LOC118944095 (LOC106612537)


Basic Information

Item Value
gene id LOC118944095
gene name LOC106612537
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 12022670 ~ 12024891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039402.1
gtaaggattcagccaggtgtagcggtggtaaggattcagccaggtgtagcggtggtaaggattcagccaggtgtagcggtggtaaggattcagcCAGGTGTATTGGTGTTAAGGACTCACTCCATTGTGCtggaaagaaagctctgctgtttggacagctttatgtaggccctaacagtttgtaggCACCgcttgtcactgttatagtgcaattaatgtgttATTTAGTGTAGTGTCTTTGGTGGCAATTGtttttgtttgccccaccaagatttacatgctaaaatcaccactggtcCTGGCTATAATCTCCATTATGAATATCTCCTAATAATTTATTGAGCTAATGTAGATGTAGTCAAACACAAATCCATTTAGAGAAAGAGTAACAGAACCATCAAGATAACACAAACAGATACACCGACAAGACAGATACTATAGAGCCCTGTCGttgacaacacacacaaaaaacatgaaAACATTCATAATGAGATGATGAACAGATGAGTATACTGTGAAAAATAATCCTCATGACCTAACAATGAGAAAGAAAATACATACGTATTGCATTGCTGAAGCTAGAACCAAGTGAACATCGAAGACAGCCCTGAAATACAGTCAACAGTGACAACGGTAAGATAAGACATTTCCCTCTTGAAATATTGCATGGAAATAAACCTGTAAACCTATATTGCCTTGCATTATGTCTAGGAAGCTCAACTTACCACATGGCGATCGACTCAACTTAACCCAAGACatattttgactatattagcccacacagccacaatgatgcactttcatgctaggtttaggacatCAAATTGAAGTTTATAGAGatcccaactgatgtatagaacaatatTGCaattatctactttggtttagatacgaACATAGTGAAACCGCTAACACAATGAATTTGACctggtgaaaatctgttttttggaaccaactttttccatgtggtttcttccttcacagactccatgaaatgatgtcCTCTTCCTAAAGATTTGGTCAAAtgattcattttgtgtatggtttcctagaaacaagggaggctcaatttacccctttggctcaacttggCCCACTTTTCCCTCGGCCAGATTTCTCTTAGGAAAGAGGTCCTCAATGGAGCAagcttaaatacattttaaaaatctaaaGAAACATTGTTCAAAGAATTTGTAAGTCATACTCCATTGTTCTCTATGGGACACTTAGTGGCTTTCTGTTTGAACTCTGACCTCTGCATTACAGGGAGTCTGGATCAGCAGATGTGCCCCTTAAGGTTCCAGACACCATCACCTCCTGGGAGTCAGAGGCATTCTGCCTGGCCCCTGGTGGTTTCGGTCTGGCTGCTCCGGTAAAACGTACAGTTTTACAGCAATTCTTCCCGGAACTCCCCTTGCCTTACGCCATCATCCGTGGAGAGCATTTTGagctgaaggccactgtgttcaacTACTGGTCCAAGTGCATCATGGTTTCTGTGACTGCGGCTCCTTCCTTAGACTACACTCTCACACCCCTGAATGATGTCCAGTATTCATCATGCTTGTGTGCCAATGGACGAAAGACCTTCAGTTGGACAATGGCACCCTCTGTCCTGGGGGATTTTAACATCCAGAGCCTGTCCAGTCCCACGCTGTGTGTGACAATGAGATTGTGAAAGTAAAGGAGAGAGGACGCATCTACAAAGTCACACAGAGCCTGCTGGTGAAGgCGGAGGGAAGAGAGAATAACTGGTTGCTGTGTCCAAC
>XR_005039401.1
gattcagccaggtgtagcggtggtaaggattcagccaggtgtagcggtggtaaggattcagccaggtgtagcggtggtaaggattcagcCAGGTGTATTGGTGTTAAGGACTCACTCCATTGTGCtggaaagaaagctctgctgtttggacagctttatgtaggccctaacagtttgtaggCACCgcttgtcactgttatagtgcaattaatgtgttATTTAGTGTAGTGTCTTTGGTGGCAATTGtttttgtttgccccaccaagatttacatgctaaaatcaccactggtcCTGGCTATAATCTCCATTATGAATATCTCCTAATAATTTATTGAGCTAATGTAGATGTAGTCAAACACAAATCCATTTAGAGAAAGAGTAACAGAACCATCAAGATAACACAAACAGATACACCGACAAGACAGATACTATAGAGCCCTGTCGttgacaacacacacaaaaaacatgaaAACATTCATAATGAGATGATGAACAGATGAGTATACTGTGAAAAATAATCCTCATGACCTAACAATGAGAAAGAAAATACATACGTATTGCATTGCTGAAGCTAGAACCAAGTGAACATCGAAGACAGCCCTGAAATACAGTCAACAGTGACAACGGTAAGATAAGACATTTCCCTCTTGAAATATTGCATGGAAATAAACCTGTAAACCTATATTGCCTTGCATTATGTCTAGGAAGCTCAACTTACCACATGGCGATCGACTCAACTTAACCCAAGACatattttgactatattagcccacacagccacaatgatgcactttcatgctaggtttaggacatCAAATTGAAGTTTATAGAGatcccaactgatgtatagaacaatatTGCaattatctactttggtttagatacgaACATAGTGAAACCGCTAACACAATGAATTTGACctggtgaaaatctgttttttggaaccaactttttccatgtggtttcttccttcacagactccatgaaatgatgtcCTCTTCCTAAAGATTTGGTCAAAtgattcattttgtgtatggtttcctagaaacaagggaggctcaatttacccctttggctcaacttggCCCACTTTTCCCTCGGCCAGATTTCTCTTAGGAAAGAGGTCCTCAATGGAGCAagcttaaatacattttaaaaatctaaaGAAACATTGTTCAAAGAATTTGTAAGTCATACTCCATTGTTCTCTATGGGACACTTAGTGGCTTTCTGTTTGAACTCTGACCTCTGCATTACAGGGAGTCTGGATCAGCAGATGTGCCCCTTAAGGTTCCAGACACCATCACCTCCTGGGAGTCAGAGGCATTCTGCCTGGCCCCTGGTGGTTTCGGTCTGGCTGCTCCGGTAAAACGTACAGTTTTACAGCAATTCTTCCCGGAACTCCCCTTGCCTTACGCCATCATCCGTGGAGAGCATTTTGagctgaaggccactgtgttcaacTACTGGTCCAAGTGCATCATGGTTTCTGTGACTGCGGCTCCTTCCTTAGACTACACTCTCACACCCCTGAATGATGTCCAGTATTCATCATGCTTGTGTGCCAATGGACGAAAGACCTTCAGTTGGACAATGGCACCCTCTGTCCTGGGGGATTTTAACATCCAGAGCCTGTCCAGTCCCACGCTGTGTGTGACAATGAGATTGTGAAAGTAAAGGAGAGAGGACGCATCTACAAAGTCACACAGAGCCTGCTGGTGAAGGTATGTAGCCTATTGTTGTGGTGGAACTTAGTGTTAGGTTGTACATATACCATTTTGTGTAACTGCCTCTGACTGAAAagtatctccctctctattcatCTCCTCCAATTCTctactttctctcctctctctgtgctctatcactctctctcag

