGAGGTGTAATGTGTTCTGAAAAAACAACTATGTAATCAACTCAAGTTAACCTTATTGAATatagtttatttattttcaaCG

Function

NR:

description
PREDICTED: sodium/calcium exchanger 2-like

GO: NA

KEGG:

id description
K05849 SLC8A, NCX; solute carrier family 8 (sodium/calcium exchanger)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961149.1 True 8449 mRNA 0.47 13 10160894 10263430

Neighbor

gene id symbol gene type direction distance location
LOC110503706 LOC105026808 coding downstream 1752 10152290 ~ 10159142 (-)
LOC110503705 hnrnpl coding downstream 7800 10143028 ~ 10153094 (-)
LOC110503316 prss16 coding downstream 20900 10129892 ~ 10139994 (-)
LOC110503704 LOC106612609 coding downstream 46646 10104566 ~ 10114248 (-)
LOC110503698 LOC107388308 coding downstream 148490 10009361 ~ 10012404 (-)
LOC118944110 NA coding upstream 23678 10287108 ~ 10301655 (-)
LOC110503707 LOC106612603 coding upstream 39612 10303042 ~ 10351767 (-)
zgc:85932 LOC106612602 coding upstream 89170 10352600 ~ 10363236 (-)
if3c LOC106612601 coding upstream 103609 10367039 ~ 10370494 (-)
zgc:152863 LOC106612597 coding upstream 167849 10431279 ~ 10437484 (-)
G1901162 NA non-coding downstream 31488 10128930 ~ 10129406 (-)
G1901147 LOC106612610 non-coding downstream 60328 10096286 ~ 10100566 (-)
G1901146 NA non-coding downstream 67997 10092560 ~ 10092897 (-)
G1901251 NA non-coding upstream 12411 10275841 ~ 10276160 (-)
G1901258 NA non-coding upstream 19758 10283188 ~ 10283398 (-)
G1901291 NA non-coding upstream 102910 10366340 ~ 10366897 (-)
G1901072 LOC107388308 other downstream 148540 10005372 ~ 10012354 (-)
LOC110503680 LOC106612628 other downstream 586745 9570867 ~ 9579939 (-)
G1899875 NA other downstream 2112920 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3700829 6371958 ~ 6472758 (-)
LOC118944082 NA other downstream 3929086 6181377 ~ 6231808 (-)
G1901302 LOC106612600 other upstream 135612 10399042 ~ 10399857 (-)
G1901405 NA other upstream 353494 10616924 ~ 10617481 (-)
G1901516 NA other upstream 590401 10853831 ~ 10856437 (-)
LOC110503734 rnf7 other upstream 652124 10915471 ~ 10918092 (-)
G1901922 LOC100380637 other upstream 927245 11190675 ~ 11192759 (-)

Expression


Co-expression Network