LOC110503734 (rnf7)


Basic Information

Item Value
gene id LOC110503734
gene name rnf7
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 10915471 ~ 10918092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582219.2
TTGCAGAGATGGAAGACGGTGAAGAGCCGGGTTTAGTTCACTCTCACAGCTCTACTTCTGGGTCAAAATCGAGCAGTGACAAGATGTTTTCTCTCAAGAAATGGAATGCTGTTGCAATGTGGAGCTGGGATGTGGAGTGCGATACATGCGCCATCTGTAGGGTCCAAGTTATGGATGCATGCTTGCGGTGTCAGGCTGAAAATAAACAAGAGGACTGTGTCGTGGTATGGGGAGAGTGCAACCACTCTTTCCACAATTGCTGCATGTCTCTCTGGGTGAAGCAGAACAATCGCTGCCCACTGTGCCAGCAGGACTGGGTCGTGCAAAGAATCGGCAAATGAAATGCCTCTAACTTCCCCATCCTTCCACTGCAAGTTTGGACAGGAGACCGAACTCAATACTGCAACCTTCTATGTACATTGTGTGTGCTTGCTGCTGTCATTTCTTCAATGCTAAGATATAGATTGAATGGCCAATATCTTGGTGAAGATGTCCTTGCCCCACTCTTCGATGGAAATGTCGGCAGGTGCAGGGCAATGCTGAAGAACTGAGGATAGTTGCTGCGCTTGGTGTCATGGTTAACTTTTTTTTGTGAGAAAAAAGTTGGTTATTAAAAAGTCTAAGCATAGCTTTGTTATTTCTTCCTTTAGCATTTTAATGTGATGGTTTATGGTTAGATGAAGTCTGAACTCAGACCATGAGGTGTCTGCCTTCCTTGCTACCTGTAAGAGCACATTTCATACTTCACCTTCTAATCAAGAGAATGATTACAGAATATCTACGATTGTCTCGGCACCATGTGTAGGCTTTTGGGGTTTGGATCCATGGTGCTGCAGGGACTGTATTTAGCCAGAGAACTTCCCAGATTGCATAATTGGGGCATTATAATTGCATAATACATGCCAATTAGACAAGTCACACGTCCATAAGAATAGTCACGTTCAAATGATGAAATAATCGTACGTTCAACTTGAAATATTATATACTGCTTATATCATAACATGCATTTAATTTGAAACGCATGAATGGTTTGGCAAAGGTTTTGATGGATATTTGCATGGCAACAGCCAAAGTTTGAAAACATTTTCCTTACTCATCTTCTCTATGGTTACAAGCAGCCCTGTATGTTGTGTAGGAATGTTACACCCAGTAGTTTCCATTGAAAATTAGACCTGTATCAATTCCCACTCTATACAAACACACCTTTCCTACATTTGAACATGTCATGCTCCTTAGATGAAAACTGTTGGACAATTAAATATACATGCCAACTCAGTCTCAATCAGCAAAGTTACAGAAGCTGTTTTGGATACAAGGAGTTTCCATTTTacagacacttatccagagcgacttaccgtaagtagtgagtgcatacatttatgtactggtcccctgtgggaattgaacccacaaccccggtgttgcaagtgccatgctctaccaactgagtgcACGAAGATATGAAACAAGACCTGTGTTGCATAATAGCTGAGGTGATGTGTATACAGTGCGAAAACatgatggaaaataaaaacagGTTTCACTTTGATACtgtaaatgtacagtgccttcggaaa
>TU2175108
GacgagctagctagcttctttcgTCCATTTTGCTTTGCTGTTAGCTAGTTTATTGCAGAGATGGAAGACGGTGAAGAGCCGGGTTTAGTTCACTCTCACAGCTCTACTTCTGGGTCAAAATCGAGCAGTGACAAGATGTTTTCTCTCAAGAAATGGAATGCTGTTGCAATGTGGAGCTGGGATGTGGAGTGCGATACATGCGCCATCTGTAGGGTCCAAGTTATGGATGCATGCTTGCGGTGTCAGGCTGAAAATAAACAAGAGGACTGTGTCGTGGTATGGGGAGAGTGCAACCACTCTTTCCACAATTGCTGCATGTCTCTCTGGGTGAAGCAGAACAATCGCTGCCCACTGTGCCAGCAGGACTGGGTCGTGCAAAGAATCGGCAAATGAAATGCCTCTAACTTCCCCATCCTTCCACTGCAAGTTTGGACAGGAGACCGAACTCAATACTGCAACCTTCTATGTACATTGTGTGTGCTTGCTGCTGTCATTTCTTCAATGCTAAGATATAGATTGAATGGCCAATATCTTGGTGAAGATGTCCTTGCCCCACTCTTCGATGGAAATGTCGGCAGGTGCAGGGCAATGCTGAAGAACTGAGGATAGTTGCTGCGCTTGGTGTCATGGTTAACTTTTTTTTGTGAGAAAAAAGTTGGTTATTAAAAAGTCTAAGCATAGCTTTGTTATTTCTTCCTTTAGCATTTTAATGTGATGGTTTATGGTTAGATGAAGTCTGAACTCAGACCATGAGGTGTCTGCCTTCCTTGCTACCTGTAAGAGCACATTTCATACTTCACCTTCTAATCAAGAGAATGATTACAGAATATCTACGATTGTCTCGGCACCATGTGTAGGCTTTTGGGGTTTGGATCCATGGTGCTGCAGGGACTGTATTTAGCCAGAGAACTTCCCAGATTGCATAATTGGGGCATTATAATTGCATAATACATGCCAATTAGACAAGTCACACGTCCATAAGAATAGTCACGTTCAAATGATGAAATAATCGTACGTTCAACTTGAAATATTATATACTGCTTATATCATAACATGCATTTAATTTGAAACGCATGAATGGTTTGGCAAAGGTTTTGATGGATATTTGCATGGCAACAGCCAAAGTTTGAAAACATTTTCCTTACTCATCTTCTCTATGGTTACAAGCAGCCCTGTATGTTGTGTAGGAATGTTACACCCAGTAGTTTCCATTGAAAATTAGACCTGTATCAATTCCCACTCTATACAAACACACCTTTCCTACATTTGAACATGTCATGCTCCTTAGATGAAAACTGTTGGACAATTAAATATACATGCCAACTCAGTCTCAATCAGCAAAGTTACAGAAGCTGTTTTGGATACAAGGAGTTTCCATTTTacagacacttatccagagcgacttaccgtaagtagtgagtgcatacatttatgtactggtcccctgtgggaattgaacccacaaccccggtgttgcaagtgccatgctctaccaactgagtgcACGAAGATATGAAACAAGACCTGTGTTGCATAATAGCTGAGG
>TU2175112
GacgagctagctagcttctttcgTCCATTTTGCTTTGCTGTTAGCTAGTTTATTGCAGAGATGGAAGACGGTGAAGAGCCGGGTTTAGTTCACTCTCACAGCTCTACTTCTGGGTCAAAATCGAGCAGTGACAAGATGTTTTCTCTCAAGAAATGGAATGCTGTTGCAATGTGGAGCTGGGATGTGGAGTGCGATACATGCGCCATCTGTAGGGTCCAAGTTATGGATGCATGCTTGCGGTGTCAGGCTGAAAATAAACAAGAGGACTGTGTCGTGGTATGGGGAGAGTGCAACCACTCTTTCCACAATTGCTGCATGTCTCTCTGGGTGAAGCAGAACAATCGCTGCCCACTGTGCCAGCAGGACTGGGTCGTGCAAAGAATCGGCAAATGAAATGCCTCTAACTTCCCCATCCTTCCACTGCAAGTTTGGACAGGAGACCGAACTCAATACTGCAACCTTCTATGTACATTGTGTGTGCTTGCTGCTGTCATTTCTTCAATGCTAAGATATAGATTGAATGGCCAATATCTTGGTGAAGATGTCCTTGCCCCACTCTTCGATGGAAATGTCGGCAGGTGCAGGGCAATGCTGAAGAACTGAGGATAGTTGCTGCGCTTGGTGTCATGGTTAACTTTTTTTTGTGAGAAAAAAGTTGGTTATTAAAAAGTCTAAGCATAGCTTTGTTATTTCTTCCTTTAGCATTTTAATGTGATGGTTTATGGTTAGATGAAGTCTGAACTCAGACCATGAGGTGTCTGCCTTCCTTGCTACCTGTAAGAGCACATTTCATACTTCACCTTCTAATCAAGAGAATGATTACAGAATATCTACGATTGTCTCGGCACCATGTGTAGGCTTTTGGGGTTTGGATCCATGGTGCTGCAGGGACTGTATTTAGCCAGAGAACTTCCCAGATTGCATAATTGGGGCATTATAATTGCATAATACATGCCAATTAGACAAGTCACACGT
>TU2175110
GacgagctagctagcttctttcgTCCATTTTGCTTTGCTGTTAGCTAGTTTATTGCAGAGATGGAAGACGGTGAAGAGCCGGGTTTAGTTCACTCTCACAGCTCTACTTCTGGGTCAAAATCGAGCAGTGACAAGATGTTTTCTCTCAAGAAATGGAATGCTGTTGCAATGTGGAGCTGGGATGTGGAGTGCGATACATGCGCCATCTGTAGGGTCCAAGTTATGGATGCATGCTTGCGGTGTCAGGCTGAAAATAAACAAGAGGACTGTGTCGTGGTATGGGGAGAGTGCAACCACTCTTTCCACAATTGCTGCATGTCTCTCTGGGTGAAGCAGAACAATCGCTGCCCACTGTGCCAGCAGGACTGGGTCGTGCAAAGAATCGGCAAATGAAATGCCTCTAACTTCCCCATCCTTCCACTGCAAGTTTGGACAGGAGACCGAACTCAATACTGCAACCTTCTATGTACATTGTGTGTGCTTGCTGCTGTCATTTCTTCAATGCTAAGATATAGATTGAATGGCCAATATCTTGGTGAAGATGTCCTTGCCCCACTCTTCGATGGAAATGTCGGCAGGTGCAGGGCAATGCTGAAGAACTGAGGATAGTTGCTGCGCTTGGTGTCATGGTTAACTTTTTTTTGTGAGAAAAAAGTTGGTTATTAAAAAGTCTAAGCATAGCTTTGTTATTTCTTCCTTTAGCATTTTAATGTGATGGTTTATGGTTAGATGAAGTCTGAACTCAGACCATGAGGTGTCTGCCTTCCTTGCTACCTGTAAGAGCACATTTCATACTTCACCTTCTAATCAAGAGAATGATTACAGAATATCTACGATTGTCTCGGCACCATGTGTAGGCTTTTGGGGTTTGGATCCATGGTGCTGCAGGGACTGTATTTAGCCAGA
