LOC110503733 (LOC106612581)


Basic Information

Item Value
gene id LOC110503733
gene name LOC106612581
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10905329 ~ 10912872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582218.2
ATGTGTGACATGGGGGGATTGGATAATCTGGTGGCGAACACGGCCTACCTTAAGGGGGGCGACGAaaaggagatgaggaagaggCGGCGCAGCCTGTCCCTGCCCAAGCCAGAACAGTGCGTGTCCATCCGCGCCGCAGTGGGGAAAGAATTTGAGATGCTCTGCGAGAGGCAGCCCATAGGGAAGAAGTTCTTCCGGCAGTTCCTCCTGGAGTCCAACCCGCAGTACGTGGCAGCTGCAGAGTTCCTGGACGAGTTAATCGACTGGGATCTGGCGGAAGGCGCTGGCAAAGATAAGGCGAGGACGAACATCATCAACAAGTTCTGCAAGGCTGACTCCAAGAGCTTCCTGTCCTACCTGACAGGAGAGGTAGCGGACAAGTGCAAGGCCGTGTCGGACAAGGATTTTGAAGAGGTGATGATGGGCAAGGTGAAGGATGCCACACGGGAGTACCTGAAGGAAAAGCCCTTCACAGAGTACCAGACCAGCCCTAACTTTGACAAGTTCCTGCAGTGGAAAGAGTACGAGAAACAGAAAATCACTGATAAGTATTTTCATGAGTTCAGGACCCTTGGAAAGGGAGGCTTTGGAGAGgTGTGTGCCGTGCAGGTGAAGAACTCAGGCCAGATGTACGCCTGCAAAAAGCTGTGCAAGAAGCGTCTGAAGCAGAAGAATGGTGAAGGCATGGCACTACTGGAGAAACAGATCCTGGAGAAGGTCAACAGCCTGTTCCTGGTGAACCTGTCCTATGCCTACGACACTAAGACCCACCTGTGTCTCGTCATGACCCTGATGAATGGCGGCGACCTCCGGTACCACATCTACAACATTGGCGAAAAAGGCCTAGAAATAGACCGCATCAATTACTACATTGCACAGGTCACCACAGGAATCCTCCACCTGCACTCCATGGATATAGCATACAGAGACATGAAGCCAGAGAACGTGCTACTGGATAGCTTCGGCCAATGTCGACTCTCGGATCTGGGGTTGGCCGTGGAGCTCCCTGGCGAAAAGACCATAAATCAAAAGGCTGGCACAAGTGGCTACATGGCCCCAGAGATCCTGAAGAAAGAGCCTTACCGGATGTCAGTGGACTGGTGGGCACTGGGCTGCAGTATCTACGAGATGGTAGCAGCTCGCCTGCCCTTCAAGGACTATAAGGAGAAGGTGCAGAAGGAGGAGGTGGCACGGCGCACCCTCGAGGATGAATGCAAGTACGAGCACAAGAACTTTGACGAGGGCACCAAGGCCATCATCGACCTCTTCCTCAAGAAGAAAATTGACGAGCGTCTGGGATGCAGGACCAAGAACGAAGACCCAAGGAAGCATGAGTGGTTCAAGAGCATTAACTTCCCTCGACTGGAGGCGGGGCTGATCGACCCACCCTGGGTTCCCAAGCCCAACGTGGTCTACGCCAAAGACACGGGGGACATCAAAGACTTCTCAGAGATCAAGGGCATTGTGTTTGACGACAAAGATGACAAATTCTTCAAGGAATTCAACACGGGGGCAGTGCCCATTGCTTGGCAACAGGAAATGATTGACAGCGGACTTTTTGACGAGCTGAACGACCCCAACAGGAAAGAGTCGGCCCCTGGATATGACGACGAGGAGAAGAAATCTAAATCCTGCACGCTTTTATAAAAGCTCCTCTATACTATAGTTAGGACTTTTGTAATTTTCAAAGCTATCTCATTAAGAACATTGTGACGATAATCATATCCACAAAAAAAGGTGTGGCAGTAAAATCCAGGGTGGCAGTAAAATCCAGGGTCAGGTCAAGGAACGTATTTCCACCATTTCACACCTTTTTTTGTGGATATGATTCTTCCTGCTCTCCTACATTGTAATGATCATGATAAACCACAGCACTTACGATGATATCAGCAATCGATAAGGAGCTATAGGTCATTTTGCCTGTATCATTGAGCAGAGTCAGTGTCTGTGGTATAATCAACAGCAAATAGCTAGACCAGAGCCAGAATGGGAACTGTGCTTTACAGGCACTGGCATAGTTGCAGTAGCAGGCTTCTACCACAAGGTGTCCTCAGATGTCTAGATATGTGGATATTCACAAAACCTTCTTCTCTGTATTGACCTGCATGTAACATCTTGCCTTTTTAAAATGCATATGGTAAGATCTCCTGTTCATTTTCTTGTGAGTTGTGGTTTTATTGGATTGCAATGCTTTGACTCTTAAAGCCTTAGAGAGCATTAACTCTCACTCCTTCACAAGTCTATCCCAATGACCAACAAACTCCCAAACCATATTTTaacaaatgtataaataaatataaaatggaTGTCACTGTGTTCAGTCTCATAAGCTATTTTTAATAGTATTATGTAGGTTTTATTTCAAGTGCACTATAACAATGTATATGCTAGCTTATTTTCACCCATTAGTTAcatttaaaggcccaatgcagatgtgtatatatcaatatcaaattatttctgggtaacagCTGTAATAGTATTACATTAAAATTGACAAAAATAGCATTTTAGCAAATTACTATTTCTCAAGTTGTctgggaggggtctgagtggggaggggaaaactgaaaattagctgtcattggcagaggtttggaactctctttgttattggtgaATTTtatcgcctggtgatgtcaccgggAAAGCCAAAACTCCTGCCTTTGCAAACCTGCTAATTAGGTCCTGTGTCGATTGTATTTTCAAcaagcaactatcaggaaataacactgatcaaattgtgttagtttcatcagctgttgtacaatatgacacaaaacacaggacaaacataattttgactgcactgggcctttaagaatGTGTGCACATCATAATGCACCTTACTAATGAAGTATGTTAATAGAATTGAGAAACCGAGATGATCATTGAGGATTTCAGTGTCTGTATGGACAGTTTATTATAGTCTGTGTAGGAGTTGAATGGATCTCAGAAGAATGTTAAATCAAAAGCTGGTCCTGTTTTGTGCTTGTGTCTTTGTTACGTTGAGCTTCTCGAAGTGACATTTGATTTGTAATTTTAAAATGTAAATctctatttctttttttttaagggATTGGGGATGCTTGTGGTATGTGAATGCTGAATGGAAAGGTGATATGTGCAATAGGAAATTGTAGAAAATCAAAGAAATAATGAAggatttttatatatttatttgaaaatgtttttttatttcccTGTATAATCTGTGTAAAATCAGTTTAAATTCAACCTC

