LOC118944016 (LOC106931471)


Basic Information

Item Value
gene id LOC118944016
gene name LOC106931471
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10730732 ~ 10758090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961241.1
ATTTCAACACAATTTCTGAATGATATAGCTTTCCTCAGCAAATTTTTTAATAcaggtctgtatctgtctctgtcctaaAACTGAAAAGAACTGCAGGTAGCCAGCCTAACATTAGGAACAAGAGTATTGGTTGCTCCTGTCTATTCATAACCAATAAGCGCAGTGTTGCTATGCATTATCGCTGTATTGGTTGGCGGACACGGCTGTCAATTTGTCTCCAGACGAAGTACAGTGTGGTTCTGTGCAATTACATCAAACTCGGTCTGGGCACCGCGCGCTTGGAAGCATTGCGTCTGCACGACTTTCCAGGCTGGAGAGGAAATTTACCTCGAAAGGAATGCGAAGAAGGTTTTAGGTTTGGCATTGCTACGAGGAAAACGTGGAGGTGTGACTTTTTAAGTGATCAACATATATTTTTCTTCTATTCAAAGGTGTGTGCCTCCCACCCCGCCCCCCACCACGGCCCTCACCTGTGTATTGCGGTGCTTCCCCTGCGAGCCTAGCTGGGCCGGCAGCCCTTTCCTGCACCGCCCCCCCACCCCGCCCCACCCGATGGTCAGGATGACACGCTCCAAGACCTTCCAGGCCTACCTGCCCAGCTGCCACCGAACCTACAGCTGCATCCACTGCAGAGCGCACCTGGCCAACCACGACGAGCTCATCTCCAAGTCTTTCCAGGGGAGCCAAGGCAGAGCTTATCTGTTCAACTCAGTggtGAACGTGGGGTGTGGGCCGGCGGAAGAGAGAGTGTTGCTCACGGGGCTCCATGCTGTGGCAGATATCTACTGTGAGAACTGCAAGACAACTCTGGGTTGGAAATATGAGCATGCCTTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATCATCGAGCTGGCCCACATGATCAAGGACAACGGCTGGGACTGAAAGACGAAGCGTCATCCGTGACTCGGTTTGGGGTTGAATGGGGGTGGATGGGAGGGAAGGAGCCGAGTGTGGGTGAGTGTGCGACTTTGATTTACCATGgacctctgtcctcccctcctgATGACACACCAGCAGCCTCCAGGGTGGAGGTagtaggggagtgtgtgtgtgaggctgtaGTAGCAGCCTGGCCTGCCCCTctgggctctgtgtgtgtctggactgGAGGAGGATGTCATTGGGGATGGATGGACACCACCAGACACACACGCAATGGcaagcatacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagccatgcatgtCCCAGACCAACATCCAAGCCTGATGGGTAGCTCTTTAGATAGAGAGCCAGGCCAAGGCCAGTAATGTTATGTTACTATCTATGTTAGGGCGGGTTGACCTGCAGTGTgaggagagaccaggccctggcAGGGTCAGTAGCCTTGGGTTAAACAGCTGATGGGAGCTCTCGTCTGTATGTGAATGAGATGGCCTAAGATGATTATCCCCAAATCCAGCTGATCTGATCCACCCAAGGCCGTGCCAGCTGGGACAGTGATGAGGCCTGGTGTTAAGGTTTGGCACTGAGGACTGTGGGGGCTGGGCGGGGGAAGGGTTGAGGGGAGGCGGGTCAGGGAGAGGGCAGGTCCTGATTCTGGATTCTAGTCCACCCTGGTTGTGGGGTTGTAGGTACAGCTGGTTGCACAGCCGTGTGATCCACTCCAGGTCTTACCGGCAGCAGTTTTTGTTGTGCGAGTCAGGATGATAGGGAGTGTGAAAGGATTCAAGGATACGTATAAACTCTGAGAAGAATCTGATCAGTCAGTGCTTTGGCTCTCTCCATCATCCGTAGATGCCTGAAATCATGTCTTGCGATGTTTGGATACTTCATGTGTTGTGTCTGATGTAAGTTAAGATACATCTACCATCACCACTTTGGATTCAATTTGAACTATAGAGTTAAACATCTTTGACTTTTGAAACTCTGATTTGAACAGGCTTGGAGATTTGGTTCTagtgttttggcctggtatggtaactgaaTGCAGTTGGGATGTGGAGGCCTTTAGGAGATGCTCTTATGAAGTTCTGAAGCTTTCTTTCAGTCTTGGATGATCATAGCAGTTCATAGATTGTTACACACACTCTAACTTACAACCTGGCCCTCACATAAAACACTGAACAGAAAagccgtacagtagacctgtggaTTTTTCTAAACAGAAGCCAACTAAGCAACACAACTAATCAAACCAATCTCCCTGGTATCCACGGCAACTGACTGGCAGTCCAGAATTCCAATCAGAGGCTGTAGAAGTCCCTAGCACAACCAAAGAACACACCCATCTACAATAAATTGACCAAACacaagatacattttttttgcttGGGTCAAAGTGTTGCACAACATGGGGTTGAGAATTGTTGTTGAAAGCCAAGGTTATGGATAGCCTTTCTGTGATATAATGCATTATGATTTTTGTAAATGACAGATcttaatatatacatatattataaTTTATGTCAATCTCTGTGTTACTAAATGTAAATAGTAATATGTGATGTCTCTTATCTATGATCGTCATGATTATGAATATGATTTGGATTCTTGCCATGCTTTCTCTCTGGTATATCCCTTGTCGGTTGAACAATATTTACTACTTTTTTACTCTTTTGAAAATGTTTCAATTTTAGTGTCTTTTGTAAAGGAGGAGATAGGAGTGACAATATCATTGGAACTTGGTCAATTAAAGCATCACCTTGGTACTTGTA
>TU2172082
TGGGCACCGCGCGCTTGGAAGCATTGCGTCTGCACGACTTTCCAGGCTGGAGAGGAAATTTACCTCGAAAGGAATGCGAAGAAGGTTTTAGGTTTGGCATTGCTACGAGGAAAACGTGGAGGTGTGACTTTTTAAGTGATCAACATATATTTTTCTTCTATTCAAAGGTGTGTGCCTCCCACCCCGCCCCCCACCACGGCCCTCACCTGTGTATTGCGGTGCTTCCCCTGCGAGCCTAGCTGGGCCGGCAGCCCTTTCCTGCACCGCCCCCCCACCCCGCCCCACCCGATGGTCAGGATGACACGCTCCAAGACCTTCCAGGCCTACCTGCCCAGCTGCCACCGAACCTACAGCTGCATCCACTGCAGAGCGCACCTGGCCAACCACGACGAGCTCATCTCCAAGTCTTTCCAGGGGAGCCAAGGCAGAGCTTATCTGTTCAACTCAGTggtGAACGTGGGGTGTGGGCCGGCGGAAGAGAGAGTGTTGCTCACGGGGCTCCATGCTGTGGCAGATATCTACTGTGAGAACTGCAAGACAACTCTGGGTTGGAAATATGAGCATGCCTTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATCATCGAGCTGGCCCACATGATCAAGGACAACGGCTGGGACTGAAAGACGAAGCGTCATCCGTGACTCGGTTTGGGGTTGAATGGGGGTGGATGGGAGGGAAGGAGCCGAGTGTGGGTGAGTGTGCGACTTTGATTTACCATGgacctctgtcctcccctcctgATGACACACCAGCAGCCTCCAGGGTGGAGGTagtaggggagtgtgtgtgtgaggctgtaGTAGCAGCCTGGCCTGCCCCTctgggctctgtgtgtgtctggactgGAGGAGGATGTCATTGGGGATGGATGGACACCACCAGACACACACGCAATGGcaagcatacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagccatgcatgtCCCAGACCAACATCCAAGCCTGATGGGTAGCTCTTTAGATAGAGAGCCAGGCCAAGGCCAGTAATGTTATGTTACTATCTATGTTAGGGCGGGTTGACCTGCAGTGTgaggagagaccaggccctggcAGGGTCAGTAGCCTTGGGTTAAACAGCTGATGGGAGCTCTCGTCTGTATGTGAATGAGATGGCCTAAGATGATTATCCCCAAATCCAGCTGATCTGATCCACCCAAGGCCGTGCCAGCTGGGACAGTGATGAGGCCTGGTGTTAAGGTTTGGCACTGAGGACTGTGGGGGCTGGGCGGGGGAAGGGTTGAGGGGAGGCGGGTCAGGGAGAGGGCAGGTCCTGATTCTGGATTCTAGTCCACCCTGGTTGTGGGGTTGTAGGTACAGCTGGTTGCACAGCCGTGTGATCCACTCCAGGTCTTACCGGCAGCAGTTTTTGTTGTGCGAGTCAGGATGATAGGGAGTGTGAAAGGATTCAAGGATACGTATAAACTCTGAGAAGAATCTGATCAGTCAGTGCTTTGGCTCTCTCCATCATCCGTAGATGCCTGAAATCATGTCTTGCGATGTTTGGATACTTCATGTGTTGTGTCTGATGTAAGTTAAGATACATCTACCATCACCACTTTGGATTCAATTTGAACTATAGAGTTAAACATCTTTGACTTTTGAAACTCTGATTTGAACAGGCTTGGAGATTTGGTTCTagtgttttggcctggtatggtaactgaaTGCAGTTGGGATGTGGAGGCCTTTAGGAGATGCTCTTATGAAGTTCTGAAGCTTTCTTTCAGTCTTGGATGATCATAGCAGTTCATAGATTGTTACACACACTCTAACTTACAACCTGGCCCTCACATAAAACACTGAACAGAAAagccgtacagtagacctgtggaTTTTTCTAAACAGAAGCCAACTAAGCAACACAACTAATCAAACCAATCTCCCTGGTATCCACGGCAACTGACTGGCAGTCCAGAATTCCAATCAGAGGCTGTAGAAGTCCCTAGCACAACCAAAGAACACACCCATCTACAATAAATTGACCAAAC

