if3c (LOC106612601)


Basic Information

Item Value
gene id if3c
gene name LOC106612601
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10367039 ~ 10370494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160658.1
ACAGCCCTTTCCGTTCCAAGACATTTACGCTCCACTCACTCGCTTTTCCACTTCTCGGTCCACGTGCGGATTTTCTCAAATTTAGCACCAAAAAGACCGCAATACGAGTTTGGATTAAATGGCGTCTTCATTCGAGCAGATGAGAGCCAACGTGGGAAAGCTCTTACGAGGAATTGATAGATACAACCCAGAGAACCTTGCAACATTGGAACGCTACGTGGAAACACAAGTTAAAGAGAATGCATACGACCTAGAGGCCAATTTGGCTATCCTCAAATTGTACCAGTTCAACCCTGCCTACTTCCAGGTCACAGTGACGTCGCAAATTCTGCTCAAGGCCCTGACCAACCTACCACACACAGACTTTACTCTGTGCAAGTGCATGATTGACCAGACACACCAGCAGGAGGAGCGCCCCATAAGGCAGATCCTGTACCTGGGGAACCTCCTGGAGACCTGCCATTTCCAGTCCTTCTGGTCCAGCCTGGAGGAGAACAGGGAATTCATTGATGGCATCACAGGCTTTGAGGACTCAGTGCGCAAGTTTATCTGCCATGTGGTTGGAATCACATACCAGAACATTGAGCATCGACTTCTAGCTGAGATGCTGGGTGACCCCCTTGACACACAGGTGAAGGTGTGGATGAGCAAGTACGGGTGGACGGAGAATGAGGAAGGGCAGatcttcatctttaaccaggagGAGAGTGTCAAGCCCAAGAACATTGTGGAGAAGATTGACTTTGAGAGTGTATCCAGCATCATGGCCACATCTCAGTGATACCCAGACGCATCTGCACACTCAATGCACAATAAAAAAATCAGCCAGACAGCAGTACATATTCCTCAAACCAACCTTTTACAATAAATGTTAATTATCCATTC

Function

NR:

description
PREDICTED: eukaryotic translation initiation factor 3 subunit K isoform X1

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0043022 ribosome binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15028 EIF3K; translation initiation factor 3 subunit K

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160658.1 True 885 mRNA 0.48 8 10367039 10370494

Neighbor

gene id symbol gene type direction distance location
zgc:85932 LOC106612602 coding downstream 3803 10352600 ~ 10363236 (-)
LOC110503707 LOC106612603 coding downstream 15272 10303042 ~ 10351767 (-)
LOC118944110 NA coding downstream 65384 10287108 ~ 10301655 (-)
LOC110503317 LOC106612604 coding downstream 103609 10160894 ~ 10263430 (-)
LOC110503706 LOC105026808 coding downstream 207897 10152290 ~ 10159142 (-)
zgc:152863 LOC106612597 coding upstream 60785 10431279 ~ 10437484 (-)
LOC110503714 LOC106612596 coding upstream 68774 10438594 ~ 10466799 (-)
LOC110503715 LOC106612595 coding upstream 107461 10477955 ~ 10495064 (-)
LOC110503717 LOC106612594 coding upstream 152514 10523008 ~ 10545646 (-)
LOC110503721 LOC106612590 coding upstream 226081 10596575 ~ 10605378 (-)
G1901291 NA non-coding downstream 142 10366340 ~ 10366897 (-)
G1901258 NA non-coding downstream 83641 10283188 ~ 10283398 (-)
G1901251 NA non-coding downstream 90879 10275841 ~ 10276160 (-)
G1901295 NA non-coding upstream 24284 10394778 ~ 10396902 (-)
G1901306 LOC106612598 non-coding upstream 40141 10410635 ~ 10415419 (-)
G1901314 NA non-coding upstream 59153 10429647 ~ 10430068 (-)
G1901337 NA non-coding upstream 118125 10488619 ~ 10563143 (-)
G1901206 NA other downstream 161091 10205220 ~ 10205948 (-)
G1901072 LOC107388308 other downstream 354685 10005372 ~ 10012354 (-)
LOC110503680 LOC106612628 other downstream 792890 9570867 ~ 9579939 (-)
G1899875 NA other downstream 2319065 8046779 ~ 8047974 (-)
LOC110503590 LOC106612705 other downstream 3906974 6371958 ~ 6472758 (-)
G1901302 LOC106612600 other upstream 28548 10399042 ~ 10399857 (-)
G1901405 NA other upstream 246430 10616924 ~ 10617481 (-)
G1901516 NA other upstream 483337 10853831 ~ 10856437 (-)
LOC110503734 rnf7 other upstream 545060 10915471 ~ 10918092 (-)
G1901922 LOC100380637 other upstream 820181 11190675 ~ 11192759 (-)

Expression


Co-expression Network