LOC110503726 (LOC106612578)


Basic Information

Item Value
gene id LOC110503726
gene name LOC106612578
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10726288 ~ 10730411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582212.2
TTCTAGAAGTACCAAGGCTGCCATTTTTGTCTGTTGAGACGTGCAAAGGGGCCATCAATCAACTTTTGATTCAACTAGCTATCTTACTGGAACTAAAGAAGTCGAACAAAATTGTTAATTTTAGTATTAGATTGAGGACACAATTTCAATGGATTACGAGTCATTTCAATCACAAGCAACTTCAATTTTGGCTATTGTTGTTGAAGCGTCCGTGGCAGAAATGTGCAGAGTTGAGCATGAAGCGTCAATCATGGCATCATGTAGTGAAATATCTTGCACTGGAGATGATGGTGATCAAAATGTCAACACAGGGGCACGGCTTGTCTCCATCATGCACCTGTTGATGAAGGAAGCCATTCGAAAGTTATGTAGGTTATTCACAGAGTGTACTACAATTCTACAAAATGAAAATGAGACCCTGAAGAATAAACTGGAATTAATGGTGACACCACTGGAAAAGGGTTATGTTGTGTCTCCTGCCAGTGCAACGAAAGATGGGGAGCCTTCTGCATCATCAGAGGAAGACTGTGAGGAGGATGACTCAATCGACTGTTCCATCAAGGAGTGTGATATCTCAGGAATCAATGTGACATCAACCAGAGGAGAGGGTCCTGCAGATGTTGATAATGCACGCAGAGAGAGTTCAGGCACAGACAGTGACCCCCCTGCAGGAGACCGAGAGGAAGTAAAAACAGAGCCCACATCAAGAGACCCGGAAATTGGCGTTGAACACATCCATGATGCTCTCACTGATGGCCCACTAGTCAAAACAGAGGGCAATGGAACAAATGAAGAAGTTTCATCTGCTGATGTAACAGAAACTACAGAGCACAGCTGCCCCAGAACAAAGCAGATCTTCCCCAAAAGGAAGAAATCCTTTAACTGTGACCAGTGTGGGAGGCGTTTTCATCTGAGCAGCTTGCTGAAACAGCACAAGCGAGttcacacgggagagaagcctttctGCTGTGGCCAATGTGGAAAGAAGTTTATATACTTAACTTCTCTCAACAAGCATGTCTTGGGTCACTCAAAAGGGAGGACTTTTGGCTGCACAGTTTGCGGAAAGACGTTCAGTGAGGAGAGAGCACTAAAGTCCCACGAGTTTGTTCATTCAGAGGCAAAACCATTCAACTGTCTGACTTGTGGACAGGGTTTCACAACAAGAAACAGTCTTATGGTGCACCAGAGAATTCACACAGGTGAAAAACCATATAGCTGCACtatgtgtggaaagagttttgcaCAATCCAGTTACCTCACGACACATAAGAGAACACACTCCCTCGACAAGCCATTTAGGTGTGCTCAGTGTCAAAAGGGTTTCATGACTGAGCGGGCATTGAAATCTCACCAGGTAGTGCACACAGGACTGAAGGCATTTAAATGTGAGATATGCGGAAGCAGTTTTGGTCACGAGGTCAACCTTAAAAGACACAGTCTGATTCACACAGGGACTAAACCGTTCAGCTGTAAGGTGTGCGGAAAGCAGTTCAACCAATCCAGCACCCTCAAAGGACACATGCAGGTACACGAAGGATTGAAGCCCTTTATGTGTGACATTTGTGGAAGAACATTTGTATACAATTACGCTCTGAGAAACCACCAGCAGACACACATGGATGACGAAAAGAAGGACAAGCACAGGAAACCACAAAGTTGTGAGATATGTGGGAAGTGCTACAGCTCCATTGGGACGCTTAAAATACACCAGCTGCTTCACACAGGTGAGAAGCCGTTTGTTTGCTCCACATGTGGGAAAACCTTCACCCAGCGAGCTGCTTGTGTCATACATCAGAAggttcacactggagagaagtcTCACATGTGCAGCgtgtgtgggaagagcttcagttTGCCAAACAGTCTTCGACTACATGAACGAATTCACACTGGCGAGAAACCTTACACATGTGAAACTTGTGGGATGACCTTCCGTATCAGCGGTAACCTTAAAAGGCATATGCGTGTTCATACAGGAGAGAGGCCCTTTAGCTGTGAAGTATGTGGGAAAATGTTCAGCCAAGCTAATAATGTCAAAGCTCACATGCAGGTGCACAAAGCAGAAAAGCCATACTCATGTGACAATTGTGGAAAAAGCTTTGCCTATGTAAGAAATTTCAAGGAACACAAGTGTGTCAGTAGATAACCATTTGCAGCACTGTGAGGATTGTATCACAAAATGTGTAGTTTGGGGTGCCTACATGGTTGACAAGTGAGGATcaacttttattattattattattaagagaGTGGGCATTAAAAATGAAGTCTCTTAGTTTTAGGGTTGATGATGCTGTAGACTGATATCTGGGCATTTGTTGAGCAGGAAGATGACATGGTCTCAGTATTATAAGTTATTTATTTGTAGCAAAACTTATTTTGTTCATTTAGCACTTTTATCAAATTGCATAAGCTTTTTCTTTAATGGACAGATAGAAATGTACTGGGCGAGGGGTGGTCCAAAATAAGGGAGGGTtgtcaattacatttttttgctttggggagggttgtgtggGTTTTTTTATTGGGCaaaggggagggtagtgtgtttctttttttgggggggggggggttctccctGGTTTACATTCGCTCTTCTGCATGTATTTTCCCTATAGACAATGGCTTGTGGAAGAACATTTGATATTACACTAATAAACTTTTAAAATGTTTGTGAA
