LOC110503324 (LOC106612555)


Basic Information

Item Value
gene id LOC110503324
gene name LOC106612555
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 11941794 ~ 11982431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503324
atgttccaaagATTTCTtgtttacatGGTAGCCATTCTTGCAGTGATCCAGGCAGGCTCAGAGGCCAAGCTTTGTGCCAGTCTTCTGCAGCCCAACGAGACCCTGGCCATGACCATATCTCTGATTGTTGATGAGCAGAGCAAAATTCTTCTCCAAGAGAGTTCTGACCAAGAGTTTCACCGCTGCTTCCAGTTTCAGGCCCCTCAGGTGGAGAGTGACCAAGTGCAAAACTTTAAGGTGGAGATTCGAGGTGAAACGTTTCTAtcgacagaggagagaaaggtcatgATCAAACCCTACAGTCCGATGACATTCATCCAAACGGATAAACCAATCTACAACCCAGGAGAAACAGGTAATTTTACACAGAGCCAGTACACAGTCTGCTGGACTGTTTCCCTTACCGAAGACCTTATGAGTCAGTTTGGCACGGCCCAACAGCGAGATCCGGAGGTGCAAAGGCTTGTGGACAAAGTGGCAGCTATTGATGGGAAGAGGCTACAGGATGAGGGGGGTCTCCTGCACTGGACTCAGACCTCCTCAGAGACCTCAGCCTCCCTGGCAGTGGAGATCAGCTCCTACGTTCTGCTGGCTTCCCTCAGTGCCTCCCCTCTGTCATTGCCACTGACCTGGGCTAGTCACTCTACCCTCCAGGCCCTGGCTCTCTACTCCACCAGGGTGTTCAGTAGAGAGGGCACCagcacagtgacaATGGCGCTCCACTACAACATCCCTACTCCTGCTGACAGCACAACGCTCAGCATCCAGGTGAAGACAGAGGTGGACTGCAACAGCAACTCTTTGAGACCCAGAGTAACGCTGAACCTCGAGTCTCAATATCATGGAAAGGAGCTGACCACCAATATGATTATAGTGGATTTGAAAATGCTGTCTGGGTTTGCAGACACAGAGACTTTGGGGAGTCCTCTGCATTACAGGGAGTCTGGATCAGCAGATGTGCCCCTTAAGGTTCCAGACACCATCACCTCCTGGGAGTCAGAGGCATTCTGCCTGGCCCCTGGTGGTTTCGATCTGGTTGCTCCGGTAAAACTTACAGTTTTACAGCAATTCTTCCCGGAACTCCCCTTGCCTTACGCCATCATCCAGTGGAGAGCATTTTGagctgaaggccactgtgttcaacTACCTGTCCAAGTGCATCATGGTTTCTGTGACTCCGGCTCCTTCCTTAGACTACACTCTCACACCCCTGAATGATGTCCAGTATTCATCATGCTTGTGTGCCAATGGACAAAAGACCTTTAGTTGGACAATGGCTCCCTCTGTCCTGGGTAAGTCACCAGTCTCCATTCAACTTAGTGCAGAGGCTGTCCGGTCCCACGCTGTGTGTGACAATGAGATTGTGAAGGTACCAGAGAGAGGACGCATCGACACAGTTACAAAGAGCCTGCTGGTGAAGgcaGAGGGAACAGAAAAGACCAAAACCTACAACTGGTTGCTGTGTCCAACTGGAGAAACTCTGACAGAGGAGGTGGAACTGCAACTCCCCAAGAATGTGGTGGATGGATCTGATCGAATTTCTCTCTCAGTCCTGGGGGACATCCTGGGTCGGGCCCTCAAGAACCTGGATGGACTGCTGCAGATGCCGTATGGGTGTGGAGAGCAGAATATGGCCCTCCTCGCCCCCAATATCTACATACTCGAGTACCTGAGGAACACAGAGCAGCTCACTCCAGCCATCCGAGACAAGGCCATCCAGTTCCTCACTAGTGGTTACCAAAGGCAGCTGAACTACAAGCATTTTGATGGTGCATACAGCACATTTGGACAAGGCTCGGGGAATACTTGGCTGACTGCTTTTGTCTTGAGATCCTTTGGCAAAGCACAGTCTTTCATTTATATTGACCCGGCGCAAATGACAGATTCCACGAGTTGGTTGGAAAGTCAGCAAGGCAAACATGGGTGTTTTGTCAGATTGGGGAAACTCTTTAATAACAGAATTAAGGGTGGGGTGACGGATGAAGTCACACTGACGGCCTACATCACTGCTTCAATGCTGGAGCTCAACATGTCAGTGTCGGATCCTGTTTTGTACGGCAGTTTGTCTTGCCTGAAGAACTCCACCAGTGATTTGTCCAACACCTACACTACTGCTCTGCTGGCCTACACCTTTACCCTGGCAGGGGACATGGAGACCCGGGCCCAGCTTCTGCAGCACCTGAACACGGTCGCATTACTAGAGGGGGGTGTCCTGCACTGGACTCAGACCTCCTCAGAGACCTCAGCCTCCCTGGCAGTGGAGATCAGCTCCTACTGGCTTCCCTCAGTGCCCTCAGTGCCTCCCCTCTGTCTACCACTGACCTGGGCTATGCTTCCCGCATCGTCAGGTGGCTGGTGAGGCAGCAGAACGCCTACGGAGGCTTCTTCTCCACACAGGACACAGTGGTGGCCCTCCAGGCCCTGGCTCTCTACTCCACCAGGGTGTTCAGTAGAGAGGGCACCagcacagtgacagtacagtCTCCCAGCGGGGGACAGCACCTCTTTGAAGTTAACAAAAACAACAAGCTTCCAGGAGAGTGCGCTGCAGGACACAGAAGGTAAGTACACGGTGGAAGTGAAGGGCAGTGCTTGTGCCTCAGTGCAGATGGCGCTCCACTACAACATCCCTACTCCTACTGACAGCACAACGCTCAGCATCCAGGTGAAGACAGAGGTGGACTGCAACAGCAACTCGTTGAGACCCAGAGTAACGCTGAACCTTGAGTCTCAATATGTTGGAAAGGAGCTGACCACCAATATGATTATAGTGGATTTGAAAATGCTGTCTGGGTTTGCTCCAGACACAGAGTCTTTGGGGAGACTGTCGGGTTCAGTTCTAGTGGATCGTGTCGATACTAAAGATGATCATGTGTTAATATACTTGAGAGAGTTACCACTGTTCCCACCACTGTTTTTCCACCACACCCTAGACATCATACAGGAGCTCCCAGTACAAAATCTAAAGCCAGCGGTGGTCAAGATCTACGACTACTACCAGCCGAGTGACCAGGCAGAAACAGAATATGTCTTCCCTTGCAAGTAGGGGTTACAAACTGATGTAAGAAGAACATGACATTCACAGAAGTCACACCTGCAAACCTTGACATATCTTTCAAGATTAAAAGTAAAATATGTAACTGGAATTAAAGTTTTCCATTATA
>TU2176352
GTGGATCGTGTCGATACTAAAGATGATCATGTGTTAATATACTTGAGAGAGTTACCACTGTTCCCACCACTGTTTTTCCACCACACCCTAGACATCATACAGGAGCTCCCAGTACAAAATCTAAAGCCAGCGGTGGTCAAGATCTACGACTACTACCAGCCGAGTGACCAGGCAGAAACAGAATATGTCTTCCCTTGCAAGTAGGGGTTACAAACTGATGTAAGAAGAACATGACATTCACAGAAGTCACACCTGCAAACCTTGACATATCTTTCAAGATTAAAAGTAAAATATGTAACTGGAATTAAAGTTTTCCATTATAA
>TU2176356
GGCAGGCTCAGAGGCCAAGCTTTGTGCCAGTCTTCTGCAGCCCAACGAGACCCTGGCCATGACCATATCTCTGATTGTTGATGAGCAGAGCAAAATTCTTCTCCAAGAGAGTTCTGACCAAGAGTTTCACCGCTGCTTCCAGTTTCAGGCCCCTCAGGTGGAGAGTGACCAAGTGCAAAACTTTAAGGTGGAGATTCGAGGTGAAACGTTTCTAtcgacagaggagagaaaggtcatgATCAAACCCTACAGTCCGATGACATTCATCCAAACGGATAAACCAATCTACAACCCAGGAGAAACAGGTAATTTTACACAGAGCCAG

