Item | Value |
---|---|
gene id | LOC110503712 |
gene name | LOC106612598 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048588.1 |
NCBI id | CM023242.2 |
chromosome length | 45930806 |
location | 10410751 ~ 10427770 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
unnamed protein product |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0007165 | signal transduction | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0003677 | DNA binding | molecular_function |
GO:0004871 | obsolete signal transducer activity | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
GO:0046983 | protein dimerization activity | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036961288.1 | False | 3955 | mRNA | 0.48 | 15 | 10410751 | 10427770 |
XM_036961289.1 | False | 3952 | mRNA | 0.48 | 15 | 10410751 | 10427770 |
XM_036961290.1 | False | 3941 | mRNA | 0.48 | 15 | 10414858 | 10427770 |
XM_036961291.1 | True | 3938 | mRNA | 0.48 | 15 | 10414858 | 10427770 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110503711 | LOC106580858 | coding | upstream | 8629 | 10395966 ~ 10402123 (+) |
LOC110503709 | LOC106612599 | coding | upstream | 14903 | 10373133 ~ 10395848 (+) |
LOC118944011 | NA | coding | upstream | 182043 | 10205598 ~ 10228708 (+) |
LOC118944010 | NA | coding | upstream | 249820 | 10158220 ~ 10160931 (+) |
LOC110503702 | LOC106612610 | coding | upstream | 313073 | 10079483 ~ 10097678 (+) |
LOC110503716 | LOC106580865 | coding | downstream | 115811 | 10543581 ~ 10560319 (+) |
LOC110503719 | LOC106612592 | coding | downstream | 143601 | 10571371 ~ 10579935 (+) |
LOC110503720 | ercc2 | coding | downstream | 154620 | 10582390 ~ 10594857 (+) |
LOC110503723 | LOC106612591 | coding | downstream | 205301 | 10633071 ~ 10636790 (+) |
LOC110503725 | LOC106612733 | coding | downstream | 278437 | 10706207 ~ 10709800 (+) |
G1898835 | NA | non-coding | upstream | 31544 | 10378871 ~ 10379207 (+) |
G1898828 | NA | non-coding | upstream | 43211 | 10367030 ~ 10367540 (+) |
G1898797 | NA | non-coding | upstream | 110660 | 10299771 ~ 10300091 (+) |
G1898791 | NA | non-coding | upstream | 128567 | 10281748 ~ 10282184 (+) |
G1898844 | NA | non-coding | downstream | 1124 | 10428894 ~ 10429320 (+) |
G1898846 | NA | non-coding | downstream | 1760 | 10429530 ~ 10430070 (+) |
G1898852 | LOC106580861 | non-coding | downstream | 18545 | 10446315 ~ 10446727 (+) |
G1898853 | NA | non-coding | downstream | 19813 | 10447583 ~ 10447799 (+) |
G1898857 | NA | non-coding | downstream | 24251 | 10452021 ~ 10452376 (+) |
G1898772 | NA | other | upstream | 106333 | 10303182 ~ 10304418 (+) |
G1898545 | LOC106612623 | other | upstream | 561412 | 9848472 ~ 9849339 (+) |
G1898441 | NA | other | upstream | 821060 | 9588040 ~ 9589691 (+) |
G1898293 | LOC106612633 | other | upstream | 885205 | 9519932 ~ 9525546 (+) |
G1898315 | cep164 | other | upstream | 966694 | 9443294 ~ 9444057 (+) |
G1898883 | NA | other | downstream | 60083 | 10487853 ~ 10488334 (+) |
G1898930 | NA | other | downstream | 156345 | 10584115 ~ 10584449 (+) |
LOC118944016 | LOC106931471 | other | downstream | 303226 | 10730732 ~ 10758090 (+) |
G1901545 | NA | other | downstream | 443888 | 10871658 ~ 10872906 (+) |