>XM_036961239.1
TGCGTGTGAAAGCAGATCAGCACCATCTGATGTTTATACTTGGGGGCGTGCTGTTTGATATAAACAATCTAATTTCTTTCCAAATGGCTTCAACATCTATAAACTTGACCTGAGTTTAATGGCACGGCTTGTCTCCATCATGCACCTGTTGATGAAGGAAGCCATTCGAAAGTTATGTAGGTTATTCACAGAGTGTACTACAATTCTACAAAATGAAAATGAGACCCTGAAGAATAAACTGGAATTAATGGTGACACCACTGGAAAAGGGTTATGTTGTGTCTCCTGCCAGTGCAACGAAAGATGGGGAGCCTTCTGCATCATCAGAGGAAGACTGTGAGGAGGATGACTCAATCGACTGTTCCATCAAGGAGTGTGATATCTCAGGAATCAATGTGACATCAACCAGAGGAGAGGGTCCTGCAGATGTTGATAATGCACGCAGAGAGAGTTCAGGCACAGACAGTGACCCCCCTGCAGGAGACCGAGAGGAAGTAAAAACAGAGCCCACATCAAGAGACCCGGAAATTGGCGTTGAACACATCCATGATGCTCTCACTGATGGCCCACTAGTCAAAACAGAGGGCAATGGAACAAATGAAGAAGTTTCATCTGCTGATGTAACAGAAACTACAGAGCACAGCTGCCCCAGAACAAAGCAGATCTTCCCCAAAAGGAAGAAATCCTTTAACTGTGACCAGTGTGGGAGGCGTTTTCATCTGAGCAGCTTGCTGAAACAGCACAAGCGAGttcacacgggagagaagcctttctGCTGTGGCCAATGTGGAAAGAAGTTTATATACTTAACTTCTCTCAACAAGCATGTCTTGGGTCACTCAAAAGGGAGGACTTTTGGCTGCACAGTTTGCGGAAAGACGTTCAGTGAGGAGAGAGCACTAAAGTCCCACGAGTTTGTTCATTCAGAGGCAAAACCATTCAACTGTCTGACTTGTGGACAGGGTTTCACAACAAGAAACAGTCTTATGGTGCACCAGAGAATTCACACAGGTGAAAAACCATATAGCTGCACtatgtgtggaaagagttttgcaCAATCCAGTTACCTCACGACACATAAGAGAACACACTCCCTCGACAAGCCATTTAGGTGTGCTCAGTGTCAAAAGGGTTTCATGACTGAGCGGGCATTGAAATCTCACCAGGTAGTGCACACAGGACTGAAGGCATTTAAATGTGAGATATGCGGAAGCAGTTTTGGTCACGAGGTCAACCTTAAAAGACACAGTCTGATTCACACAGGGACTAAACCGTTCAGCTGTAAGGTGTGCGGAAAGCAGTTCAACCAATCCAGCACCCTCAAAGGACACATGCAGGTACACGAAGGATTGAAGCCCTTTATGTGTGACATTTGTGGAAGAACATTTGTATACAATTACGCTCTGAGAAACCACCAGCAGACACACATGGATGACGAAAAGAAGGACAAGCACAGGAAACCACAAAGTTGTGAGATATGTGGGAAGTGCTACAGCTCCATTGGGACGCTTAAAATACACCAGCTGCTTCACACAGGTGAGAAGCCGTTTGTTTGCTCCACATGTGGGAAAACCTTCACCCAGCGAGCTGCTTGTGTCATACATCAGAAggttcacactggagagaagtcTCACATGTGCAGCgtgtgtgggaagagcttcagttTGCCAAACAGTCTTCGACTACATGAACGAATTCACACTGGCGAGAAACCTTACACATGTGAAACTTGTGGGATGACCTTCCGTATCAGCGGTAACCTTAAAAGGCATATGCGTGTTCATACAGGAGAGAGGCCCTTTAGCTGTGAAGTATGTGGGAAAATGTTCAGCCAAGCTAATAATGTCAAAGCTCACATGCAGGTGCACAAAGCAGAAAAGCCATACTCATGTGACAATTGTGGAAAAAGCTTTGCCTATGTAAGAAATTTCAAGGAACACAAGTGTGTCAGTAGATAACCATTTGCAGCACTGTGAGGATTGTATCACAAAATGTGTAGTTTGGGGTGCCTACATGGTTGACAAGTGAGGATcaacttttattattattattattaagagaGTGGGCATTAAAAATGAAGTCTCTTAGTTTTAGGGTTGATGATGCTGTAGACTGATATCTGGGCATTTGTTGAGCAGGAAGATGACATGGTCTCAGTATTATAAGTTATTTATTTGTAGCAAAACTTATTTTGTTCATTTAGCACTTTTATCAAATTGCATAAGCTTTTTCTTTAATGGACAGATAGAAATGTACTGGGCGAGGGGTGGTCCAAAATAAGGGAGGGTtgtcaattacatttttttgctttggggagggttgtgtggGTTTTTTTATTGGGCaaaggggagggtagtgtgtttctttttttgggggggggggggttctccctGGTTTACATTCGCTCTTCTGCATGTATTTTCCCTATAGACAATGGCTTGTGGAAGAACATTTGATATTACACTAATAAACTTTTAAAATGTTTGTGAA