Function

NR:

description
rhodopsin kinase 1-like

GO: NA

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582218.2 True 3241 mRNA 0.44 4 10905329 10912872

Neighbor

gene id symbol gene type direction distance location
LOC110503731 LOC106612580 coding downstream 28130 10873780 ~ 10877199 (-)
LOC110503728 LOC106612577 coding downstream 95925 10765892 ~ 10809404 (-)
LOC110503726 LOC106612578 coding downstream 174918 10726288 ~ 10730411 (-)
LOC110503727 LOC106612579 coding downstream 185218 10711334 ~ 10720111 (-)
LOC110503722 LOC106612588 coding downstream 203805 10636698 ~ 10701524 (-)
LOC110503734 rnf7 coding upstream 2599 10915471 ~ 10918092 (-)
shbgb shbgb coding upstream 59219 10972091 ~ 10982118 (-)
LOC110503738 rasa2 coding upstream 73538 10983924 ~ 11027881 (-)
LOC110503737 LOC106612576 coding upstream 121147 11034019 ~ 11045548 (-)
fbxo36a LOC106612583 coding upstream 133751 11046623 ~ 11047857 (-)
G1901764 NA non-coding downstream 12997 10891993 ~ 10892332 (-)
G1901763 NA non-coding downstream 13427 10891648 ~ 10891902 (-)
G1901752 NA non-coding downstream 33807 10870977 ~ 10871522 (-)
G1901532 LOC106612575 non-coding downstream 51797 10852598 ~ 10853532 (-)
G1901811 NA non-coding upstream 58271 10971143 ~ 10971351 (-)
G1901827 NA non-coding upstream 106148 11019020 ~ 11019391 (-)
G1901836 NA non-coding upstream 116654 11029526 ~ 11029754 (-)
G1901838 NA non-coding upstream 118573 11031445 ~ 11032378 (-)
G1901516 NA other downstream 48892 10853831 ~ 10856437 (-)
G1901405 NA other downstream 287848 10616924 ~ 10617481 (-)
G1901302 LOC106612600 other downstream 505472 10399042 ~ 10399857 (-)
G1901206 NA other downstream 699381 10205220 ~ 10205948 (-)
G1901072 LOC107388308 other downstream 892975 10005372 ~ 10012354 (-)
G1901922 LOC100380637 other upstream 277803 11190675 ~ 11192759 (-)
LOC110503748 LOC106612568 other upstream 540532 11453367 ~ 11478299 (-)
G1902875 NA other upstream 1054970 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other upstream 1066939 11941794 ~ 11982431 (-)

Expression


Co-expression Network