Item | Value |
---|---|
gene id | trip12 |
gene name | NA |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048588.1 |
NCBI id | CM023242.2 |
chromosome length | 45930806 |
location | 11048636 ~ 11106085 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
E3 ubiquitin-protein ligase TRIP12 isoform X5 |
id | description |
---|---|
K10590 | TRIP12; E3 ubiquitin-protein ligase TRIP12 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021582226.2 | False | 7598 | mRNA | 0.56 | 42 | 11048636 | 11106085 |
XM_021582227.2 | False | 7595 | mRNA | 0.56 | 42 | 11048636 | 11106085 |
XM_021582228.2 | False | 7592 | mRNA | 0.56 | 42 | 11048636 | 11106085 |
XM_021582229.2 | False | 7589 | mRNA | 0.56 | 42 | 11048636 | 11106085 |
XM_021582230.2 | False | 7586 | mRNA | 0.56 | 42 | 11048636 | 11106085 |
XM_021582231.2 | False | 7586 | mRNA | 0.56 | 42 | 11048636 | 11106085 |
XM_021582232.2 | False | 7583 | mRNA | 0.56 | 42 | 11048636 | 11106085 |
XM_021582233.2 | False | 7580 | mRNA | 0.56 | 42 | 11048636 | 11106085 |
XM_021582234.2 | False | 7472 | mRNA | 0.56 | 41 | 11048636 | 11106085 |
XM_021582236.2 | False | 7469 | mRNA | 0.56 | 41 | 11048636 | 11106085 |
XM_021582237.2 | False | 7460 | mRNA | 0.56 | 41 | 11048636 | 11106085 |
XM_021582238.2 | False | 7457 | mRNA | 0.56 | 41 | 11048636 | 11106085 |
XM_021582239.2 | False | 7454 | mRNA | 0.56 | 41 | 11048636 | 11106085 |
XM_021582240.2 | True | 6469 | mRNA | 0.55 | 39 | 11059222 | 11106085 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118944017 | NA | coding | upstream | 3977 | 11040237 ~ 11044659 (+) |
LOC110503739 | NA | coding | upstream | 19373 | 11026931 ~ 11029263 (+) |
LOC110503736 | fa70b | coding | upstream | 77622 | 10931879 ~ 10971014 (+) |
LOC110503318 | LOC106612575 | coding | upstream | 192145 | 10827276 ~ 10856491 (+) |
LOC110503730 | bcl7b | coding | upstream | 232361 | 10813213 ~ 10816275 (+) |
LOC110503319 | LOC100380637 | coding | downstream | 6332 | 11112417 ~ 11192759 (+) |
LOC110503743 | pid1 | coding | downstream | 89600 | 11195685 ~ 11232556 (+) |
LOC110503320 | LOC106612570 | coding | downstream | 267348 | 11373433 ~ 11413851 (+) |
LOC110503321 | LOC106580908 | coding | downstream | 323091 | 11429176 ~ 11431291 (+) |
LOC110503746 | LOC106612519 | coding | downstream | 327370 | 11433455 ~ 11436687 (+) |
G1901635 | NA | non-coding | upstream | 9130 | 11039186 ~ 11039506 (+) |
G1901606 | NA | non-coding | upstream | 58245 | 10989946 ~ 10990391 (+) |
G1901605 | NA | non-coding | upstream | 60186 | 10983933 ~ 10988450 (+) |
G1901604 | NA | non-coding | upstream | 65968 | 10982328 ~ 10982668 (+) |
G1901654 | NA | non-coding | downstream | 3174 | 11109259 ~ 11109511 (+) |
G1901655 | NA | non-coding | downstream | 3815 | 11109900 ~ 11110272 (+) |
G1901971 | NA | non-coding | downstream | 166114 | 11272199 ~ 11272443 (+) |
G1901972 | NA | non-coding | downstream | 166651 | 11272736 ~ 11273055 (+) |
G1902058 | NA | non-coding | downstream | 314503 | 11420588 ~ 11422240 (+) |
G1901545 | NA | other | upstream | 175730 | 10871658 ~ 10872906 (+) |
LOC118944016 | LOC106931471 | other | upstream | 290952 | 10730732 ~ 10758090 (+) |
G1898930 | NA | other | upstream | 464187 | 10584115 ~ 10584449 (+) |
LOC110503716 | LOC106580865 | other | upstream | 498824 | 10543581 ~ 10560319 (+) |
LOC110503322 | LOC106612564 | other | downstream | 470866 | 11494038 ~ 11583941 (+) |
G1902710 | NA | other | downstream | 1206490 | 12312575 ~ 12313457 (+) |
G1903192 | NA | other | downstream | 1432636 | 12538721 ~ 12544378 (+) |
G1903195 | LOC106591448 | other | downstream | 1436275 | 12542360 ~ 12547857 (+) |
LOC110503782 | LOC106612540 | other | downstream | 1766138 | 12858737 ~ 12881204 (+) |