Function

NR:

description
gastrula zinc finger protein XlCGF26.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582212.2 False 2681 mRNA 0.43 5 10726288 10729884
XM_036961239.1 True 2489 mRNA 0.44 5 10726288 10730411

Neighbor

gene id symbol gene type direction distance location
LOC110503727 LOC106612579 coding downstream 6177 10711334 ~ 10720111 (-)
LOC110503722 LOC106612588 coding downstream 24764 10636698 ~ 10701524 (-)
LOC110503721 LOC106612590 coding downstream 120910 10596575 ~ 10605378 (-)
LOC110503717 LOC106612594 coding downstream 180642 10523008 ~ 10545646 (-)
LOC110503715 LOC106612595 coding downstream 231224 10477955 ~ 10495064 (-)
LOC110503728 LOC106612577 coding upstream 35481 10765892 ~ 10809404 (-)
LOC110503731 LOC106612580 coding upstream 143369 10873780 ~ 10877199 (-)
LOC110503733 LOC106612581 coding upstream 174918 10905329 ~ 10912872 (-)
LOC110503734 rnf7 coding upstream 185060 10915471 ~ 10918092 (-)
shbgb shbgb coding upstream 241680 10972091 ~ 10982118 (-)
G1901448 NA non-coding downstream 5063 10720899 ~ 10721225 (-)
G1901392 NA non-coding downstream 133319 10592086 ~ 10592969 (-)
G1901388 NA non-coding downstream 138717 10587103 ~ 10587571 (-)
G1901170 NA non-coding downstream 141759 10584164 ~ 10584529 (-)
G1901380 NA non-coding downstream 161237 10564823 ~ 10565051 (-)
G1901492 NA non-coding upstream 81005 10811416 ~ 10812071 (-)
G1901501 NA non-coding upstream 90602 10821013 ~ 10821392 (-)
G1901532 LOC106612575 non-coding upstream 122187 10852598 ~ 10853532 (-)
G1901752 NA non-coding upstream 140566 10870977 ~ 10871522 (-)
G1901405 NA other downstream 108807 10616924 ~ 10617481 (-)
G1901302 LOC106612600 other downstream 326431 10399042 ~ 10399857 (-)
G1901206 NA other downstream 520340 10205220 ~ 10205948 (-)
G1901072 LOC107388308 other downstream 713934 10005372 ~ 10012354 (-)
LOC110503680 LOC106612628 other downstream 1152139 9570867 ~ 9579939 (-)
G1901516 NA other upstream 123420 10853831 ~ 10856437 (-)
G1901922 LOC100380637 other upstream 460264 11190675 ~ 11192759 (-)
LOC110503748 LOC106612568 other upstream 722993 11453367 ~ 11478299 (-)
G1902875 NA other upstream 1237431 11967842 ~ 12052648 (-)

Expression


Co-expression Network