Function

NR:

description
PREDICTED: alpha-2-macroglobulin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039402.1 False 1769 mRNA 0.43 4 12022670 12024891
XR_005039401.1 True 1880 mRNA 0.42 3 12022708 12024886

Neighbor

gene id symbol gene type direction distance location
LOC110503324 LOC106612555 coding downstream 40239 11941794 ~ 11982431 (-)
LOC110503323 LOC106612518 coding downstream 201159 11820603 ~ 11821511 (-)
LOC110503751 LOC106612562 coding downstream 208128 11595194 ~ 11814542 (-)
LOC110503750 LOC106612566 coding downstream 533844 11483426 ~ 11488826 (-)
LOC110503749 LOC106612565 coding downstream 539733 11480177 ~ 11482937 (-)
LOC118936592 LOC106612536 coding upstream 1711 12026602 ~ 12059103 (-)
LOC110503325 sorl1 coding upstream 273550 12298441 ~ 12371391 (-)
LOC110503763 LOC106612548 coding upstream 354013 12378904 ~ 12386064 (-)
LOC110503765 LOC106612556 coding upstream 381092 12405983 ~ 12419981 (-)
il4i1 LOC106612549 coding upstream 398385 12423276 ~ 12427988 (-)
G1902865 NA non-coding downstream 108140 11865546 ~ 11914530 (-)
G1902880 NA non-coding downstream 144170 11873811 ~ 11878500 (-)
G1902870 NA non-coding downstream 150968 11868190 ~ 11871702 (-)
G1902514 NA non-coding downstream 220053 11768555 ~ 11802617 (-)
G1902936 NA non-coding upstream 60601 12085492 ~ 12085794 (-)
G1902939 LOC106612544 non-coding upstream 70146 12095037 ~ 12098085 (-)
G1903027 NA non-coding upstream 191251 12216142 ~ 12216349 (-)
G1903032 NA non-coding upstream 197801 12222692 ~ 12222966 (-)
G1903033 NA non-coding upstream 198135 12223026 ~ 12223292 (-)
LOC110503748 LOC106612568 other downstream 561623 11453367 ~ 11478299 (-)
G1901922 LOC100380637 other downstream 829911 11190675 ~ 11192759 (-)
LOC110503734 rnf7 other downstream 1104578 10915471 ~ 10918092 (-)
G1901516 NA other downstream 1166233 10853831 ~ 10856437 (-)
LOC110503775 pou2af1 other upstream 692559 12716285 ~ 12724009 (-)
rabx5 rabx5 other upstream 1691759 13716650 ~ 13719451 (-)
G1904408 NA other upstream 1732937 13757828 ~ 13758644 (-)
G1904846 spg20 other upstream 2018079 14042970 ~ 14043449 (-)
G1904877 NA other upstream 2064831 14089722 ~ 14142728 (-)

Expression


Co-expression Network