>TU2175109
GacgagctagctagcttctttcgTCCATTTTGCTTTGCTGTTAGCTAGTTTATTGCAGAGATGGAAGACGGTGAAGAGCCGGGTTTAGTTCACTCTCACAGCTCTACTTCTGGGTCAAAATCGAGCAGTGACAAGATGTTTTCTCTCAAGAAATGGAATGCTGTTGCAATGTGGAGCTGGGATGTGGAGTGCGATACATGCGCCATCTGTAGGGTCCAAGTTATGGATGCATGCTTGCGGTGTCAGGCTGAAAATAAACAAGAGGACTGTGTCGTGGTATGGGGAGAGTGCAACCACTCTTTCCACAATTGCTGCATGTCTCTCTGGGTGAAGCAGAACAATCGCTGCCCACTGTGCCAGCAGGACTGGGTCGTGCAAAGAATCGGCAAATGAAATGCCTCTAACTTCCCCATCCTTCCACTGCAAGTTTGGACAGGAGACCGAACTCAATACTGCAACCTTCTATGTACATTGTGTGTGCTTGCTGCTGTCATTTCTTCAATGCTAAGATATAGATTGAATGGCCAATATCTTGGTGAAGATGTCCTTGCCCCACTCTTCGATGGAAATGTCGGCAGGTGCAGGGCAATGCTGAAGAACTGAGGATAGTTGCTGCGCTTGGTGTCATGGTTAACTTTTTTTTGTGAGAAAAAAGTTGGTTATTAAAAAGTCTAAGCATAGCTTTGTTATTTCTTCCTTTAGCATTTTAATGTGATG
>TU2175111
CAGAAGAAAAGAAGACGAGTTTTACCTTCATTCACAGTAGGCTACTTTTTAATCTTTGGCTCTGCCATCTGTTCGTTTGGTAGTACTGCAGATGTGTTATAGCGCACGACCGCCCCCTGGTTTGTTTGCTCTGCTGATTAAAACATCCAAACTCCACTGacgagctagctagcttctttcgTCCATTTTGCTTTGCTGTTAGCTAGTTTATTGCAGAGATGGAAGACGGTGAAGAGCCGGGTTTAGTTCACTCTCACAGCTCTACTTCTGGGTCAAAATCGAGCAGTGACAAGATGTTTTCTCTCAAGAAATGGAATGCTGTTGCAATGTGGAGCTGGGATGTGGAGTGCGATACATGCGCCATCTGTAGGGTCCAAGTTATGGATGCATGCTTGCGGTGTCAGGCTGAAAATAAACAAGAGGACTGTGTCGTGGTATGGGGAGAGTGCAACCACTCTTTCCACAATTGCTGCATGTCTCTCTGGGTGAAGCAGAACAATCGCTGCCCACTGTGCCAGCAGGACTGGGTCGTGCAAAGAATCGGCAAATGAAATGCCTCTAACTTCCCCATCCTTCCACTGCAAGTTTGGACAGGAGACCGAACTCAATACTGCAACCTTCTATGTACATTGTGTGTGCTTGCTGCTGTCATTTCTTCAATGCTAAGATATAGATTGAATGGCCAATATCTTGGTGAAGATGTCCTTGCCCCACTCTTCGATGGAAATGTCGGCAGGTGCAGGGCAATGCTGAAGAACTGAGGATAGTTGCTGCGCTTGGTGTCATGGTTAACTTTTTTTTGTGAGAAAAAAGTTGGTTATTAAAAAGTCTAAGCAT
>TU2175107
GacgagctagctagcttctttcgTCCATTTTGCTTTGCTGTTAGCTAGTTTATTGCAGAGATGGAAGACGGTGAAGAGCCGGGTTTAGTTCACTCTCACAGCTCTACTTCTGGGTCAAAATCGAGCAGTGACAAGATGTTTTCTCTCAAGAAATGGAATGCTGTTGCAATGTGGAGCTGGGATGTGGAGTGCGATACATGCGCCATCTGTAGGGTCCAAGTTATGGATGCATGCTTGCGGTGTCAGGCTGAAAATAAACAAGAGGACTGTGTCGTGGTATGGGGAGAGTGCAACCACTCTTTCCACAATTGCTGCATGTCTCTCTGGGTGAAGCAGAACAATCGCTGCCCACTGTGCCAGCAGGACTGGGTCGTGCAAAGAATCGGCAAATGAAATGCCTCTAACTTCCCCATCCTTCCACTGCAAGTTTGGACAGGAGACCGAACTCAATACTGCAACCTTCTATGTACATTGTGTGTGCTTGCTGCTGTCATTTCTTCAATGCTAAGATATAGATTGAATGGCCAATATCTTGGTGAAGATGTCCTTGCCCCACTCTTCGATGGAAATGTCGGCAGGTGCAGGGCAATGCTGAAGAACTGAGGATAGTTGCTGCGCTTGGTGTC