Function

NR:

description
protein yippee-like 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961241.1 False 2835 mRNA 0.48 5 10730732 10758090
TU2172082 True 2165 TUCP 0.52 5 10730996 10757684
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110503725 LOC106612733 coding upstream 20932 10706207 ~ 10709800 (+)
LOC110503723 LOC106612591 coding upstream 93942 10633071 ~ 10636790 (+)
LOC110503720 ercc2 coding upstream 135875 10582390 ~ 10594857 (+)
LOC110503719 LOC106612592 coding upstream 150797 10571371 ~ 10579935 (+)
LOC110503716 LOC106580865 coding upstream 170413 10543581 ~ 10560319 (+)
LOC110503730 bcl7b coding downstream 55123 10813213 ~ 10816275 (+)
LOC110503318 LOC106612575 coding downstream 69186 10827276 ~ 10856491 (+)
LOC110503736 fa70b coding downstream 173789 10931879 ~ 10971014 (+)
LOC110503739 NA coding downstream 268841 11026931 ~ 11029263 (+)
LOC118944017 NA coding downstream 282147 11040237 ~ 11044659 (+)
G1898954 NA non-coding upstream 113271 10616888 ~ 10617461 (+)
G1898927 NA non-coding upstream 163969 10566458 ~ 10566763 (+)
G1898925 NA non-coding upstream 165661 10564811 ~ 10565071 (+)
G1898924 NA non-coding upstream 166296 10564227 ~ 10564436 (+)
G1899035 NA non-coding downstream 7860 10765950 ~ 10768070 (+)
G1899036 NA non-coding downstream 54819 10812909 ~ 10813026 (+)
G1899063 NA non-coding downstream 59026 10817116 ~ 10817576 (+)
G1901497 NA non-coding downstream 63089 10821179 ~ 10821507 (+)
G1901498 NA non-coding downstream 63437 10821527 ~ 10822228 (+)
G1898930 NA other upstream 146283 10584115 ~ 10584449 (+)
G1898883 NA other upstream 242398 10487853 ~ 10488334 (+)
G1898772 NA other upstream 426314 10303182 ~ 10304418 (+)
G1898545 LOC106612623 other upstream 881393 9848472 ~ 9849339 (+)
G1901545 NA other downstream 113568 10871658 ~ 10872906 (+)
LOC110503322 LOC106612564 other downstream 818861 11494038 ~ 11583941 (+)
G1902710 NA other downstream 1554485 12312575 ~ 12313457 (+)
G1903192 NA other downstream 1780631 12538721 ~ 12544378 (+)

Expression

LOC118944016(LOC106931471) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC118944016(LOC106931471) Expression in each Bioproject

Bar chart with 20 bars.
LOC118944016(LOC106931471) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G7153 NA unknown CI01000000 null 11244457 ~ 11245633 (+)
grasscarp (Ctenopharyngodon idella) G23759 NA non-coding CI01000003 null 2125823 ~ 2126095 (-)
grasscarp (Ctenopharyngodon idella) G226536 NA unknown CI01000053 null 2217448 ~ 2237396 (-)
mexican tetra (Astyanax mexicanus) LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 misc NC_035897.1 CM008300.1 23876999 ~ 23907474 (+)