Function

NR:

description
ovostatin homolog 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503324 False 3164 mRNA 0.48 26 11941795 11982431
TU2176352 False 323 lncRNA 0.40 4 11941794 11942562
TU2176356 True 325 TUCP 0.48 2 11979811 11980462

Neighbor

gene id symbol gene type direction distance location
LOC110503323 LOC106612518 coding downstream 120284 11820603 ~ 11821511 (-)
LOC110503751 LOC106612562 coding downstream 127253 11595194 ~ 11814542 (-)
LOC110503750 LOC106612566 coding downstream 452969 11483426 ~ 11488826 (-)
LOC110503749 LOC106612565 coding downstream 458858 11480177 ~ 11482937 (-)
LOC110503748 LOC106612568 coding downstream 463496 11453367 ~ 11478299 (-)
LOC118944095 LOC106612537 coding upstream 40239 12022670 ~ 12024891 (-)
LOC118936592 LOC106612536 coding upstream 44171 12026602 ~ 12059103 (-)
LOC110503325 sorl1 coding upstream 316010 12298441 ~ 12371391 (-)
LOC110503763 LOC106612548 coding upstream 396473 12378904 ~ 12386064 (-)
LOC110503765 LOC106612556 coding upstream 423552 12405983 ~ 12419981 (-)
G1902865 NA non-coding downstream 27265 11865546 ~ 11914530 (-)
G1902880 NA non-coding downstream 63295 11873811 ~ 11878500 (-)
G1902870 NA non-coding downstream 70093 11868190 ~ 11871702 (-)
G1902514 NA non-coding downstream 139178 11768555 ~ 11802617 (-)
G1902454 NA non-coding downstream 272695 11668885 ~ 11669100 (-)
G1902936 NA non-coding upstream 103061 12085492 ~ 12085794 (-)
G1902939 LOC106612544 non-coding upstream 112606 12095037 ~ 12098085 (-)
G1903027 NA non-coding upstream 233711 12216142 ~ 12216349 (-)
G1903032 NA non-coding upstream 240261 12222692 ~ 12222966 (-)
G1903033 NA non-coding upstream 240595 12223026 ~ 12223292 (-)
G1901922 LOC100380637 other downstream 749036 11190675 ~ 11192759 (-)
LOC110503734 rnf7 other downstream 1023703 10915471 ~ 10918092 (-)
G1901516 NA other downstream 1085358 10853831 ~ 10856437 (-)
G1901405 NA other downstream 1324314 10616924 ~ 10617481 (-)
LOC110503775 pou2af1 other upstream 735019 12716285 ~ 12724009 (-)
rabx5 rabx5 other upstream 1734219 13716650 ~ 13719451 (-)
G1904408 NA other upstream 1775397 13757828 ~ 13758644 (-)
G1904846 spg20 other upstream 2060539 14042970 ~ 14043449 (-)
G1904877 NA other upstream 2107291 14089722 ~ 14142728 (-)
G1902875 NA other upstream 25280 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other upstream 37249 11941794 ~ 11982431 (-)

Expression


Co-expression Network