Function

symbol description
rnf7 Predicted to enable cullin family protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of Cul5-RING ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human RNF7 (ring finger protein 7).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582219.2 False 1577 mRNA 0.42 3 10915471 10917882
TU2175108 False 1546 TUCP 0.42 3 10915554 10917934
TU2175112 False 975 TUCP 0.45 3 10916125 10917934
TU2175110 False 906 TUCP 0.45 3 10916194 10917934
TU2175109 False 717 TUCP 0.45 3 10916383 10917934
TU2175111 False 837 TUCP 0.46 3 10916421 10918092
TU2175107 True 626 TUCP 0.48 3 10916474 10917934

Neighbor

gene id symbol gene type direction distance location
LOC110503733 LOC106612581 coding downstream 2599 10905329 ~ 10912872 (-)
LOC110503731 LOC106612580 coding downstream 38272 10873780 ~ 10877199 (-)
LOC110503728 LOC106612577 coding downstream 106067 10765892 ~ 10809404 (-)
LOC110503726 LOC106612578 coding downstream 185060 10726288 ~ 10730411 (-)
LOC110503727 LOC106612579 coding downstream 195360 10711334 ~ 10720111 (-)
shbgb shbgb coding upstream 54209 10972091 ~ 10982118 (-)
LOC110503738 rasa2 coding upstream 68528 10983924 ~ 11027881 (-)
LOC110503737 LOC106612576 coding upstream 116137 11034019 ~ 11045548 (-)
fbxo36a LOC106612583 coding upstream 128741 11046623 ~ 11047857 (-)
daw1 daw1 coding upstream 495965 11413847 ~ 11428873 (-)
G1901764 NA non-coding downstream 23139 10891993 ~ 10892332 (-)
G1901763 NA non-coding downstream 23569 10891648 ~ 10891902 (-)
G1901752 NA non-coding downstream 43949 10870977 ~ 10871522 (-)
G1901532 LOC106612575 non-coding downstream 61939 10852598 ~ 10853532 (-)
G1901811 NA non-coding upstream 53261 10971143 ~ 10971351 (-)
G1901827 NA non-coding upstream 101138 11019020 ~ 11019391 (-)
G1901836 NA non-coding upstream 111644 11029526 ~ 11029754 (-)
G1901838 NA non-coding upstream 113563 11031445 ~ 11032378 (-)
G1901516 NA other downstream 59034 10853831 ~ 10856437 (-)
G1901405 NA other downstream 297990 10616924 ~ 10617481 (-)
G1901302 LOC106612600 other downstream 515614 10399042 ~ 10399857 (-)
G1901206 NA other downstream 709523 10205220 ~ 10205948 (-)
G1901072 LOC107388308 other downstream 903117 10005372 ~ 10012354 (-)
G1901922 LOC100380637 other upstream 272793 11190675 ~ 11192759 (-)
LOC110503748 LOC106612568 other upstream 535522 11453367 ~ 11478299 (-)
G1902875 NA other upstream 1049960 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other upstream 1061929 11941794 ~ 11982431 (-)
LOC110503775 pou2af1 other upstream 1799568 12716285 ~ 12724009 (-)

Expression


Co-expression Network